data_3NPE
#
_model_server_result.job_id            NfHmFD295Nmp9KEA2Imt1g 
_model_server_result.datetime_utc      '2024-11-05 00:29:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3npe 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":2948}' 
#
_entry.id    3NPE 
#
_exptl.entry_id    3NPE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              88.105 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '1,4-DIETHYLENE DIOXIDE' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3NPE 
_cell.length_a            161.521 
_cell.length_b            161.521 
_cell.length_c            150.816 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3NPE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        182 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 E N N 
? 5 F N N 
? 5 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 335 A CYS 410 1_555 A SG CYS 356 A CYS 431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? 
metalc ? metalc1 C O2 OXY . A OXY 1 1_555 B FE FE2 . A FE2 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
metalc ? metalc2 D O OH . A OH 2 1_555 B FE FE2 . A FE2 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
metalc ? metalc3 A NE2 HIS 223 A HIS 298 1_555 B FE FE2 . A FE2 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.857 ? 
metalc ? metalc4 A NE2 HIS 272 A HIS 347 1_555 B FE FE2 . A FE2 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.877 ? 
metalc ? metalc5 A NE2 HIS 337 A HIS 412 1_555 B FE FE2 . A FE2 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.865 ? 
metalc ? metalc6 A NE2 HIS 515 A HIS 590 1_555 B FE FE2 . A FE2 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.887 ? 
#
_chem_comp.formula           'C4 H8 O2' 
_chem_comp.formula_weight    88.105 
_chem_comp.id                DIO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '1,4-DIETHYLENE DIOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C1' DIO sing 83 n n 
C1 O1 DIO sing 84 n n 
C1 H11 DIO sing 85 n n 
C1 H12 DIO sing 86 n n 
C2 C2' DIO sing 87 n n 
C2 O1 DIO sing 88 n n 
C2 H21 DIO sing 89 n n 
C2 H22 DIO sing 90 n n 
C1' O1' DIO sing 91 n n 
C1' "H1'1" DIO sing 92 n n 
C1' "H1'2" DIO sing 93 n n 
C2' O1' DIO sing 94 n n 
C2' "H2'1" DIO sing 95 n n 
C2' "H2'2" DIO sing 96 n n 
#
_atom_sites.entry_id                     3NPE 
_atom_sites.fract_transf_matrix[1][1]    0.006191 
_atom_sites.fract_transf_matrix[1][2]    0.003574 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007149 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006631 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FE2 A 1 605 605 FE2 FE2 . 
C 3 OXY A 1 1 1 OXY OXY . 
D 4 OH A 1 2 2 OH OH . 
E 5 DIO A 1 2946 2946 DIO DOX . 
F 5 DIO A 1 2947 2947 DIO DOX . 
G 5 DIO A 1 2948 2948 DIO DOX . 
H 6 HOH A 1 3 3 HOH HOH . 
H 6 HOH A 2 4 4 HOH HOH . 
H 6 HOH A 3 5 5 HOH HOH . 
H 6 HOH A 4 6 6 HOH HOH . 
H 6 HOH A 5 7 7 HOH HOH . 
H 6 HOH A 6 8 8 HOH HOH . 
H 6 HOH A 7 9 9 HOH HOH . 
H 6 HOH A 8 10 10 HOH HOH . 
H 6 HOH A 9 606 1 HOH HOH . 
H 6 HOH A 10 607 2 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 DIO . . . G 5 17.742 71.728 70.644 1 145.39 ? C1 DIO 2948 A 1 
HETATM 2 C C2 DIO . . . G 5 15.744 71.536 69.281 1 144.54 ? C2 DIO 2948 A 1 
HETATM 3 C C1' DIO . . . G 5 17.702 70.214 71.02 1 142.36 ? C1' DIO 2948 A 1 
HETATM 4 C C2' DIO . . . G 5 15.687 70.01 69.587 1 142.53 ? C2' DIO 2948 A 1 
HETATM 5 O O1 DIO . . . G 5 16.391 72.227 70.389 1 144.41 ? O1 DIO 2948 A 1 
HETATM 6 O O1' DIO . . . G 5 16.983 69.442 69.995 1 143.19 ? O1' DIO 2948 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           324 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#