data_3NP2 # _model_server_result.job_id rB5wWu-tmjEzsf6EQ0Nd2w _model_server_result.datetime_utc '2024-11-01 04:24:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3np2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":188}' # _entry.id 3NP2 # _exptl.entry_id 3NP2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3NP2 _cell.length_a 182.296 _cell.length_b 182.296 _cell.length_c 182.296 _cell.Z_PDB 96 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NP2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 209 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 4 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 24-meric _pdbx_struct_assembly.oligomeric_count 24 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 5 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 6 'crystal symmetry operation' 6_555 z,-x,-y 0 0 1 -1 0 0 0 -1 0 0 0 0 7 'crystal symmetry operation' 7_555 -z,-x,y 0 0 -1 -1 0 0 0 1 0 0 0 0 8 'crystal symmetry operation' 8_555 -z,x,-y 0 0 -1 1 0 0 0 -1 0 0 0 0 9 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 10 'crystal symmetry operation' 10_555 -y,z,-x 0 -1 0 0 0 1 -1 0 0 0 0 0 11 'crystal symmetry operation' 11_555 y,-z,-x 0 1 0 0 0 -1 -1 0 0 0 0 0 12 'crystal symmetry operation' 12_555 -y,-z,x 0 -1 0 0 0 -1 1 0 0 0 0 0 13 'crystal symmetry operation' 13_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 14 'crystal symmetry operation' 14_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 15 'crystal symmetry operation' 15_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 16 'crystal symmetry operation' 16_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 17 'crystal symmetry operation' 17_555 x,z,-y 1 0 0 0 0 1 0 -1 0 0 0 0 18 'crystal symmetry operation' 18_555 -x,z,y -1 0 0 0 0 1 0 1 0 0 0 0 19 'crystal symmetry operation' 19_555 -x,-z,-y -1 0 0 0 0 -1 0 -1 0 0 0 0 20 'crystal symmetry operation' 20_555 x,-z,y 1 0 0 0 0 -1 0 1 0 0 0 0 21 'crystal symmetry operation' 21_555 z,y,-x 0 0 1 0 1 0 -1 0 0 0 0 0 22 'crystal symmetry operation' 22_555 z,-y,x 0 0 1 0 -1 0 1 0 0 0 0 0 23 'crystal symmetry operation' 23_555 -z,y,x 0 0 -1 0 1 0 1 0 0 0 0 0 24 'crystal symmetry operation' 24_555 -z,-y,-x 0 0 -1 0 -1 0 -1 0 0 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 I N N ? 6 J N N ? 6 K N N ? 6 L N N ? 6 M N N ? 6 N N N ? 6 O N N ? 6 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 45 X CYS 45 1_555 E PD PD . X PD 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc2 A SG CYS 45 X CYS 45 1_555 F PD PD . X PD 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc3 A NE2 HIS 49 X HIS 49 1_555 E PD PD . X PD 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.919 ? metalc ? metalc4 A OE2 GLU 60 X GLU 60 1_555 H CD CD . X CD 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? metalc ? metalc5 A OE1 GLU 60 X GLU 60 1_555 H CD CD . X CD 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? metalc ? metalc6 A OD2 ASP 80 X ASP 80 1_555 G CD CD . X CD 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.863 ? metalc ? metalc7 A NE2 HIS 114 X HIS 114 1_555 C PD PLL . X PLL 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc8 A SG CYS 126 X CYS 126 1_555 