data_3NR9 # _model_server_result.job_id s0Su_Ri2K0PTACiezojwrQ _model_server_result.datetime_utc '2024-12-03 19:19:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nr9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1}' # _entry.id 3NR9 # _exptl.entry_id 3NR9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.445 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (5Z)-5-(quinolin-6-ylmethylidene)-2-[(thiophen-2-ylmethyl)amino]-1,3-thiazol-4(5H)-one _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3NR9 _cell.length_a 97.678 _cell.length_b 97.678 _cell.length_c 223.029 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NR9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,G 1 1,2 B,E,H 2 1 C,F,I 2 3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_645 y+1,x-1,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 146.517 -84.591629 0 3 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 0 74.343 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C18 H13 N3 O S2' _chem_comp.formula_weight 351.445 _chem_comp.id NR9 _chem_comp.mon_nstd_flag . _chem_comp.name (5Z)-5-(quinolin-6-ylmethylidene)-2-[(thiophen-2-ylmethyl)amino]-1,3-thiazol-4(5H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CAD NR9 doub 237 n y CAA CAB NR9 sing 238 n y CAA HAA NR9 sing 239 n n CAK CAB NR9 sing 240 n n CAB CAC NR9 doub 241 n y CAC CAF NR9 sing 242 n y CAC HAC NR9 sing 243 n n CAD CAE NR9 sing 244 n y CAD HAD NR9 sing 245 n n CAE NAG NR9 doub 246 n y CAE CAF NR9 sing 247 n y CAF CAI NR9 doub 248 n y NAG CAH NR9 sing 249 n y CAH CAJ NR9 doub 250 n y CAH HAH NR9 sing 251 n n CAI CAJ NR9 sing 252 n y CAI HAI NR9 sing 253 n n CAJ HAJ NR9 sing 254 n n CAL CAK NR9 doub 255 n n CAK HAK NR9 sing 256 z n CAM CAL NR9 sing 257 n n CAL SAP NR9 sing 258 n n NAN CAM NR9 sing 259 n n OAQ CAM NR9 doub 260 n n NAN CAO NR9 doub 261 n n NAR CAO NR9 sing 262 n n CAO SAP NR9 sing 263 n n CAS NAR NR9 sing 264 n n NAR HNAR NR9 sing 265 n n CAS CAT NR9 sing 266 n n CAS HAS NR9 sing 267 n n CAS HASA NR9 sing 268 n n CAX CAT NR9 doub 269 n y CAT SAU NR9 sing 270 n y SAU CAV NR9 sing 271 n y CAW CAV NR9 doub 272 n y CAV HAV NR9 sing 273 n n CAX CAW NR9 sing 274 n y CAW HAW NR9 sing 275 n n CAX HAX NR9 sing 276 n n # _atom_sites.entry_id 3NR9 _atom_sites.fract_transf_matrix[1][1] 0.010238 _atom_sites.fract_transf_matrix[1][2] 0.005911 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011822 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004484 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 NR9 A 1 1 1 NR9 NR9 . E 2 NR9 B 1 1 1 NR9 NR9 . F 2 NR9 C 1 1 1 NR9 NR9 . G 3 HOH A 1 3 3 HOH HOH . G 3 HOH A 2 5 5 HOH HOH . G 3 HOH A 3 9 9 HOH HOH . G 3 HOH A 4 14 14 HOH HOH . G 3 HOH A 5 15 15 HOH HOH . G 3 HOH A 6 24 24 HOH HOH . G 3 HOH A 7 26 26 HOH HOH . G 3 HOH A 8 32 32 HOH HOH . G 3 HOH A 9 33 33 HOH HOH . G 3 HOH A 10 47 47 HOH HOH . G 3 HOH A 11 48 48 HOH HOH . G 3 HOH A 12 49 49 HOH HOH . G 3 HOH A 13 51 51 HOH HOH . G 3 HOH A 14 52 52 HOH HOH . G 3 HOH A 15 58 58 HOH HOH . G 3 HOH A 16 59 59 HOH HOH . G 3 HOH A 17 61 61 HOH HOH . G 3 HOH A 18 64 64 HOH HOH . G 3 HOH A 19 65 65 HOH HOH . G 3 HOH A 20 66 66 HOH HOH . G 3 HOH A 21 69 69 HOH HOH . G 3 HOH A 22 70 70 HOH HOH . G 3 HOH A 23 71 71 HOH HOH . G 3 HOH A 24 72 72 HOH HOH . G 3 HOH A 25 75 75 HOH HOH . G 3 HOH A 26 76 76 HOH HOH . G 3 HOH A 27 79 79 HOH HOH . G 3 HOH A 28 80 80 HOH HOH . H 3 HOH B 1 6 6 HOH HOH . H 3 HOH B 2 7 7 HOH HOH . H 3 HOH B 3 8 8 HOH HOH . H 3 HOH B 4 11 11 HOH HOH . H 3 HOH B 5 13 13 HOH HOH . H 3 HOH B 6 16 16 HOH HOH . H 3 HOH B 7 18 18 HOH HOH . H 3 HOH B 8 20 20 HOH HOH . H 3 HOH B 9 31 31 HOH HOH . H 3 HOH B 10 34 34 HOH HOH . H 3 HOH B 11 35 35 HOH HOH . H 3 HOH B 12 36 36 HOH HOH . H 3 HOH B 13 41 41 HOH HOH . H 3 HOH B 14 46 46 HOH HOH . H 3 HOH B 15 53 53 HOH HOH . H 3 HOH B 16 68 68 HOH HOH . H 3 HOH B 17 78 78 HOH HOH . I 3 HOH C 1 10 10 HOH HOH . I 3 HOH C 2 21 21 HOH HOH . I 3 HOH C 3 23 23 HOH HOH . I 3 HOH C 4 25 25 HOH HOH . I 3 HOH C 5 27 27 HOH HOH . I 3 HOH C 6 28 28 HOH HOH . I 3 HOH C 7 39 39 HOH HOH . I 3 HOH C 8 40 40 HOH HOH . I 3 HOH C 9 44 44 HOH HOH . I 3 HOH C 10 45 45 HOH HOH . I 3 HOH C 11 54 54 HOH HOH . I 3 HOH C 12 55 55 HOH HOH . I 3 HOH C 13 56 56 HOH HOH . I 3 HOH C 14 57 57 HOH HOH . I 3 HOH C 15 63 63 HOH HOH . I 3 HOH C 16 67 67 HOH HOH . I 3 HOH C 17 73 73 HOH HOH . I 3 HOH C 18 77 77 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA NR9 . . . E 2 30.193 18.361 18.347 1 45.82 ? CAA NR9 1 B 1 HETATM 2 C CAB NR9 . . . E 2 31.538 18.707 18.553 1 41.18 ? CAB NR9 1 B 1 HETATM 3 C CAC NR9 . . . E 2 32.437 17.686 18.887 1 37.98 ? CAC NR9 1 B 1 HETATM 4 C CAD NR9 . . . E 2 29.736 17.04 18.449 1 45.43 ? CAD NR9 1 B 1 HETATM 5 C CAE NR9 . . . E 2 30.642 16.023 18.769 1 46.07 ? CAE NR9 1 B 1 HETATM 6 C CAF NR9 . . . E 2 31.991 16.359 18.983 1 41.6 ? CAF NR9 1 B 1 HETATM 7 N NAG NR9 . . . E 2 30.216 14.731 18.862 1 46.86 ? NAG NR9 1 B 1 HETATM 8 C CAH NR9 . . . E 2 31.051 13.74 19.171 1 44.31 ? CAH NR9 1 B 1 HETATM 9 C CAI NR9 . . . E 2 32.877 15.325 19.305 1 46.23 ? CAI NR9 1 B 1 HETATM 10 C CAJ NR9 . . . E 2 32.402 14.012 19.406 1 45.4 ? CAJ NR9 1 B 1 HETATM 11 C CAK NR9 . . . E 2 31.864 20.073 18.435 1 40.21 ? CAK NR9 1 B 1 HETATM 12 C CAL NR9 . . . E 2 33.103 20.692 18.19 1 42.12 ? CAL NR9 1 B 1 HETATM 13 C CAM NR9 . . . E 2 33.288 22.082 17.989 1 44.8 ? CAM NR9 1 B 1 HETATM 14 N NAN NR9 . . . E 2 34.573 22.484 17.78 1 46.57 ? NAN NR9 1 B 1 HETATM 15 C CAO NR9 . . . E 2 35.46 21.458 17.792 1 53.83 ? CAO NR9 1 B 1 HETATM 16 S SAP NR9 . . . E 2 34.639 19.96 18.087 1 41.87 ? SAP NR9 1 B 1 HETATM 17 O OAQ NR9 . . . E 2 32.355 22.896 18.002 1 43.58 ? OAQ NR9 1 B 1 HETATM 18 N NAR NR9 . . . E 2 36.792 21.575 17.588 1 58.14 ? NAR NR9 1 B 1 HETATM 19 C CAS NR9 . . . E 2 37.562 20.496 16.919 1 59.1 ? CAS NR9 1 B 1 HETATM 20 C CAT NR9 . . . E 2 38.619 19.869 17.856 1 68.41 ? CAT NR9 1 B 1 HETATM 21 S SAU NR9 . . . E 2 38.233 18.957 19.241 1 64.79 ? SAU NR9 1 B 1 HETATM 22 C CAV NR9 . . . E 2 39.85 18.657 19.663 1 68.48 ? CAV NR9 1 B 1 HETATM 23 C CAW NR9 . . . E 2 40.634 19.254 18.741 1 67.7 ? CAW NR9 1 B 1 HETATM 24 C CAX NR9 . . . E 2 39.968 19.91 17.766 1 69.35 ? CAX NR9 1 B 1 # _model_server_stats.io_time_ms 143 _model_server_stats.parse_time_ms 41 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 677 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 24 #