data_3NS9 # _model_server_result.job_id PegjrPVBQ_5rTx2MqOqoog _model_server_result.datetime_utc '2024-11-23 12:28:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ns9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":0}' # _entry.id 3NS9 # _exptl.entry_id 3NS9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 385.46 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S,3S)-3-{[7-(benzylamino)-3-(1-methylethyl)pyrazolo[1,5-a]pyrimidin-5-yl]amino}butane-1,2,4-triol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3NS9 _cell.length_a 53.05 _cell.length_b 70.69 _cell.length_c 72.11 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NS9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H27 N5 O3' _chem_comp.formula_weight 385.46 _chem_comp.id NS9 _chem_comp.mon_nstd_flag . _chem_comp.name (2S,3S)-3-{[7-(benzylamino)-3-(1-methylethyl)pyrazolo[1,5-a]pyrimidin-5-yl]amino}butane-1,2,4-triol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C9 NS9 doub 237 n y N1 N2 NS9 sing 238 n y N2 C3 NS9 sing 239 n y N2 C7 NS9 sing 240 n y N10 C3 NS9 sing 241 n n C3 C4 NS9 doub 242 n y C4 C5 NS9 sing 243 n y C4 H4 NS9 sing 244 n n N6 C5 NS9 doub 245 n y C5 N18 NS9 sing 246 n n C7 N6 NS9 sing 247 n y C8 C7 NS9 doub 248 n y C9 C8 NS9 sing 249 n y C8 C26 NS9 sing 250 n n C9 H9 NS9 sing 251 n n N10 C11 NS9 sing 252 n n N10 HN10 NS9 sing 253 n n C12 C11 NS9 sing 254 n n C11 H11 NS9 sing 255 n n C11 H11A NS9 sing 256 n n C13 C12 NS9 doub 257 n y C12 C17 NS9 sing 258 n y C14 C13 NS9 sing 259 n y C13 H13 NS9 sing 260 n n C14 C15 NS9 doub 261 n y C14 H14 NS9 sing 262 n n C15 C16 NS9 sing 263 n y C15 H15 NS9 sing 264 n n C16 C17 NS9 doub 265 n y C16 H16 NS9 sing 266 n n C17 H17 NS9 sing 267 n n N18 C19 NS9 sing 268 n n N18 HN18 NS9 sing 269 n n C23 C19 NS9 sing 270 n n C19 C20 NS9 sing 271 n n C19 H19 NS9 sing 272 n n C20 O25 NS9 sing 273 n n C20 C21 NS9 sing 274 n n C20 H20 NS9 sing 275 n n O22 C21 NS9 sing 276 n n C21 H21 NS9 sing 277 n n C21 H21A NS9 sing 278 n n O22 HO22 NS9 sing 279 n n C23 O24 NS9 sing 280 n n C23 H23 NS9 sing 281 n n C23 H23A NS9 sing 282 n n O24 HO24 NS9 sing 283 n n O25 HO25 NS9 sing 284 n n C28 C26 NS9 sing 285 n n C26 C27 NS9 sing 286 n n C26 H26 NS9 sing 287 n n C27 H27 NS9 sing 288 n n C27 H27A NS9 sing 289 n n C27 H27B NS9 sing 290 n n C28 H28 NS9 sing 291 n n C28 H28A NS9 sing 292 n n C28 H28B NS9 sing 293 n n # _atom_sites.entry_id 3NS9 _atom_sites.fract_transf_matrix[1][1] 