data_3NP5 # _model_server_result.job_id pLshIv1C-Fl34FWsgNC92g _model_server_result.datetime_utc '2025-08-31 13:50:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3np5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":732}' # _entry.id 3NP5 # _exptl.entry_id 3NP5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3NP5 _cell.length_a 44.662 _cell.length_b 44.662 _cell.length_c 168.665 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NP5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1 A,E,G 2 1 C,I 2 2 B,H 3 1 D,F,J 3 3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_655 x+1,y,z 1 0 0 0 1 0 0 0 1 44.662 0 0 3 'crystal symmetry operation' 1_545 x,y-1,z 1 0 0 0 1 0 0 0 1 0 -44.662 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 60 A ASP 529 1_555 E CA CA . A CA 732 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? metalc ? metalc2 A OE1 GLN 63 A GLN 532 1_555 E CA CA . A CA 732 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc3 E CA CA . A CA 732 1_555 H O HOH . B HOH 693 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc4 E CA CA . A CA 732 1_555 C OD1 ASP 60 C ASP 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc5 E CA CA . A CA 732 1_555 C OD2 ASP 60 C ASP 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc6 D OG SER 31 D SER 500 1_555 F CA CA . D CA 732 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.737 ? metalc ? metalc7 J O HOH . D HOH 723 1_555 F CA CA . D CA 732 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.931 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3NP5 _atom_sites.fract_transf_matrix[1][1] 0.02239 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02239 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005929 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 CA A 1 732 732 CA CA . F 2 CA D 1 732 732 CA CA . G 3 HOH A 1 600 600 HOH HOH . G 3 HOH A 2 601 601 HOH HOH . G 3 HOH A 3 602 602 HOH HOH . G 3 HOH A 4 603 603 HOH HOH . G 3 HOH A 5 604 604 HOH HOH . G 3 HOH A 6 605 605 HOH HOH . G 3 HOH A 7 606 606 HOH HOH . G 3 HOH A 8 607 607 HOH HOH . G 3 HOH A 9 608 608 HOH HOH . G 3 HOH A 10 609 609 HOH HOH . G 3 HOH A 11 610 610 HOH HOH . G 3 HOH A 12 611 611 HOH HOH . G 3 HOH A 13 612 612 HOH HOH . G 3 HOH A 14 613 613 HOH HOH . G 3 HOH A 15 614 614 HOH HOH . G 3 HOH A 16 615 615 HOH HOH . G 3 HOH A 17 616 616 HOH HOH . G 3 HOH A 18 618 618 HOH HOH . G 3 HOH A 19 619 619 HOH HOH . G 3 HOH A 20 620 620 HOH HOH . G 3 HOH A 21 621 621 HOH HOH . G 3 HOH A 22 623 623 HOH HOH . G 3 HOH A 23 649 649 HOH HOH . G 3 HOH A 24 656 656 HOH HOH . H 3 HOH B 1 617 617 HOH HOH . H 3 HOH B 2 622 622 HOH HOH . H 3 HOH B 3 624 624 HOH HOH . H 3 HOH B 4 625 625 HOH HOH . H 3 HOH B 5 627 627 HOH HOH . H 3 HOH B 6 628 628 HOH HOH . H 3 HOH B 7 629 629 HOH HOH . H 3 HOH B 8 630 630 HOH HOH . H 3 HOH B 9 631 631 HOH HOH . H 3 HOH B 10 632 632 HOH HOH . H 3 HOH B 11 633 633 HOH HOH . H 3 HOH B 12 634 634 HOH HOH . H 3 HOH B 13 636 636 HOH HOH . H 3 HOH B 14 637 637 HOH HOH . H 3 HOH B 15 638 638 HOH HOH . H 3 HOH B 16 639 639 HOH HOH . H 3 HOH B 17 640 640 HOH HOH . H 3 HOH B 18 641 641 HOH HOH . H 3 