data_3NQ3 # _model_server_result.job_id j6hHA01kSh-ZZcHP0ZdakQ _model_server_result.datetime_utc '2025-01-10 21:54:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nq3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":3968}' # _entry.id 3NQ3 # _exptl.entry_id 3NQ3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3NQ3 _cell.length_a 53.5 _cell.length_b 53.5 _cell.length_c 112.14 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NQ3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 66 A CYS 66 1_555 A SG CYS 160 A CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 106 A CYS 106 1_555 A SG CYS 119 A CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 160 n n C1 C2 GOL sing 161 n n C1 H11 GOL sing 162 n n C1 H12 GOL sing 163 n n O1 HO1 GOL sing 164 n n C2 O2 GOL sing 165 n n C2 C3 GOL sing 166 n n C2 H2 GOL sing 167 n n O2 HO2 GOL sing 168 n n C3 O3 GOL sing 169 n n C3 H31 GOL sing 170 n n C3 H32 GOL sing 171 n n O3 HO3 GOL sing 172 n n # _atom_sites.entry_id 3NQ3 _atom_sites.fract_transf_matrix[1][1] 0.018692 _atom_sites.fract_transf_matrix[1][2] 0.010792 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021583 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008917 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DKA A 1 3053 3053 DKA DKA . C 3 GOL A 1 3968 3968 GOL GOL . D 4 CL A 1 163 163 CL CL . E 5 HOH A 1 1000 1000 HOH HOH . E 5 HOH A 2 1001 165 HOH HOH . E 5 HOH A 3 1002 166 HOH HOH . E 5 HOH A 4 1003 167 HOH HOH . E 5 HOH A 5 1004 168 HOH HOH . E 5 HOH A 6 1005 169 HOH HOH . E 5 HOH A 7 1006 170 HOH HOH . E 5 HOH A 8 1007 171 HOH HOH . E 5 HOH A 9 1008 172 HOH HOH . E 5 HOH A 10 1009 173 HOH HOH . E 5 HOH A 11 1010 174 HOH HOH . E 5 HOH A 12 1011 175 HOH HOH . E 5 HOH A 13 1012 176 HOH HOH . E 5 HOH A 14 1013 177 HOH HOH . E 5 HOH A 15 1014 178 HOH HOH . E 5 HOH A 16 1015 179 HOH HOH . E 5 HOH A 17 1016 180 HOH HOH . E 5 HOH A 18 1017 181 HOH HOH . E 5 HOH A 19 1018 182 HOH HOH . E 5 HOH A 20 1019 183 HOH HOH . E 5 HOH A 21 1020 184 HOH HOH . E 5 HOH A 22 1021 185 HOH HOH . E 5 HOH A 23 1022 186 HOH HOH . E 5 HOH A 24 1023 187 HOH HOH . E 5 HOH A 25 1024 188 HOH HOH . E 5 HOH A 26 1025 189 HOH HOH . E 5 HOH A 27 1026 190 HOH HOH . E 5 HOH A 28 1027 191 HOH HOH . E 5 HOH A 29 1028 192 HOH HOH . E 5 HOH A 30 1029 193 HOH HOH . E 5 HOH A 31 1030 194 HOH HOH . E 5 HOH A 32 1031 195 HOH HOH . E 5 HOH A 33 1032 196 HOH HOH . E 5 HOH A 34 1033 197 HOH HOH . E 5 HOH A 35 1034 198 HOH HOH . E 5 HOH A 36 1035 199 HOH HOH . E 5 HOH A 37 1036 200 HOH HOH . E 5 HOH A 38 1037 201 HOH HOH . E 5 HOH A 39 1038 202 HOH HOH . E 5 HOH A 40 1039 203 HOH HOH . E 5 HOH A 41 1040 204 HOH HOH . E 5 HOH A 42 1041 205 HOH HOH . E 5 HOH A 43 1042 206 HOH HOH . E 5 HOH A 44 1043 207 HOH HOH . E 5 HOH A 45 1044 208 HOH