0.01885 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014146 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013868 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NS9 A 1 0 0 NS9 NS9 . C 3 HOH A 1 299 1 HOH HOH . C 3 HOH A 2 300 2 HOH HOH . C 3 HOH A 3 301 3 HOH HOH . C 3 HOH A 4 302 4 HOH HOH . C 3 HOH A 5 303 5 HOH HOH . C 3 HOH A 6 304 6 HOH HOH . C 3 HOH A 7 305 7 HOH HOH . C 3 HOH A 8 306 8 HOH HOH . C 3 HOH A 9 307 9 HOH HOH . C 3 HOH A 10 308 10 HOH HOH . C 3 HOH A 11 309 11 HOH HOH . C 3 HOH A 12 310 12 HOH HOH . C 3 HOH A 13 311 13 HOH HOH . C 3 HOH A 14 312 14 HOH HOH . C 3 HOH A 15 313 15 HOH HOH . C 3 HOH A 16 314 16 HOH HOH . C 3 HOH A 17 315 17 HOH HOH . C 3 HOH A 18 316 18 HOH HOH . C 3 HOH A 19 317 19 HOH HOH . C 3 HOH A 20 318 20 HOH HOH . C 3 HOH A 21 319 21 HOH HOH . C 3 HOH A 22 320 22 HOH HOH . C 3 HOH A 23 321 23 HOH HOH . C 3 HOH A 24 322 24 HOH HOH . C 3 HOH A 25 323 25 HOH HOH . C 3 HOH A 26 324 26 HOH HOH . C 3 HOH A 27 325 27 HOH HOH . C 3 HOH A 28 326 28 HOH HOH . C 3 HOH A 29 327 29 HOH HOH . C 3 HOH A 30 328 30 HOH HOH . C 3 HOH A 31 329 32 HOH HOH . C 3 HOH A 32 330 33 HOH HOH . C 3 HOH A 33 331 35 HOH HOH . C 3 HOH A 34 332 36 HOH HOH . C 3 HOH A 35 333 37 HOH HOH . C 3 HOH A 36 334 38 HOH HOH . C 3 HOH A 37 335 39 HOH HOH . C 3 HOH A 38 336 40 HOH HOH . C 3 HOH A 39 337 41 HOH HOH . C 3 HOH A 40 338 42 HOH HOH . C 3 HOH A 41 339 43 HOH HOH . C 3 HOH A 42 340 44 HOH HOH . C 3 HOH A 43 341 45 HOH HOH . C 3 HOH A 44 342 47 HOH HOH . C 3 HOH A 45 343 48 HOH HOH . C 3 HOH A 46 344 49 HOH HOH . C 3 HOH A 47 345 50 HOH HOH . C 3 HOH A 48 346 51 HOH HOH . C 3 HOH A 49 347 52 HOH HOH . C 3 HOH A 50 348 53 HOH HOH . C 3 HOH A 51 349 54 HOH HOH . C 3 HOH A 52 350 55 HOH HOH . C 3 HOH A 53 351 56 HOH HOH . C 3 HOH A 54 352 57 HOH HOH . C 3 HOH A 55 353 58 HOH HOH . C 3 HOH A 56 354 59 HOH HOH . C 3 HOH A 57 355 60 HOH HOH . C 3 HOH A 58 356 61 HOH HOH . C 3 HOH A 59 357 62 HOH HOH . C 3 HOH A 60 358 63 HOH HOH . C 3 HOH A 61 359 64 HOH HOH . C 3 HOH A 62 360 65 HOH HOH . C 3 HOH A 63 361 66 HOH HOH . C 3 HOH A 64 362 67 HOH HOH . C 3 HOH A 65 363 68 HOH HOH . C 3 HOH A 66 364 69 HOH HOH . C 3 HOH A 67 365 70 HOH HOH . C 3 HOH A 68 366 71 HOH HOH . C 3 HOH A 69 367 72 HOH HOH . C 3 HOH A 70 368 73 HOH HOH . C 3 HOH A 71 369 74 HOH HOH . C 3 HOH A 72 370 75 HOH HOH . C 3 HOH A 73 371 76 HOH HOH . C 3 HOH A 74 372 77 HOH HOH . C 3 HOH A 75 373 78 HOH HOH . C 3 