HOH B 19 642 642 HOH HOH . H 3 HOH B 20 643 643 HOH HOH . H 3 HOH B 21 644 644 HOH HOH . H 3 HOH B 22 645 645 HOH HOH . H 3 HOH B 23 646 646 HOH HOH . H 3 HOH B 24 651 651 HOH HOH . H 3 HOH B 25 681 681 HOH HOH . H 3 HOH B 26 693 693 HOH HOH . H 3 HOH B 27 708 708 HOH HOH . I 3 HOH C 1 647 647 HOH HOH . I 3 HOH C 2 653 653 HOH HOH . I 3 HOH C 3 654 654 HOH HOH . I 3 HOH C 4 655 655 HOH HOH . I 3 HOH C 5 657 657 HOH HOH . I 3 HOH C 6 658 658 HOH HOH . I 3 HOH C 7 659 659 HOH HOH . I 3 HOH C 8 660 660 HOH HOH . I 3 HOH C 9 661 661 HOH HOH . I 3 HOH C 10 662 662 HOH HOH . I 3 HOH C 11 663 663 HOH HOH . I 3 HOH C 12 664 664 HOH HOH . I 3 HOH C 13 665 665 HOH HOH . I 3 HOH C 14 667 667 HOH HOH . I 3 HOH C 15 668 668 HOH HOH . I 3 HOH C 16 671 671 HOH HOH . I 3 HOH C 17 672 672 HOH HOH . I 3 HOH C 18 673 673 HOH HOH . I 3 HOH C 19 674 674 HOH HOH . I 3 HOH C 20 676 676 HOH HOH . I 3 HOH C 21 677 677 HOH HOH . I 3 HOH C 22 678 678 HOH HOH . I 3 HOH C 23 680 680 HOH HOH . I 3 HOH C 24 682 682 HOH HOH . I 3 HOH C 25 684 684 HOH HOH . I 3 HOH C 26 685 685 HOH HOH . I 3 HOH C 27 686 686 HOH HOH . I 3 HOH C 28 687 687 HOH HOH . I 3 HOH C 29 688 688 HOH HOH . I 3 HOH C 30 690 690 HOH HOH . I 3 HOH C 31 691 691 HOH HOH . I 3 HOH C 32 692 692 HOH HOH . I 3 HOH C 33 694 694 HOH HOH . I 3 HOH C 34 695 695 HOH HOH . I 3 HOH C 35 696 696 HOH HOH . I 3 HOH C 36 697 697 HOH HOH . I 3 HOH C 37 715 715 HOH HOH . I 3 HOH C 38 719 719 HOH HOH . I 3 HOH C 39 720 720 HOH HOH . J 3 HOH D 1 626 626 HOH HOH . J 3 HOH D 2 635 635 HOH HOH . J 3 HOH D 3 648 648 HOH HOH . J 3 HOH D 4 650 650 HOH HOH . J 3 HOH D 5 652 652 HOH HOH . J 3 HOH D 6 666 666 HOH HOH . J 3 HOH D 7 669 669 HOH HOH . J 3 HOH D 8 670 670 HOH HOH . J 3 HOH D 9 675 675 HOH HOH . J 3 HOH D 10 679 679 HOH HOH . J 3 HOH D 11 683 683 HOH HOH . J 3 HOH D 12 689 689 HOH HOH . J 3 HOH D 13 698 698 HOH HOH . J 3 HOH D 14 699 699 HOH HOH . J 3 HOH D 15 700 700 HOH HOH . J 3 HOH D 16 701 701 HOH HOH . J 3 HOH D 17 702 702 HOH HOH . J 3 HOH D 18 703 703 HOH HOH . J 3 HOH D 19 704 704 HOH HOH . J 3 HOH D 20 705 705 HOH HOH . J 3 HOH D 21 706 706 HOH HOH . J 3 HOH D 22 707 707 HOH HOH . J 3 HOH D 23 709 709 HOH HOH . J 3 HOH D 24 710 710 HOH HOH . J 3 HOH D 25 711 711 HOH HOH . J 3 HOH D 26 712 712 HOH HOH . J 3 HOH D 27 713 713 HOH HOH . J 3 HOH D 28 714 714 HOH HOH . J 3 HOH D 29 716 716 HOH HOH . J 3 HOH D 30 717 717 HOH HOH . J 3 HOH D 31 718 718 HOH HOH . J 3 HOH D 32 721 721 HOH HOH . J 3 HOH D 33 722 722 HOH HOH . J 3 HOH D 34 723 723 HOH HOH . J 3 HOH D 35 724 724 HOH HOH . J 3 HOH D 36 725 725 HOH HOH . J 3 HOH D 37 726 726 HOH HOH . J 3 HOH D 38 727 727 HOH HOH . J 3 HOH D 39 728 728 HOH HOH . J 3 HOH D 40 729 729 HOH HOH . J 3 HOH D 41 730 730 HOH HOH . J 3 HOH D 42 731 731 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 2 _atom_site.Cartn_x 10.506 _atom_site.Cartn_y 38.787 _atom_site.Cartn_z 27.001 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 21.43 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 732 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 413 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #