data_3NS7 # _model_server_result.job_id vav4V08MQciZ3oGuw_qbNw _model_server_result.datetime_utc '2025-07-03 18:58:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ns7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1}' # _entry.id 3NS7 # _exptl.entry_id 3NS7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 418.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(3S)-4-hydroxy-3-{[(2S)-4-{[2-(2-methyl-1H-benzimidazol-1-yl)ethyl]amino}-2-(1-methylethyl)-4-oxobutanoyl]amino}butanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3NS7 _cell.length_a 63.95 _cell.length_b 63.95 _cell.length_c 158.55 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NS7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,B,C,D,E 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 63.95 63.95 79.275 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 150 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 285 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id C13 _struct_conn.ptnr2_label_comp_id 3NS _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id 3NS _struct_conn.ptnr2_auth_seq_id 1 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.795 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H30 N4 O5' _chem_comp.formula_weight 418.487 _chem_comp.id 3NS _chem_comp.mon_nstd_flag . _chem_comp.name '(3S)-4-hydroxy-3-{[(2S)-4-{[2-(2-methyl-1H-benzimidazol-1-yl)ethyl]amino}-2-(1-methylethyl)-4-oxobutanoyl]amino}butanoic acid' _chem_comp.type peptide-like _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C1 3NS sing 1 n n C1 N4 3NS sing 2 n n C1 H1 3NS sing 3 n n C1 H1A 3NS sing 4 n n N1 C2 3NS sing 5 n n C2 H2 3NS sing 6 n n C2 H2A 3NS sing 7 n n C3 N1 3NS sing 8 n n N1 HN1 3NS sing 9 n n O1 C3 3NS doub 10 n n C4 C3 3NS sing 11 n n C5 C4 3NS sing 12 n n C4 H4 3NS sing 13 n n C4 H4A 3NS sing 14 n n C7 C5 3NS sing 15 n n C5 C6 3NS sing 16 n n C5 H5 3NS sing 17 n n C6 C8 3NS sing 18 n n C6 C9 3NS sing 19 n n C6 H6 3NS sing 20 n n O2 C7 3NS doub 21 n n N2 C7 3NS sing 22 n n C8 H8 3NS sing 23 n n C8 H8A 3NS sing 24 n n C8 H8B 3NS sing 25 n n C9 H9 3NS sing 26 n n C9 H9A 3NS sing 27 n n C9 H9B 3NS sing 28 n n C10 N2 3NS sing 29 n n N2 HN2 3NS sing 30 n n C11 C10 3NS sing 31 n n C13 C10 3NS sing 32 n n C10 H10 3NS sing 33 n n C12 C11 3NS sing 34 n n C11 H11 3NS sing 35 n n C11 H11A 3NS sing 36 n n O4 C12 3NS doub 37 n n O3 C12 3NS sing 38 n n O3 HO3 3NS sing 39 n n O5 C13 3NS sing 40 n n C13 H13 3NS sing 41 n n C13 H13A 3NS sing 42 n n O5 HO5 3NS sing 43 n n C19 C14 3NS doub 44 n y C15 C14 3NS sing 45 n y C14 N3 3NS sing 46 n y C16 C15 3NS doub 47 n y C15 H15 3NS sing 48 n n C17 C16 3NS sing 49 n y C16 H16 3NS sing 50 n n C17 C18 3NS doub 51 n y C17 H17 3NS sing 52 n n C18 C19 3NS sing 53 n y C18 H18 3NS sing 54 n n C19 N4 3NS sing 55 n y C20 N3 3NS doub 56 n y N4 C20 3NS sing 57 n y C20 C21 3NS sing 58 n n C21 H21 3NS sing 59 n n C21 H21A 3NS sing 60 n n C21 H21B 3NS sing 61 n n # _atom_sites.entry_id 3NS7 _atom_sites.fract_transf_matrix[1][1] 0.015637 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015637 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006307 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 3NS B 1 1 1 3NS 3NS . D 4 HOH A 1 1 1 HOH HOH . D 4 HOH A 2 2 2 HOH HOH . D 4 HOH A 3 5 5 HOH HOH . D 4 HOH A 4 6 6 HOH HOH . D 4 HOH A 5 7 7 HOH HOH . D 4 HOH A 6 8 8 HOH HOH . D 4 HOH A 7 9 9 HOH HOH . D 4 HOH A 8 10 10 HOH HOH . D 4 HOH A 9 11 11 HOH HOH . D 4 HOH A 10 12 12 HOH HOH . D 4 HOH A 11 13 13 HOH HOH . D 4 HOH A 12 14 14 HOH HOH . D 4 HOH A 13 16 16 HOH HOH . D 4 HOH A 14 17 17 HOH HOH . D 4 HOH A 15 18 18 HOH HOH . D 4 HOH A 16 22 22 HOH HOH . D 4 HOH A 17 23 23 HOH HOH . D 4 HOH A 18 24 24 HOH HOH . D 4 HOH A 19 25 25 HOH HOH . D 4 HOH A 20 27 27 HOH HOH . D 4 HOH A 21 30 30 HOH HOH . D 4 HOH A 22 31 31 HOH HOH . D 4 HOH A 23 33 33 HOH HOH . D 4 HOH A 24 34 34 HOH HOH . D 4 HOH A 25 36 36 HOH HOH . D 4 HOH A 26 37 37 HOH HOH . D 4 HOH A 27 38 38 HOH HOH . D 4 HOH A 28 39 39 HOH HOH . D 4 HOH A 29 41 41 HOH HOH . D 4 HOH A 30 44 44 HOH HOH . D 4 HOH A 31 45 45 HOH HOH . D 4 HOH A 32 47 47 HOH HOH . E 4 HOH B 1 3 3 HOH HOH . E 4 HOH B 2 4 4 HOH HOH . E 4 HOH B 3 15 15 HOH HOH . E 4 HOH B 4 19 19 HOH HOH . E 4 HOH B 5 20 20 HOH HOH . E 4 HOH B 6 21 21 HOH HOH . E 4 HOH B 7 26 26 HOH HOH . E 4 HOH B 8 28 28 HOH HOH . E 4 HOH B 9 29 29 HOH HOH . E 4 HOH B 10 32 32 HOH HOH . E 4 HOH B 11 35 35 HOH HOH . E 4 HOH B 12 40 40 HOH HOH . E 4 HOH B 13 42 42 HOH HOH . E 4 HOH B 14 43 43 HOH HOH . E 4 HOH B 15 46 46 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 3NS . . . C 3 28.311 1.193 51.027 1 25.54 ? C1 3NS 1 B 1 HETATM 2 C C2 3NS . . . C 3 28.702 1.426 49.564 1 20 ? C2 3NS 1 B 1 HETATM 3 N N1 3NS . . . C 3 29.998 0.83 49.302 1 20 ? N1 3NS 1 B 1 HETATM 4 C C14 3NS . . . C 3 25.398 3.375 51.654 1 20 ? C14 3NS 1 B 1 HETATM 5 C C15 3NS . . . C 3 24.856 4.629 51.604 1 20 ? C15 3NS 1 B 1 HETATM 6 C C16 3NS . . . C 3 25.628 5.713 51.194 1 20 ? C16 3NS 1 B 1 HETATM 7 C C17 3NS . . . C 3 26.952 5.518 50.81 1 20 ? C17 3NS 1 B 1 HETATM 8 C C18 3NS . . . C 3 27.502 4.241 50.862 1 20 ? C18 3NS 1 B 1 HETATM 9 C C19 3NS . . . C 3 26.745 3.167 51.249 1 20 ? C19 3NS 1 B 1 HETATM 10 N N3 3NS . . . C 3 24.876 2.138 51.973 1 20 ? N3 3NS 1 B 1 HETATM 11 N N4 3NS . . . C 3 27.01 1.808 51.368 1 20 ? N4 3NS 1 B 1 HETATM 12 C C20 3NS . . . C 3 25.86 1.247 51.783 1 20 ? C20 3NS 1 B 1 HETATM 13 C C21 3NS . . . C 3 25.649 -0.246 51.947 1 20 ? C21 3NS 1 B 1 HETATM 14 C C3 3NS . . . C 3 30.887 1.424 48.488 1 15.54 ? C3 3NS 1 B 1 HETATM 15 O O1 3NS . . . C 3 30.787 2.561 48.043 1 29.53 ? O1 3NS 1 B 1 HETATM 16 C C4 3NS . . . C 3 32.122 0.557 48.258 1 20 ? C4 3NS 1 B 1 HETATM 17 C C5 3NS . . . C 3 33.307 1.437 47.818 1 18.27 ? C5 3NS 1 B 1 HETATM 18 C C6 3NS . . . C 3 34.632 1.033 48.511 1 22.11 ? C6 3NS 1 B 1 HETATM 19 C C7 3NS . . . C 3 33.376 1.501 46.282 1 18.27 ? C7 3NS 1 B 1 HETATM 20 O O2 3NS . . . C 3 32.701 0.76 45.564 1 22.11 ? O2 3NS 1 B 1 HETATM 21 C C8 3NS . . . C 3 34.894 -0.486 48.562 1 20 ? C8 3NS 1 B 1 HETATM 22 C C9 3NS . . . C 3 34.706 1.66 49.917 1 20 ? C9 3NS 1 B 1 HETATM 23 C C13 3NS . . . C 3 35.864 3.158 44.187 1 20 ? C13 3NS 1 B 1 HETATM 24 N N2 3NS . . . C 3 34.206 2.455 45.827 1 28.44 ? N2 3NS 1 B 1 HETATM 25 O O5 3NS . . . C 3 36.728 2.033 44.173 1 20 ? O5 3NS 1 B 1 HETATM 26 C C10 3NS . . . C 3 34.405 2.748 44.409 1 28.44 ? C10 3NS 1 B 1 HETATM 27 C C11 3NS . . . C 3 33.452 3.888 44.014 1 19.39 ? C11 3NS 1 B 1 HETATM 28 C C12 3NS . . . C 3 33.147 3.908 42.516 1 19.39 ? C12 3NS 1 B 1 HETATM 29 O O3 3NS . . . C 3 32.367 3.122 42.039 1 19.39 ? O3 3NS 1 B 1 HETATM 30 O O4 3NS . . . C 3 33.586 4.857 41.876 1 19.39 ? O4 3NS 1 B 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 30 #