HOH A 76 374 79 HOH HOH . C 3 HOH A 77 375 80 HOH HOH . C 3 HOH A 78 376 81 HOH HOH . C 3 HOH A 79 377 82 HOH HOH . C 3 HOH A 80 378 83 HOH HOH . C 3 HOH A 81 379 84 HOH HOH . C 3 HOH A 82 380 85 HOH HOH . C 3 HOH A 83 381 86 HOH HOH . C 3 HOH A 84 382 87 HOH HOH . C 3 HOH A 85 383 88 HOH HOH . C 3 HOH A 86 384 89 HOH HOH . C 3 HOH A 87 385 90 HOH HOH . C 3 HOH A 88 386 91 HOH HOH . C 3 HOH A 89 387 92 HOH HOH . C 3 HOH A 90 388 93 HOH HOH . C 3 HOH A 91 389 95 HOH HOH . C 3 HOH A 92 390 97 HOH HOH . C 3 HOH A 93 391 98 HOH HOH . C 3 HOH A 94 392 99 HOH HOH . C 3 HOH A 95 393 101 HOH HOH . C 3 HOH A 96 394 102 HOH HOH . C 3 HOH A 97 395 104 HOH HOH . C 3 HOH A 98 396 105 HOH HOH . C 3 HOH A 99 397 106 HOH HOH . C 3 HOH A 100 398 107 HOH HOH . C 3 HOH A 101 399 108 HOH HOH . C 3 HOH A 102 400 110 HOH HOH . C 3 HOH A 103 401 111 HOH HOH . C 3 HOH A 104 402 112 HOH HOH . C 3 HOH A 105 403 113 HOH HOH . C 3 HOH A 106 404 114 HOH HOH . C 3 HOH A 107 405 115 HOH HOH . C 3 HOH A 108 406 116 HOH HOH . C 3 HOH A 109 407 117 HOH HOH . C 3 HOH A 110 408 118 HOH HOH . C 3 HOH A 111 409 119 HOH HOH . C 3 HOH A 112 410 120 HOH HOH . C 3 HOH A 113 411 121 HOH HOH . C 3 HOH A 114 412 122 HOH HOH . C 3 HOH A 115 413 123 HOH HOH . C 3 HOH A 116 414 124 HOH HOH . C 3 HOH A 117 415 125 HOH HOH . C 3 HOH A 118 416 126 HOH HOH . C 3 HOH A 119 417 127 HOH HOH . C 3 HOH A 120 418 128 HOH HOH . C 3 HOH A 121 419 129 HOH HOH . C 3 HOH A 122 420 130 HOH HOH . C 3 HOH A 123 421 131 HOH HOH . C 3 HOH A 124 422 132 HOH HOH . C 3 HOH A 125 423 133 HOH HOH . C 3 HOH A 126 424 135 HOH HOH . C 3 HOH A 127 425 136 HOH HOH . C 3 HOH A 128 426 137 HOH HOH . C 3 HOH A 129 427 138 HOH HOH . C 3 HOH A 130 428 139 HOH HOH . C 3 HOH A 131 429 140 HOH HOH . C 3 HOH A 132 430 141 HOH HOH . C 3 HOH A 133 431 142 HOH HOH . C 3 HOH A 134 432 143 HOH HOH . C 3 HOH A 135 433 144 HOH HOH . C 3 HOH A 136 434 145 HOH HOH . C 3 HOH A 137 435 146 HOH HOH . C 3 HOH A 138 436 147 HOH HOH . C 3 HOH A 139 437 148 HOH HOH . C 3 HOH A 140 438 149 HOH HOH . C 3 HOH A 141 439 150 HOH HOH . C 3 HOH A 142 440 151 HOH HOH . C 3 HOH A 143 441 152 HOH HOH . C 3 HOH A 144 442 153 HOH HOH . C 3 HOH A 145 443 154 HOH HOH . C 3 HOH A 146 444 155 HOH HOH . C 3 HOH A 147 445 156 HOH HOH . C 3 HOH A 148 446 157 HOH HOH . C 3 HOH A 149 447 158 HOH HOH . C 3 HOH A 150 448 159 HOH HOH . C 3 HOH A 151 449 160 HOH HOH . C 3 HOH A 152 450 161 HOH HOH . C 3 HOH A 153 451 163 