data_3NP4
#
_model_server_result.job_id            NKUo6J3P9bkHuSJpT7RDcQ 
_model_server_result.datetime_utc      '2025-08-04 11:03:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3np4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":131}' 
#
_entry.id    3NP4 
#
_exptl.entry_id    3NP4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              122.143 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3NP4 
_cell.length_a            48.41 
_cell.length_b            55.03 
_cell.length_c            94.58 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3NP4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 3 A CYS 3 1_555 A SG CYS 26 A CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
metalc ? metalc1 A N ALA 1 A ALA 1 1_555 C CU CU . A CU 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
metalc ? metalc2 A O ALA 1 A ALA 1 1_555 C CU CU . A CU 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? 
metalc ? metalc3 A ND1 HIS 46 A HIS 46 1_555 B CU CU . A CU 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.764 ? 
metalc ? metalc4 A OD2 ASP 112 A ASP 112 1_555 B CU CU . A CU 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.723 ? 
metalc ? metalc5 A ND1 HIS 117 A HIS 117 1_555 B CU CU . A CU 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? 
metalc ? metalc6 A OE1 GLU 121 A GLU 121 1_555 B CU CU . A CU 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? 
metalc ? metalc7 C CU CU . A CU 130 1_555 D N TRS . A TRS 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? 
metalc ? metalc8 C CU CU . A CU 130 1_555 D O2 TRS . A TRS 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? 
metalc ? metalc9 C CU CU . A CU 130 1_555 E O HOH . A HOH 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? 
metalc ? metalc10 C CU CU . A CU 130 1_555 E O HOH . A HOH 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? 
#
_chem_comp.formula           'C4 H12 N O3 1' 
_chem_comp.formula_weight    122.143 
_chem_comp.id                TRS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'TRIS BUFFER' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C C1 TRS sing 334 n n 
C C2 TRS sing 335 n n 
C C3 TRS sing 336 n n 
C N TRS sing 337 n n 
C1 O1 TRS sing 338 n n 
C1 H11 TRS sing 339 n n 
C1 H12 TRS sing 340 n n 
C2 O2 TRS sing 341 n n 
C2 H21 TRS sing 342 n n 
C2 H22 TRS sing 343 n n 
C3 O3 TRS sing 344 n n 
C3 H31 TRS sing 345 n n 
C3 H32 TRS sing 346 n n 
N HN1 TRS sing 347 n n 
N HN2 TRS sing 348 n n 
N HN3 TRS sing 349 n n 
O1 HO1 TRS sing 350 n n 
O2 HO2 TRS sing 351 n n 
O3 HO3 TRS sing 352 n n 
#
_atom_sites.entry_id                     3NP4 
_atom_sites.fract_transf_matrix[1][1]    0.020657 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018172 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010573 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CU A 1 129 1 CU CU . 
C 2 CU A 1 130 2 CU CU . 
D 3 TRS A 1 131 1 TRS TRS . 
E 4 HOH A 1 132 1 HOH HOH . 
E 4 HOH A 2 133 2 HOH HOH . 
E 4 HOH A 3 134 3 HOH HOH . 
E 4 HOH A 4 135 4 HOH HOH . 
E 4 HOH A 5 136 6 HOH HOH . 
E 4 HOH A 6 137 10 HOH HOH . 
E 4 HOH A 7 138 11 HOH HOH . 
E 4 HOH A 8 139 12 HOH HOH . 
E 4 HOH A 9 140 14 HOH HOH . 
E 4 HOH A 10 141 15 HOH HOH . 
E 4 HOH A 11 142 16 HOH HOH . 
E 4 HOH A 12 143 17 HOH HOH . 
E 4 HOH A 13 144 19 HOH HOH . 
E 4 HOH A 14 145 20 HOH HOH . 
E 4 HOH A 15 146 21 HOH HOH . 
E 4 HOH A 16 147 22 HOH HOH . 
E 4 HOH A 17 148 23 HOH HOH . 
E 4 HOH A 18 149 24 HOH HOH . 
E 4 HOH A 19 150 25 HOH HOH . 
E 4 HOH A 20 151 26 HOH HOH . 
E 4 HOH A 21 152 27 HOH HOH . 
E 4 HOH A 22 153 28 HOH HOH . 
E 4 HOH A 23 154 29 HOH HOH . 
E 4 HOH A 24 155 30 HOH HOH . 
E 4 HOH A 25 156 31 HOH HOH . 
E 4 HOH A 26 157 32 HOH HOH . 
E 4 HOH A 27 158 33 HOH HOH . 
E 4 HOH A 28 159 34 HOH HOH . 
E 4 HOH A 29 160 35 HOH HOH . 
E 4 HOH A 30 161 36 HOH HOH . 
E 4 HOH A 31 162 37 HOH HOH . 
E 4 HOH A 32 163 38 HOH HOH . 
E 4 HOH A 33 164 39 HOH HOH . 
E 4 HOH A 34 165 40 HOH HOH . 
E 4 HOH A 35 166 41 HOH HOH . 
E 4 HOH A 36 167 42 HOH HOH . 
E 4 HOH A 37 168 43 HOH HOH . 
E 4 HOH A 38 169 44 HOH HOH . 
E 4 HOH A 39 170 45 HOH HOH . 
E 4 HOH A 40 171 46 HOH HOH . 
E 4 HOH A 41 172 47 HOH HOH . 
E 4 HOH A 42 173 48 HOH HOH . 
E 4 HOH A 43 174 49 HOH HOH . 
E 4 HOH A 44 175 50 HOH HOH . 
E 4 HOH A 45 176 51 HOH HOH . 
E 4 HOH A 46 177 52 HOH HOH . 
E 4 HOH A 47 178 53 HOH HOH . 
E 4 HOH A 48 179 54 HOH HOH . 
E 4 HOH A 49 180 55 HOH HOH . 
E 4 HOH A 50 181 56 HOH HOH . 
E 4 HOH A 51 182 1 HOH HOH . 
E 4 HOH A 52 183 2 HOH HOH . 
E 4 HOH A 53 184 3 HOH HOH . 
E 4 HOH A 54 185 4 HOH HOH . 
E 4 HOH A 55 186 5 HOH HOH . 
E 4 HOH A 56 187 6 HOH HOH . 
E 4 HOH A 57 188 8 HOH HOH . 
E 4 HOH A 58 189 12 HOH HOH . 
E 4 HOH A 59 190 13 HOH HOH . 
E 4 HOH A 60 191 14 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C TRS . . . D 3 -24.718 10.159 4.964 1 30.67 ? C TRS 131 A 1 
HETATM 2 C C1 TRS . . . D 3 -24.255 9.084 3.983 1 30.97 ? C1 TRS 131 A 1 
HETATM 3 C C2 TRS . . . D 3 -26.068 9.804 5.546 1 29.17 ? C2 TRS 131 A 1 
HETATM 4 C C3 TRS . . . D 3 -23.721 10.38 6.107 1 30.11 ? C3 TRS 131 A 1 
HETATM 5 N N TRS . . . D 3 -24.857 11.418 4.254 1 28.69 ? N TRS 131 A 1 
HETATM 6 O O1 TRS . . . D 3 -23.006 9.487 3.457 1 33.94 ? O1 TRS 131 A 1 
HETATM 7 O O2 TRS . . . D 3 -27.079 9.732 4.553 1 30.97 ? O2 TRS 131 A 1 
HETATM 8 O O3 TRS . . . D 3 -23.785 9.206 6.887 1 32.1 ? O3 TRS 131 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    1 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           8 
#