C PD PLL . X PLL 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc9 A SG CYS 126 X CYS 126 1_555 D PD PLL . X PLL 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? metalc ? metalc10 D PD PLL . X PLL 177 1_555 Q O HOH . X HOH 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 3NP2 _atom_sites.fract_transf_matrix[1][1] 0.005486 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005486 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005486 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 X 1 175 1 SO4 SO4 . C 3 PLL X 1 176 1 PLL PLL . D 3 PLL X 1 177 2 PLL PLL . E 4 PD X 1 178 1 PD PD . F 4 PD X 1 179 2 PD PD . G 5 CD X 1 180 1 CD CD . H 5 CD X 1 181 2 CD CD . I 6 EDO X 1 182 1 EDO EDO . J 6 EDO X 1 183 2 EDO EDO . K 6 EDO X 1 184 3 EDO EDO . L 6 EDO X 1 185 4 EDO EDO . M 6 EDO X 1 186 5 EDO EDO . N 6 EDO X 1 187 6 EDO EDO . O 6 EDO X 1 188 7 EDO EDO . P 6 EDO X 1 189 8 EDO EDO . Q 7 HOH X 1 190 1 HOH HOH . Q 7 HOH X 2 191 2 HOH HOH . Q 7 HOH X 3 192 3 HOH HOH . Q 7 HOH X 4 193 4 HOH HOH . Q 7 HOH X 5 194 5 HOH HOH . Q 7 HOH X 6 195 6 HOH HOH . Q 7 HOH X 7 196 7 HOH HOH . Q 7 HOH X 8 197 8 HOH HOH . Q 7 HOH X 9 198 9 HOH HOH . Q 7 HOH X 10 199 10 HOH HOH . Q 7 HOH X 11 200 11 HOH HOH . Q 7 HOH X 12 201 12 HOH HOH . Q 7 HOH X 13 202 13 HOH HOH . Q 7 HOH X 14 203 14 HOH HOH . Q 7 HOH X 15 204 15 HOH HOH . Q 7 HOH X 16 205 16 HOH HOH . Q 7 HOH X 17 206 17 HOH HOH . Q 7 HOH X 18 207 18 HOH HOH . Q 7 HOH X 19 208 19 HOH HOH . Q 7 HOH X 20 209 20 HOH HOH . Q 7 HOH X 21 210 21 HOH HOH . Q 7 HOH X 22 211 22 HOH HOH . Q 7 HOH X 23 212 23 HOH HOH . Q 7 HOH X 24 213 24 HOH HOH . Q 7 HOH X 25 214 25 HOH HOH . Q 7 HOH X 26 215 26 HOH HOH . Q 7 HOH X 27 216 27 HOH HOH . Q 7 HOH X 28 217 28 HOH HOH . Q 7 HOH X 29 218 29 HOH HOH . Q 7 HOH X 30 219 30 HOH HOH . Q 7 HOH X 31 220 31 HOH HOH . Q 7 HOH X 32 221 32 HOH HOH . Q 7 HOH X 33 222 33 HOH HOH . Q 7 HOH X 34 223 34 HOH HOH . Q 7 HOH X 35 224 35 HOH HOH . Q 7 HOH X 36 225 36 HOH HOH . Q 7 HOH X 37 226 37 HOH HOH . Q 7 HOH X 38 227 38 HOH HOH . Q 7 HOH X 39 228 39 HOH HOH . Q 7 HOH X 40 229 40 HOH HOH . Q 7 HOH X 41 230 41 HOH HOH . Q 7 HOH X 42 231 42 HOH HOH . Q 7 HOH X 43 232 43 HOH HOH . Q 7 HOH X 44 233 44 HOH HOH . Q 7 HOH X 45 234 45 HOH HOH . Q 7 HOH X 46 235 46 HOH HOH . Q 7 HOH X 47 236 47 HOH HOH . Q 7 HOH X 48 237 48 HOH HOH . Q 7 HOH X 49 238 49 HOH HOH . Q 7 HOH X 50 239 50 HOH HOH . Q 7 HOH X 51 240 51 HOH HOH . Q 7 HOH X 52 241 52 HOH HOH . Q 7 HOH X 53 242 53 HOH HOH . Q 7 HOH X 54 243 54 HOH HOH . Q 7 HOH X 55 244 55 HOH HOH . Q 7 HOH X 56 245 56 HOH HOH . Q 7 HOH X 57 246 57 HOH HOH . Q 7 HOH X 58 247 58 HOH HOH . Q 7 HOH X 59 248 59 HOH HOH . Q 7 HOH X 60 249 60 HOH HOH . Q 7 HOH X 61 250 61 HOH HOH . Q 7 HOH X 62 251 62 HOH HOH . Q 7 HOH X 63 252 63 HOH HOH . Q 7 HOH X 64 253 64 HOH HOH . Q 7 HOH X 65 254 65 HOH HOH . Q 7 HOH X 66 255 66 HOH HOH . Q 7 HOH X 67 256 67 HOH HOH . Q 7 HOH X 68 257 68 HOH HOH . Q 7 HOH X 69 258 69 HOH HOH . Q 7 HOH X 70 259 70 HOH HOH . Q 7 HOH X 71 260 71 HOH HOH . Q 7 HOH X 72 261 72 HOH HOH . Q 7 HOH X 73 262 73 HOH HOH . Q 7 HOH X 74 263 74 HOH HOH . Q 7 HOH X 75 264 75 HOH HOH . Q 7 HOH X 76 265 76 HOH HOH . Q 7 HOH X 77 266 77 HOH HOH . Q 7 HOH X 78 267 78 HOH HOH . Q 7 HOH X 79 268 79 HOH HOH . Q 7 HOH X 80 269 80 HOH HOH . Q 7 HOH X 81 270 81 HOH HOH . Q 7 HOH X 82 271 82 HOH HOH . Q 7 HOH X 83 272 83 HOH HOH . Q 7 HOH X 84 273 84 HOH HOH . Q 7 HOH X 85 274 85 HOH HOH . Q 7 HOH X 86 275 86 HOH HOH . Q 7 HOH X 87 276 87 HOH HOH . Q 7 HOH X 88 277 88 HOH HOH . Q 7 HOH X 89 278 89 HOH HOH . Q 7 HOH X 90 279 90 HOH HOH . Q 7 HOH X 91 280 91 HOH HOH . Q 7 HOH X 92 281 92 HOH HOH . Q 7 HOH X 93 282 93 HOH HOH . Q 7 HOH X 94 283 94 HOH HOH . Q 7 HOH X 95 284 95 HOH HOH . Q 7 HOH X 96 285 96 HOH HOH . Q 7 HOH X 97 286 97 HOH HOH . Q 7 HOH X 98 287 98 HOH HOH . Q 7 HOH X 99 288 99 HOH HOH . Q 7 HOH X 100 289 100 HOH HOH . Q 7 HOH X 101 290 101 HOH HOH . Q 7 HOH X 102 291 102 HOH HOH . Q 7 HOH X 103 292 103 HOH HOH . Q 7 HOH X 104 293 104 HOH HOH . Q 7 HOH X 105 294 105 HOH HOH . Q 7 HOH X 106 295 106 HOH HOH . Q 7 HOH X 107 296 107 HOH HOH . Q 7 HOH X 108 297 108 HOH HOH . Q 7 HOH X 109 298 109 HOH HOH . Q 7 HOH X 110 299 110 HOH HOH . Q 7 HOH X 111 300 111 HOH HOH . Q 7 HOH X 112 301 112 HOH HOH . Q 7 HOH X 113 302 113 HOH HOH . Q 7 HOH X 114 303 114 HOH HOH . Q 7 HOH X 115 304 115 HOH HOH . Q 7 HOH X 116 305 116 HOH HOH . Q 7 HOH X 117 306 117 HOH HOH . Q 7 HOH X 118 307 118 HOH HOH . Q 7 HOH X 119 308 119 HOH HOH . Q 7 HOH X 120 309 120 HOH HOH . Q 7 HOH X 121 310 121 HOH HOH . Q 7 HOH X 122 311 122 HOH HOH . Q 7 HOH X 123 312 123 HOH HOH . Q 7 HOH X 124 313 124 HOH HOH . Q 7 HOH X 125 314 125 HOH HOH . Q 7 HOH X 126 315 126 HOH HOH . Q 7 HOH X 127 316 127 HOH HOH . Q 7 HOH X 128 317 128 HOH HOH . Q 7 HOH X 129 318 129 HOH HOH . Q 7 HOH X 130 319 130 HOH HOH . Q 7 HOH X 131 320 131 HOH HOH . Q 7 HOH X 132 321 132 HOH HOH . Q 7 HOH X 133 322 133 HOH HOH . Q 7 HOH X 134 323 134 HOH HOH . Q 7 HOH X 135 324 135 HOH HOH . Q 7 HOH X 136 325 136 HOH HOH . Q 7 HOH X 137 326 137 HOH HOH . Q 7 HOH X 138 327 138 HOH HOH . Q 7 HOH X 139 328 139 HOH HOH . Q 7 HOH X 140 329 140 HOH HOH . Q 7 HOH X 141 330 141 HOH HOH . Q 7 HOH X 142 331 142 HOH HOH . Q 7 HOH X 143 332 143 HOH HOH . Q 7 HOH X 144 333 144 HOH HOH . Q 7 HOH X 145 334 145 HOH HOH . Q 7 HOH X 146 335 146 HOH HOH . Q 7 HOH X 147 336 147 HOH HOH . Q 7 HOH X 148 337 148 HOH HOH . Q 7 HOH X 149 338 149 HOH HOH . Q 7 HOH X 150 339 150 HOH HOH . Q 7 HOH X 151 340 151 HOH HOH . Q 7 HOH X 152 341 152 HOH HOH . Q 7 HOH X 153 342 153 HOH HOH . Q 7 HOH X 154 343 154 HOH HOH . Q 7 HOH X 155 344 155 HOH HOH . Q 7 HOH X 156 345 156 HOH HOH . Q 7 HOH X 157 346 157 HOH HOH . Q 7 HOH X 158 347 158 HOH HOH . Q 7 HOH X 159 348 159 HOH HOH . Q 7 HOH X 160 349 160 HOH HOH . Q 7 HOH X 161 350 161 HOH HOH . Q 7 HOH X 162 351 162 HOH HOH . Q 7 HOH X 163 352 163 HOH HOH . Q 7 HOH X 164 353 164 HOH HOH . Q 7 HOH X 165 354 165 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . O 6 -15.768 -53.665 12.816 1 48.86 ? C1 EDO 188 X 1 HETATM 2 O O1 EDO . . . O 6 -15.494 -52.735 13.869 1 49.35 ? O1 EDO 188 X 1 HETATM 3 C C2 EDO . . . O 6 -14.473 -54.062 12.12 1 49.07 ? C2 EDO 188 X 1 HETATM 4 O O2 EDO . . . O 6 -14.042 -55.341 12.592 1 48.65 ? O2 EDO 188 X 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #