data_3NQO
#
_model_server_result.job_id            f4qgYULiCY4e-s1re7zH-g 
_model_server_result.datetime_utc      '2024-11-05 00:30:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3nqo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":203}' 
#
_entry.id    3NQO 
#
_exptl.entry_id    3NQO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3NQO 
_cell.length_a            69.739 
_cell.length_b            72.672 
_cell.length_c            76.072 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3NQO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C LEU 13 A LEU 12 1_555 A N MSE 14 A MSE 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale2 A C MSE 14 A MSE 13 1_555 A N ASN 15 A ASN 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? 
covale ? covale3 A C TYR 44 A TYR 43 1_555 A N MSE 45 A MSE 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale4 A C MSE 45 A MSE 44 1_555 A N THR 46 A THR 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? 
covale ? covale5 A C LYS 66 A LYS 65 1_555 A N MSE 67 A MSE 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale6 A C MSE 67 A MSE 66 1_555 A N GLY 68 A GLY 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale7 A C VAL 110 A VAL 109 1_555 A N MSE 111 A MSE 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
covale ? covale8 A C MSE 111 A MSE 110 1_555 A N VAL 112 A VAL 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
covale ? covale9 A C PHE 121 A PHE 120 1_555 A N MSE 122 A MSE 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale10 A C MSE 122 A MSE 121 1_555 A N ALA 123 A ALA 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale11 A C LYS 143 A LYS 142 1_555 A N MSE 144 A MSE 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale12 A C MSE 144 A MSE 143 1_555 A N TYR 145 A TYR 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale13 B C LEU 13 B LEU 12 1_555 B N MSE 14 B MSE 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale14 B C MSE 14 B MSE 13 1_555 B N ASN 15 B ASN 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
covale ? covale15 B C TYR 44 B TYR 43 1_555 B N MSE 45 B MSE 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? 
covale ? covale16 B C MSE 45 B MSE 44 1_555 B N THR 46 B THR 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale17 B C LYS 66 B LYS 65 1_555 B N MSE 67 B MSE 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale18 B C MSE 67 B MSE 66 1_555 B N GLY 68 B GLY 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale19 B C VAL 110 B VAL 109 1_555 B N MSE 111 B MSE 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale20 B C MSE 111 B MSE 110 1_555 B N VAL 112 B VAL 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
covale ? covale21 B C PHE 121 B PHE 120 1_555 B N MSE 122 B MSE 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
covale ? covale22 B C MSE 122 B MSE 121 1_555 B N ALA 123 B ALA 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? 
covale ? covale23 B C LYS 143 B LYS 142 1_555 B N MSE 144 B MSE 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? 
covale ? covale24 B C MSE 144 B MSE 143 1_555 B N TYR 145 B TYR 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
metalc ? metalc1 G O4 PG4 . A PG4 207 1_555 H NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.939 ? 
metalc ? metalc2 G O5 PG4 . A PG4 207 1_555 H NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.965 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     3NQO 
_atom_sites.fract_transf_matrix[1][1]    0.014339 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01376 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013145 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 202 202 GOL GOL . 
D 2 GOL A 1 203 203 GOL GOL . 
E 3 PG4 A 1 204 204 PG4 PG4 . 
F 3 PG4 A 1 206 206 PG4 PG4 . 
G 3 PG4 A 1 207 207 PG4 PG4 . 
H 4 NA B 1 201 201 NA NA . 
I 3 PG4 B 1 205 205 PG4 PG4 . 
J 3 PG4 B 1 208 208 PG4 PG4 . 
K 5 HOH A 1 209 209 HOH HOH . 
K 5 HOH A 2 210 210 HOH HOH . 
K 5 HOH A 3 212 212 HOH HOH . 
K 5 HOH A 4 214 214 HOH HOH . 
K 5 HOH A 5 218 218 HOH HOH . 
K 5 HOH A 6 219 219 HOH HOH . 
K 5 HOH A 7 220 220 HOH HOH . 
K 5 HOH A 8 224 224 HOH HOH . 
