data_3NQV # _model_server_result.job_id 4-LXecDFNoBoAPxv2OawAQ _model_server_result.datetime_utc '2024-12-02 07:23:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nqv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 3NQV # _exptl.entry_id 3NQV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 120.152 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BENZAMIDINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.69 _cell.angle_gamma 90 _cell.entry_id 3NQV _cell.length_a 90.524 _cell.length_b 64.725 _cell.length_c 49.032 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NQV _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C7 H8 N2' _chem_comp.formula_weight 120.152 _chem_comp.id BEN _chem_comp.mon_nstd_flag . _chem_comp.name BENZAMIDINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BEN doub 70 n y C1 C6 BEN sing 71 n y C1 C BEN sing 72 n n C2 C3 BEN sing 73 n y C2 H2 BEN sing 74 n n C3 C4 BEN doub 75 n y C3 H3 BEN sing 76 n n C4 C5 BEN sing 77 n y C4 H4 BEN sing 78 n n C5 C6 BEN doub 79 n y C5 H5 BEN sing 80 n n C6 H6 BEN sing 81 n n C N1 BEN doub 82 e n C N2 BEN sing 83 n n N1 HN1 BEN sing 84 n n N2 HN21 BEN sing 85 n n N2 HN22 BEN sing 86 n n # _atom_sites.entry_id 3NQV _atom_sites.fract_transf_matrix[1][1] 0.011047 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002896 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01545 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021084 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BEN A 1 301 301 BEN BDN . C 3 HOH A 1 272 1 HOH HOH . C 3 HOH A 2 273 2 HOH HOH . C 3 HOH A 3 274 3 HOH HOH . C 3 HOH A 4 275 4 HOH HOH . C 3 HOH A 5 276 5 HOH HOH . C 3 HOH A 6 277 6 HOH HOH . C 3 HOH A 7 278 7 HOH HOH . C 3 HOH A 8 279 8 HOH HOH . C 3 HOH A 9 280 9 HOH HOH . C 3 HOH A 10 281 10 HOH HOH . C 3 HOH A 11 282 11 HOH HOH . C 3 HOH A 12 283 12 HOH HOH . C 3 HOH A 13 284 13 HOH HOH . C 3 HOH A 14 285 14 HOH HOH . C 3 HOH A 15 286 15 HOH HOH . C 3 HOH A 16 287 16 HOH HOH . C 3 HOH A 17 288 17 HOH HOH . C 3 HOH A 18 289 18 HOH HOH . C 3 HOH A 19 290 19 HOH HOH . C 3 HOH A 20 291 20 HOH HOH . C 3 HOH A 21 292 21 HOH HOH . C 3 HOH A 22 293 22 HOH HOH . C 3 HOH A 23 294 23 HOH HOH . C 3 HOH A 24 295 24 HOH HOH . C 3 HOH A 25 296 25 HOH HOH . C 3 HOH A 26 297 26 HOH HOH . C 3 HOH A 27 298 27 HOH HOH . C 3 HOH A 28 299 28 HOH HOH . C 3 HOH A 29 300 29 HOH HOH . C 3 HOH A 30 302 30 HOH HOH . C 3 HOH A 31 303 31 HOH HOH . C 3 HOH A 32 304 32 HOH HOH . C 3 HOH A 33 305 33 HOH HOH . C 3 HOH A 34 306 34 HOH HOH . C 3 HOH A 35 307 35 HOH HOH . C 3 HOH A 36 308 36 HOH HOH . C 3 HOH A 37 309 37 HOH HOH . C 3 HOH A 38 310 38 HOH HOH . C 3 HOH A 39 311 39 HOH HOH . C 3 HOH A 40 312 40 HOH HOH . C 3 HOH A 41 313 41 HOH HOH . C 3 HOH A 42 314 42 HOH HOH . C 3 HOH A 43 315 43 HOH HOH . C 3 HOH A 44 316 44 HOH HOH . C 3 HOH A 45 317 45 HOH HOH . C 3 HOH A 46 318 46 HOH HOH . C 3 HOH A 47 319 47 HOH HOH . C 3 HOH A 48 320 48 HOH HOH . C 3 HOH A 49 321 49 HOH HOH . C 3 HOH A 50 322 50 HOH HOH . C 3 