data_3NQ9
#
_model_server_result.job_id            4Huk1FQW3SzZ3dCXSAFNfw 
_model_server_result.datetime_utc      '2025-01-11 02:17:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3nq9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1111}' 
#
_entry.id    3NQ9 
#
_exptl.entry_id    3NQ9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              144.211 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'OCTANOIC ACID (CAPRYLIC ACID)' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3NQ9 
_cell.length_a            53.47 
_cell.length_b            53.47 
_cell.length_c            112.06 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3NQ9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 66 A CYS 66 1_555 A SG CYS 160 A CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 A SG CYS 106 A CYS 106 1_555 A SG CYS 119 A CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? 
#
_chem_comp.formula           'C8 H16 O2' 
_chem_comp.formula_weight    144.211 
_chem_comp.id                OCA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'OCTANOIC ACID (CAPRYLIC ACID)' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 OCA sing 237 n n 
C1 O1 OCA doub 238 n n 
C1 O2 OCA sing 239 n n 
C2 C3 OCA sing 240 n n 
C2 H21 OCA sing 241 n n 
C2 H22 OCA sing 242 n n 
C3 C4 OCA sing 243 n n 
C3 H31 OCA sing 244 n n 
C3 H32 OCA sing 245 n n 
C4 C5 OCA sing 246 n n 
C4 H41 OCA sing 247 n n 
C4 H42 OCA sing 248 n n 
C5 C6 OCA sing 249 n n 
C5 H51 OCA sing 250 n n 
C5 H52 OCA sing 251 n n 
C6 C7 OCA sing 252 n n 
C6 H61 OCA sing 253 n n 
C6 H62 OCA sing 254 n n 
C7 C8 OCA sing 255 n n 
C7 H71 OCA sing 256 n n 
C7 H72 OCA sing 257 n n 
C8 H81 OCA sing 258 n n 
C8 H82 OCA sing 259 n n 
C8 H83 OCA sing 260 n n 
O2 HO2 OCA sing 261 n n 
#
_atom_sites.entry_id                     3NQ9 
_atom_sites.fract_transf_matrix[1][1]    0.018702 
_atom_sites.fract_transf_matrix[1][2]    0.010798 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.021595 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008924 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 OCA A 1 1111 1111 OCA OCA . 
C 3 CL A 1 163 163 CL CL . 
D 4 HOH A 1 1000 1000 HOH HOH . 
D 4 HOH A 2 1001 165 HOH HOH . 
D 4 HOH A 3 1002 166 HOH HOH . 
D 4 HOH A 4 1003 167 HOH HOH . 
D 4 HOH A 5 1004 168 HOH HOH . 
D 4 HOH A 6 1005 169 HOH HOH . 
D 4 HOH A 7 1006 170 HOH HOH . 
D 4 HOH A 8 1007 171 HOH HOH . 
D 4 HOH A 9 1008 172 HOH HOH . 
D 4 HOH A 10 1009 173 HOH HOH . 
D 4 HOH A 11 1010 174 HOH HOH . 
D 4 HOH A 12 1011 175 HOH HOH . 
D 4 HOH A 13 1012 176 HOH HOH . 
D 4 HOH A 14 1013 177 HOH HOH . 
D 4 HOH A 15 1014 178 HOH HOH . 
D 4 HOH A 16 1015 179 HOH HOH . 
D 4 HOH A 17 1016 180 HOH HOH . 
D 4 HOH A 18 1017 181 HOH HOH . 
D 4 HOH A 19 1018 182 HOH HOH . 
D 4 HOH A 20 1019 183 HOH HOH . 
D 4 HOH A 21 1020 184 HOH HOH . 
D 4 HOH A 22 1021 185 HOH HOH . 
D 4 HOH A 23 1022 186 HOH HOH . 
D 4 HOH A 24 1023 187 HOH HOH . 
D 4 HOH A 25 1024 188 HOH HOH . 
D 4 HOH A 26 1025 189 HOH HOH . 
D 4 HOH A 27 1026 190 HOH HOH . 
D 4 HOH A 28 1027 191 HOH HOH . 
D 4 HOH A 29 1028 192 HOH HOH . 
D 4 HOH A 30 1029 193 HOH HOH . 
D 4 HOH A 31 1030 194 HOH HOH . 
D 4 HOH A 32 1031 195 HOH HOH . 
D 4 HOH A 33 1032 196 HOH HOH . 
D 4 HOH A 34 1033 197 HOH HOH . 
D 4 HOH A 35 1034 198 HOH HOH . 
D 4 HOH A 36 1035 199 HOH HOH . 
D 4 HOH A 37 1036 200 HOH HOH . 
D 4 HOH A 38 1037 201 HOH HOH . 
D 4 HOH A 39 1038 202 HOH HOH . 
D 4 HOH A 40 1039 203 HOH HOH . 
D 4 HOH A 41 1040 204 HOH HOH . 
D 4 HOH A 42 1041 205 HOH HOH . 
D 4 HOH A 43 1042 206 HOH HOH . 
D 4 HOH A 44 1043 207 HOH HOH . 
D 4 HOH A 45 1044 208 HOH HOH . 
D 4 HOH A 46 1045 209 HOH HOH . 
D 4 HOH A 47 1046 210 HOH HOH . 
D 4 HOH A 48 1047 211 HOH HOH . 