K 5 HOH A 9 225 225 HOH HOH . 
K 5 HOH A 10 227 227 HOH HOH . 
K 5 HOH A 11 228 228 HOH HOH . 
K 5 HOH A 12 229 229 HOH HOH . 
K 5 HOH A 13 230 230 HOH HOH . 
K 5 HOH A 14 233 233 HOH HOH . 
K 5 HOH A 15 234 234 HOH HOH . 
K 5 HOH A 16 235 235 HOH HOH . 
K 5 HOH A 17 237 237 HOH HOH . 
K 5 HOH A 18 238 238 HOH HOH . 
K 5 HOH A 19 240 240 HOH HOH . 
K 5 HOH A 20 243 243 HOH HOH . 
K 5 HOH A 21 245 245 HOH HOH . 
K 5 HOH A 22 246 246 HOH HOH . 
K 5 HOH A 23 247 247 HOH HOH . 
K 5 HOH A 24 248 248 HOH HOH . 
K 5 HOH A 25 249 249 HOH HOH . 
K 5 HOH A 26 251 251 HOH HOH . 
K 5 HOH A 27 252 252 HOH HOH . 
K 5 HOH A 28 257 257 HOH HOH . 
K 5 HOH A 29 260 260 HOH HOH . 
K 5 HOH A 30 261 261 HOH HOH . 
K 5 HOH A 31 268 268 HOH HOH . 
K 5 HOH A 32 269 269 HOH HOH . 
K 5 HOH A 33 271 271 HOH HOH . 
L 5 HOH B 1 211 211 HOH HOH . 
L 5 HOH B 2 213 213 HOH HOH . 
L 5 HOH B 3 215 215 HOH HOH . 
L 5 HOH B 4 216 216 HOH HOH . 
L 5 HOH B 5 217 217 HOH HOH . 
L 5 HOH B 6 221 221 HOH HOH . 
L 5 HOH B 7 222 222 HOH HOH . 
L 5 HOH B 8 223 223 HOH HOH . 
L 5 HOH B 9 226 226 HOH HOH . 
L 5 HOH B 10 231 231 HOH HOH . 
L 5 HOH B 11 232 232 HOH HOH . 
L 5 HOH B 12 236 236 HOH HOH . 
L 5 HOH B 13 239 239 HOH HOH . 
L 5 HOH B 14 241 241 HOH HOH . 
L 5 HOH B 15 242 242 HOH HOH . 
L 5 HOH B 16 244 244 HOH HOH . 
L 5 HOH B 17 250 250 HOH HOH . 
L 5 HOH B 18 253 253 HOH HOH . 
L 5 HOH B 19 254 254 HOH HOH . 
L 5 HOH B 20 255 255 HOH HOH . 
L 5 HOH B 21 256 256 HOH HOH . 
L 5 HOH B 22 258 258 HOH HOH . 
L 5 HOH B 23 259 259 HOH HOH . 
L 5 HOH B 24 262 262 HOH HOH . 
L 5 HOH B 25 263 263 HOH HOH . 
L 5 HOH B 26 264 264 HOH HOH . 
L 5 HOH B 27 265 265 HOH HOH . 
L 5 HOH B 28 266 266 HOH HOH . 
L 5 HOH B 29 267 267 HOH HOH . 
L 5 HOH B 30 270 270 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 2 71.83 13.981 55.63 1 71.2 ? C1 GOL 203 A 1 
HETATM 2 O O1 GOL . . . D 2 73.204 13.587 55.633 1 66.36 ? O1 GOL 203 A 1 
HETATM 3 C C2 GOL . . . D 2 71.341 14.868 54.459 1 72.27 ? C2 GOL 203 A 1 
HETATM 4 O O2 GOL . . . D 2 70.158 15.493 54.888 1 72.26 ? O2 GOL 203 A 1 
HETATM 5 C C3 GOL . . . D 2 72.319 15.946 53.972 1 74.07 ? C3 GOL 203 A 1 
HETATM 6 O O3 GOL . . . D 2 71.96 16.396 52.676 1 74.58 ? O3 GOL 203 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           360 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#