HOH . E 5 HOH A 46 1045 209 HOH HOH . E 5 HOH A 47 1046 210 HOH HOH . E 5 HOH A 48 1047 211 HOH HOH . E 5 HOH A 49 1048 212 HOH HOH . E 5 HOH A 50 1049 213 HOH HOH . E 5 HOH A 51 1050 214 HOH HOH . E 5 HOH A 52 1051 215 HOH HOH . E 5 HOH A 53 1052 216 HOH HOH . E 5 HOH A 54 1053 217 HOH HOH . E 5 HOH A 55 1054 218 HOH HOH . E 5 HOH A 56 1055 219 HOH HOH . E 5 HOH A 57 1056 220 HOH HOH . E 5 HOH A 58 1057 221 HOH HOH . E 5 HOH A 59 1058 222 HOH HOH . E 5 HOH A 60 1059 223 HOH HOH . E 5 HOH A 61 1060 224 HOH HOH . E 5 HOH A 62 1061 225 HOH HOH . E 5 HOH A 63 1062 226 HOH HOH . E 5 HOH A 64 1063 227 HOH HOH . E 5 HOH A 65 1064 228 HOH HOH . E 5 HOH A 66 1065 229 HOH HOH . E 5 HOH A 67 1066 230 HOH HOH . E 5 HOH A 68 1067 231 HOH HOH . E 5 HOH A 69 1068 232 HOH HOH . E 5 HOH A 70 1069 233 HOH HOH . E 5 HOH A 71 1070 234 HOH HOH . E 5 HOH A 72 1071 235 HOH HOH . E 5 HOH A 73 1072 236 HOH HOH . E 5 HOH A 74 1073 237 HOH HOH . E 5 HOH A 75 1074 238 HOH HOH . E 5 HOH A 76 1075 239 HOH HOH . E 5 HOH A 77 1076 240 HOH HOH . E 5 HOH A 78 1077 241 HOH HOH . E 5 HOH A 79 1078 242 HOH HOH . E 5 HOH A 80 1079 243 HOH HOH . E 5 HOH A 81 1080 244 HOH HOH . E 5 HOH A 82 1081 245 HOH HOH . E 5 HOH A 83 1082 246 HOH HOH . E 5 HOH A 84 1083 247 HOH HOH . E 5 HOH A 85 1084 248 HOH HOH . E 5 HOH A 86 1085 249 HOH HOH . E 5 HOH A 87 1086 250 HOH HOH . E 5 HOH A 88 1087 251 HOH HOH . E 5 HOH A 89 1088 252 HOH HOH . E 5 HOH A 90 1089 253 HOH HOH . E 5 HOH A 91 1090 254 HOH HOH . E 5 HOH A 92 1091 255 HOH HOH . E 5 HOH A 93 1092 256 HOH HOH . E 5 HOH A 94 1093 257 HOH HOH . E 5 HOH A 95 1094 258 HOH HOH . E 5 HOH A 96 1095 259 HOH HOH . E 5 HOH A 97 1096 260 HOH HOH . E 5 HOH A 98 1097 261 HOH HOH . E 5 HOH A 99 1098 262 HOH HOH . E 5 HOH A 100 1099 263 HOH HOH . E 5 HOH A 101 1100 264 HOH HOH . E 5 HOH A 102 1101 265 HOH HOH . E 5 HOH A 103 1102 266 HOH HOH . E 5 HOH A 104 1103 267 HOH HOH . E 5 HOH A 105 1104 268 HOH HOH . E 5 HOH A 106 1105 269 HOH HOH . E 5 HOH A 107 1106 270 HOH HOH . E 5 HOH A 108 1107 271 HOH HOH . E 5 HOH A 109 1108 272 HOH HOH . E 5 HOH A 110 1109 273 HOH HOH . E 5 HOH A 111 1110 274 HOH HOH . E 5 HOH A 112 1111 275 HOH HOH . E 5 HOH A 113 1112 276 HOH HOH . E 5 HOH A 114 1113 277 HOH HOH . E 5 HOH A 115 1114 278 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 29.155 -0.339 3.98 0.6 16.71 ? C1 GOL 3968 A 1 HETATM 2 O O1 GOL . . . C 3 27.878 0.251 4.047 0.6 15.57 ? O1 GOL 3968 A 1 HETATM 3 C C2 GOL . . . C 3 29.739 -0.109 2.593 0.6 19.52 ? C2 GOL 3968 A 1 HETATM 4 O O2 GOL . . . C 3 28.729 0.231 1.669 0.6 22.52 ? O2 GOL 3968 A 1 HETATM 5 C C3 GOL . . . C 3 30.521 -1.314 2.081 0.6 21.83 ? C3 GOL 3968 A 1 HETATM 6 O O3 GOL . . . C 3 30.267 -1.461 0.696 0.6 22.8 ? O3 GOL 3968 A 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #