data_3NQJ # _model_server_result.job_id lzmcUxZWTuWyKYIDUdUUTw _model_server_result.datetime_utc '2024-11-25 16:46:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nqj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1}' # _entry.id 3NQJ # _exptl.entry_id 3NQJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3NQJ _cell.length_a 62.869 _cell.length_b 62.869 _cell.length_c 159.512 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NQJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 31.4345 54.446151 26.585333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 260 n n P O2 PO4 sing 261 n n P O3 PO4 sing 262 n n P O4 PO4 sing 263 n n # _atom_sites.entry_id 3NQJ _atom_sites.fract_transf_matrix[1][1] 0.015906 _atom_sites.fract_transf_matrix[1][2] 0.009183 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018367 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006269 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PO4 A 1 4 4 PO4 PO4 . D 3 PO4 B 1 1 1 PO4 PO4 . E 3 PO4 B 1 2 2 PO4 PO4 . F 3 PO4 B 1 3 3 PO4 PO4 . G 4 HOH A 1 1 1 HOH HOH . G 4 HOH A 2 2 2 HOH HOH . G 4 HOH A 3 5 5 HOH HOH . G 4 HOH A 4 6 6 HOH HOH . G 4 HOH A 5 8 8 HOH HOH . G 4 HOH A 6 9 9 HOH HOH . G 4 HOH A 7 10 10 HOH HOH . G 4 HOH A 8 13 13 HOH HOH . G 4 HOH A 9 14 14 HOH HOH . G 4 HOH A 10 17 17 HOH HOH . G 4 HOH A 11 22 22 HOH HOH . G 4 HOH A 12 27 27 HOH HOH . G 4 HOH A 13 28 28 HOH HOH . G 4 HOH A 14 29 29 HOH HOH . G 4 HOH A 15 30 30 HOH HOH . G 4 HOH A 16 31 31 HOH HOH . G 4 HOH A 17 36 36 HOH HOH . G 4 HOH A 18 37 37 HOH HOH . G 4 HOH A 19 38 38 HOH HOH . G 4 HOH A 20 41 41 HOH HOH . G 4 HOH A 21 42 42 HOH HOH . G 4 HOH A 22 43 43 HOH HOH . G 4 HOH A 23 45 45 HOH HOH . G 4 HOH A 24 46 46 HOH HOH . G 4 HOH A 25 47 47 HOH HOH . G 4 HOH A 26 48 48 HOH HOH . G 4 HOH A 27 49 49 HOH HOH . G 4 HOH A 28 50 50 HOH HOH . G 4 HOH A 29 52 52 HOH HOH . G 4 HOH A 30 53 53 HOH HOH . G 4 HOH A 31 54 54 HOH HOH . G 4 HOH A 32 56 56 HOH HOH . G 4 HOH A 33 57 57 HOH HOH . G 4 HOH A 34 58 58 HOH HOH . G 4 HOH A 35 141 60 HOH HOH . G 4 HOH A 36 142 61 HOH HOH . G 4 HOH A 37 143 63 HOH HOH . G 4 HOH A 38 144 65 HOH HOH . G 4 HOH A 39 145 66 HOH HOH . G 4 HOH A 40 146 67 HOH HOH . G 4 HOH A 41 147 68 HOH HOH . G 4 HOH A 42 148 69 HOH HOH . G 4 HOH A 43 149 71 HOH HOH . G 4 HOH A 44 150 72 HOH HOH . G 4 HOH A 45 151 73 HOH HOH . G 4 HOH A 46 152 74 HOH HOH . G 4 HOH A 47 153 76 HOH HOH . G 4 HOH A 48 154 81 HOH HOH . G 4 HOH A 49 155 82 HOH HOH . G 4 HOH A 50 156 83 HOH HOH . G 4 HOH A 51 157 84 HOH HOH . G 4 HOH A 52 158 85 HOH HOH . G 4 HOH A 53 159 88 HOH HOH . G 4 HOH A 54 160 95 HOH HOH . G 4 HOH A 55 161 96 HOH HOH . G 4 HOH A 56 162 101 HOH HOH . G 4 HOH A 57 163 102 HOH HOH . G 4 HOH A 58 164 104 HOH HOH . G 4 HOH A 59 165 106 HOH HOH . G 4 HOH A 60 166 107 HOH HOH . G 4 HOH A 61 167 110 HOH HOH . G 4 HOH A 62 168 111 HOH HOH . G 4 HOH A 63 169 112 HOH HOH . G 4 HOH A 64 170 113 HOH HOH . G 4 HOH A 65 171 114 HOH HOH . G 4 HOH A 66 172 116 HOH HOH . G 4 HOH A 67 173 117 HOH HOH . G 4 HOH A 68 174 118 HOH HOH . G 4 HOH A 69 175 123 HOH HOH . G 4 HOH A 70 176 124 HOH HOH . G 4 HOH A 71 177 126 HOH HOH . G 4 HOH A 72 178 128 HOH HOH . G 4 HOH A 73 179 130 HOH HOH . G 4 HOH A 74 180 133 HOH HOH . G 4 HOH A 75 181 134 HOH HOH . G 4 HOH A 76 182 135 HOH HOH . H 4 HOH B 1 4 4 HOH HOH . H 4 HOH B 2 7 7 HOH HOH . H 4 HOH B 3 11 11 HOH HOH . H 4 HOH B 4 12 12 HOH HOH . H 4 HOH B 5 15 15 HOH HOH . H 4 HOH B 6 16 16 HOH HOH . H 4 HOH B 7 18 18 HOH HOH . H 4 HOH B 8 103 103 HOH HOH . H 4 HOH B 9 104 3 HOH HOH . H 4 HOH B 10 105 105 HOH HOH . H 4 HOH B 11 106 19 HOH HOH . H 4 HOH B 12 107 20 HOH HOH . H 4 HOH B 13 108 108 HOH HOH . H 4 HOH B 14 109 109 HOH HOH . H 4 HOH B 15 110 21 HOH HOH . H 4 HOH B 16 111 23 HOH HOH . H 4 HOH B 17 112 24 HOH HOH . H 4 HOH B 18 113 25 HOH HOH . H 4 HOH B 19 114 26 HOH HOH . H 4 HOH B 20 115 115 HOH HOH . H 4 HOH B 21 116 32 HOH HOH . H 4 HOH B 22 117 33 HOH HOH . H 4 HOH B 23 118 34 HOH HOH . H 4 HOH B 24 119 119 HOH HOH . H 4 HOH B 25 120 120 HOH HOH . H 4 HOH B 26 121 121 HOH HOH . H 4 HOH B 27 122 122 HOH HOH . H 4 HOH B 28 123 35 HOH HOH . H 4 HOH B 29 124 39 HOH HOH . H 4 HOH B 30 125 125 HOH HOH . H 4 HOH B 31 126 40 HOH HOH . H 4 HOH B 32 127 127 HOH HOH . H 4 HOH B 33 128 44 HOH HOH . H 4 HOH B 34 129 129 HOH HOH . H 4 HOH B 35 130 51 HOH HOH . H 4 HOH B 36 131 131 HOH HOH . H 4 HOH B 37 132 132 HOH HOH . H 4 HOH B 38 133 55 HOH HOH . H 4 HOH B 39 134 59 HOH HOH . H 4 HOH B 40 135 62 HOH HOH . H 4 HOH B 41 136 136 HOH HOH . H 4 HOH B 42 137 64 HOH HOH . H 4 HOH B 43 138 70 HOH HOH . H 4 HOH B 44 139 75 HOH HOH . H 4 HOH B 45 140 77 HOH HOH . H 4 HOH B 46 141 78 HOH HOH . H 4 HOH B 47 142 79 HOH HOH . H 4 HOH B 48 143 80 HOH HOH . H 4 HOH B 49 144 86 HOH HOH . H 4 HOH B 50 145 87 HOH HOH . H 4 HOH B 51 146 89 HOH HOH . H 4 HOH B 52 147 90 HOH HOH . H 4 HOH B 53 148 91 HOH HOH . H 4 HOH B 54 149 92 HOH HOH . H 4 HOH B 55 150 93 HOH HOH . H 4 HOH B 56 151 94 HOH HOH . H 4 HOH B 57 152 97 HOH HOH . H 4 HOH B 58 153 98 HOH HOH . H 4 HOH B 59 154 99 HOH HOH . H 4 HOH B 60 155 100 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . D 3 -30.538 23.036 14.907 1 65.52 ? P PO4 1 B 1 HETATM 2 O O1 PO4 . . . D 3 -30.433 24.505 14.565 1 65.44 ? O1 PO4 1 B 1 HETATM 3 O O2 PO4 . . . D 3 -31.97 22.768 15.271 1 67.1 ? O2 PO4 1 B 1 HETATM 4 O O3 PO4 . . . D 3 -30.16 22.146 13.749 1 64.3 ? O3 PO4 1 B 1 HETATM 5 O O4 PO4 . . . D 3 -29.659 22.717 16.085 1 65.71 ? O4 PO4 1 B 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 5 #