D 4 HOH A 49 1048 212 HOH HOH . 
D 4 HOH A 50 1049 213 HOH HOH . 
D 4 HOH A 51 1050 214 HOH HOH . 
D 4 HOH A 52 1051 215 HOH HOH . 
D 4 HOH A 53 1052 216 HOH HOH . 
D 4 HOH A 54 1053 217 HOH HOH . 
D 4 HOH A 55 1054 218 HOH HOH . 
D 4 HOH A 56 1055 219 HOH HOH . 
D 4 HOH A 57 1056 220 HOH HOH . 
D 4 HOH A 58 1057 221 HOH HOH . 
D 4 HOH A 59 1058 222 HOH HOH . 
D 4 HOH A 60 1059 223 HOH HOH . 
D 4 HOH A 61 1060 224 HOH HOH . 
D 4 HOH A 62 1061 225 HOH HOH . 
D 4 HOH A 63 1062 226 HOH HOH . 
D 4 HOH A 64 1063 227 HOH HOH . 
D 4 HOH A 65 1064 228 HOH HOH . 
D 4 HOH A 66 1065 229 HOH HOH . 
D 4 HOH A 67 1066 230 HOH HOH . 
D 4 HOH A 68 1067 231 HOH HOH . 
D 4 HOH A 69 1068 232 HOH HOH . 
D 4 HOH A 70 1069 233 HOH HOH . 
D 4 HOH A 71 1070 234 HOH HOH . 
D 4 HOH A 72 1071 235 HOH HOH . 
D 4 HOH A 73 1072 236 HOH HOH . 
D 4 HOH A 74 1073 237 HOH HOH . 
D 4 HOH A 75 1074 238 HOH HOH . 
D 4 HOH A 76 1075 239 HOH HOH . 
D 4 HOH A 77 1076 240 HOH HOH . 
D 4 HOH A 78 1077 241 HOH HOH . 
D 4 HOH A 79 1078 242 HOH HOH . 
D 4 HOH A 80 1079 243 HOH HOH . 
D 4 HOH A 81 1080 244 HOH HOH . 
D 4 HOH A 82 1081 245 HOH HOH . 
D 4 HOH A 83 1082 246 HOH HOH . 
D 4 HOH A 84 1083 247 HOH HOH . 
D 4 HOH A 85 1084 248 HOH HOH . 
D 4 HOH A 86 1085 249 HOH HOH . 
D 4 HOH A 87 1086 250 HOH HOH . 
D 4 HOH A 88 1087 251 HOH HOH . 
D 4 HOH A 89 1088 252 HOH HOH . 
D 4 HOH A 90 1089 253 HOH HOH . 
D 4 HOH A 91 1090 254 HOH HOH . 
D 4 HOH A 92 1091 255 HOH HOH . 
D 4 HOH A 93 1092 256 HOH HOH . 
D 4 HOH A 94 1093 257 HOH HOH . 
D 4 HOH A 95 1094 258 HOH HOH . 
D 4 HOH A 96 1095 259 HOH HOH . 
D 4 HOH A 97 1096 260 HOH HOH . 
D 4 HOH A 98 1097 261 HOH HOH . 
D 4 HOH A 99 1098 262 HOH HOH . 
D 4 HOH A 100 1099 263 HOH HOH . 
D 4 HOH A 101 1100 264 HOH HOH . 
D 4 HOH A 102 1101 265 HOH HOH . 
D 4 HOH A 103 1102 266 HOH HOH . 
D 4 HOH A 104 1103 267 HOH HOH . 
D 4 HOH A 105 1104 268 HOH HOH . 
D 4 HOH A 106 1105 269 HOH HOH . 
D 4 HOH A 107 1106 270 HOH HOH . 
D 4 HOH A 108 1107 271 HOH HOH . 
D 4 HOH A 109 1108 272 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 OCA . . . B 2 -3.183 -3.262 -17.078 0.7 41.06 ? C1 OCA 1111 A 1 
HETATM 2 C C2 OCA . . . B 2 -2.654 -4.561 -17.635 0.7 37.81 ? C2 OCA 1111 A 1 
HETATM 3 C C3 OCA . . . B 2 -3.803 -5.526 -17.929 0.7 36.56 ? C3 OCA 1111 A 1 
HETATM 4 C C4 OCA . . . B 2 -3.921 -6.587 -16.845 0.7 32.69 ? C4 OCA 1111 A 1 
HETATM 5 C C5 OCA . . . B 2 -5.329 -7.172 -16.813 0.7 32.52 ? C5 OCA 1111 A 1 
HETATM 6 C C6 OCA . . . B 2 -5.785 -7.623 -18.189 0.7 27.98 ? C6 OCA 1111 A 1 
HETATM 7 C C7 OCA . . . B 2 -7.305 -7.703 -18.268 0.7 27.14 ? C7 OCA 1111 A 1 
HETATM 8 C C8 OCA . . . B 2 -7.711 -9.049 -18.823 0.7 28.47 ? C8 OCA 1111 A 1 
HETATM 9 O O1 OCA . . . B 2 -4.308 -2.848 -17.45 0.7 41.95 ? O1 OCA 1111 A 1 
HETATM 10 O O2 OCA . . . B 2 -2.475 -2.646 -16.256 0.7 40.66 ? O2 OCA 1111 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           292 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           10 
#