HOH A 51 323 51 HOH HOH . C 3 HOH A 52 324 52 HOH HOH . C 3 HOH A 53 325 53 HOH HOH . C 3 HOH A 54 326 54 HOH HOH . C 3 HOH A 55 327 55 HOH HOH . C 3 HOH A 56 328 56 HOH HOH . C 3 HOH A 57 329 57 HOH HOH . C 3 HOH A 58 330 58 HOH HOH . C 3 HOH A 59 331 59 HOH HOH . C 3 HOH A 60 332 60 HOH HOH . C 3 HOH A 61 333 61 HOH HOH . C 3 HOH A 62 334 62 HOH HOH . C 3 HOH A 63 335 63 HOH HOH . C 3 HOH A 64 336 64 HOH HOH . C 3 HOH A 65 337 65 HOH HOH . C 3 HOH A 66 338 66 HOH HOH . C 3 HOH A 67 339 67 HOH HOH . C 3 HOH A 68 340 68 HOH HOH . C 3 HOH A 69 341 69 HOH HOH . C 3 HOH A 70 342 70 HOH HOH . C 3 HOH A 71 343 71 HOH HOH . C 3 HOH A 72 344 72 HOH HOH . C 3 HOH A 73 345 73 HOH HOH . C 3 HOH A 74 346 74 HOH HOH . C 3 HOH A 75 347 75 HOH HOH . C 3 HOH A 76 348 76 HOH HOH . C 3 HOH A 77 349 77 HOH HOH . C 3 HOH A 78 350 78 HOH HOH . C 3 HOH A 79 351 79 HOH HOH . C 3 HOH A 80 352 80 HOH HOH . C 3 HOH A 81 353 81 HOH HOH . C 3 HOH A 82 354 82 HOH HOH . C 3 HOH A 83 355 83 HOH HOH . C 3 HOH A 84 356 84 HOH HOH . C 3 HOH A 85 357 85 HOH HOH . C 3 HOH A 86 358 86 HOH HOH . C 3 HOH A 87 359 87 HOH HOH . C 3 HOH A 88 360 88 HOH HOH . C 3 HOH A 89 361 89 HOH HOH . C 3 HOH A 90 362 90 HOH HOH . C 3 HOH A 91 363 91 HOH HOH . C 3 HOH A 92 364 92 HOH HOH . C 3 HOH A 93 365 93 HOH HOH . C 3 HOH A 94 366 94 HOH HOH . C 3 HOH A 95 367 95 HOH HOH . C 3 HOH A 96 368 96 HOH HOH . C 3 HOH A 97 369 97 HOH HOH . C 3 HOH A 98 370 98 HOH HOH . C 3 HOH A 99 371 99 HOH HOH . C 3 HOH A 100 372 100 HOH HOH . C 3 HOH A 101 373 101 HOH HOH . C 3 HOH A 102 374 102 HOH HOH . C 3 HOH A 103 375 103 HOH HOH . C 3 HOH A 104 376 104 HOH HOH . C 3 HOH A 105 377 105 HOH HOH . C 3 HOH A 106 378 106 HOH HOH . C 3 HOH A 107 379 107 HOH HOH . C 3 HOH A 108 380 108 HOH HOH . C 3 HOH A 109 381 109 HOH HOH . C 3 HOH A 110 382 110 HOH HOH . C 3 HOH A 111 383 111 HOH HOH . C 3 HOH A 112 384 112 HOH HOH . C 3 HOH A 113 385 113 HOH HOH . C 3 HOH A 114 386 114 HOH HOH . C 3 HOH A 115 387 115 HOH HOH . C 3 HOH A 116 388 116 HOH HOH . C 3 HOH A 117 389 117 HOH HOH . C 3 HOH A 118 390 118 HOH HOH . C 3 HOH A 119 391 119 HOH HOH . C 3 HOH A 120 392 120 HOH HOH . C 3 HOH A 121 393 121 HOH HOH . C 3 HOH A 122 394 122 HOH HOH . C 3 HOH A 123 395 123 HOH HOH . C 3 HOH A 124 396 124 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BEN . . . B 2 23.528 -12.179 16.084 1 43.06 ? C1 BEN 301 A 1 HETATM 2 C C2 BEN . . . B 2 23.643 -12.666 14.794 1 42.41 ? C2 BEN 301 A 1 HETATM 3 C C3 BEN . . . B 2 23.58 -14.041 14.56 1 38 ? C3 BEN 301 A 1 HETATM 4 C C4 BEN . . . B 2 23.389 -14.9 15.626 1 46.03 ? C4 BEN 301 A 1 HETATM 5 C C5 BEN . . . B 2 23.28 -14.405 16.928 1 39.43 ? C5 BEN 301 A 1 HETATM 6 C C6 BEN . . . B 2 23.349 -13.041 17.164 1 43.18 ? C6 BEN 301 A 1 HETATM 7 C C BEN . . . B 2 23.629 -10.701 16.283 1 42.25 ? C BEN 301 A 1 HETATM 8 N N1 BEN . . . B 2 24.207 -10.025 15.394 1 43.55 ? N1 BEN 301 A 1 HETATM 9 N N2 BEN . . . B 2 23.141 -10.108 17.364 1 42.65 ? N2 BEN 301 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 9 #