HOH HOH . C 3 HOH A 154 452 164 HOH HOH . C 3 HOH A 155 453 165 HOH HOH . C 3 HOH A 156 454 166 HOH HOH . C 3 HOH A 157 455 167 HOH HOH . C 3 HOH A 158 456 168 HOH HOH . C 3 HOH A 159 457 169 HOH HOH . C 3 HOH A 160 458 171 HOH HOH . C 3 HOH A 161 459 172 HOH HOH . C 3 HOH A 162 460 173 HOH HOH . C 3 HOH A 163 461 174 HOH HOH . C 3 HOH A 164 462 175 HOH HOH . C 3 HOH A 165 463 176 HOH HOH . C 3 HOH A 166 464 177 HOH HOH . C 3 HOH A 167 465 178 HOH HOH . C 3 HOH A 168 466 179 HOH HOH . C 3 HOH A 169 467 180 HOH HOH . C 3 HOH A 170 468 181 HOH HOH . C 3 HOH A 171 469 182 HOH HOH . C 3 HOH A 172 470 184 HOH HOH . C 3 HOH A 173 471 186 HOH HOH . C 3 HOH A 174 472 187 HOH HOH . C 3 HOH A 175 473 188 HOH HOH . C 3 HOH A 176 474 189 HOH HOH . C 3 HOH A 177 475 190 HOH HOH . C 3 HOH A 178 476 192 HOH HOH . C 3 HOH A 179 477 193 HOH HOH . C 3 HOH A 180 478 195 HOH HOH . C 3 HOH A 181 479 196 HOH HOH . C 3 HOH A 182 480 197 HOH HOH . C 3 HOH A 183 481 198 HOH HOH . C 3 HOH A 184 482 199 HOH HOH . C 3 HOH A 185 483 200 HOH HOH . C 3 HOH A 186 484 201 HOH HOH . C 3 HOH A 187 485 202 HOH HOH . C 3 HOH A 188 486 203 HOH HOH . C 3 HOH A 189 487 204 HOH HOH . C 3 HOH A 190 488 205 HOH HOH . C 3 HOH A 191 489 206 HOH HOH . C 3 HOH A 192 490 207 HOH HOH . C 3 HOH A 193 491 208 HOH HOH . C 3 HOH A 194 492 209 HOH HOH . C 3 HOH A 195 493 210 HOH HOH . C 3 HOH A 196 494 211 HOH HOH . C 3 HOH A 197 495 212 HOH HOH . C 3 HOH A 198 496 213 HOH HOH . C 3 HOH A 199 497 214 HOH HOH . C 3 HOH A 200 498 215 HOH HOH . C 3 HOH A 201 499 216 HOH HOH . C 3 HOH A 202 500 217 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 NS9 . . . B 2 1.643 -4.801 -29.255 1 21.24 ? N1 NS9 0 A 1 HETATM 2 N N2 NS9 . . . B 2 1.525 -5.94 -28.713 1 25.79 ? N2 NS9 0 A 1 HETATM 3 C C3 NS9 . . . B 2 2.442 -6.966 -28.596 1 25.02 ? C3 NS9 0 A 1 HETATM 4 C C4 NS9 . . . B 2 2.08 -8.099 -27.833 1 25.16 ? C4 NS9 0 A 1 HETATM 5 C C5 NS9 . . . B 2 0.766 -8.202 -27.237 1 25.35 ? C5 NS9 0 A 1 HETATM 6 N N6 NS9 . . . B 2 -0.135 -7.161 -27.32 1 20.42 ? N6 NS9 0 A 1 HETATM 7 C C7 NS9 . . . B 2 0.253 -6.065 -28.056 1 24.28 ? C7 NS9 0 A 1 HETATM 8 C C8 NS9 . . . B 2 -0.364 -4.851 -28.38 1 20.19 ? C8 NS9 0 A 1 HETATM 9 C C9 NS9 . . . B 2 0.503 -4.116 -29.101 1 19.72 ? C9 NS9 0 A 1 HETATM 10 N N10 NS9 . . . B 2 3.652 -6.804 -29.188 1 24.32 ? N10 NS9 0 A 1 HETATM 11 C C11 NS9 . . . B 2 4.783 -7.764 -28.966 1 22.27 ? C11 NS9 0 A 1 HETATM 12 C C12 NS9 . . . B 2 4.723 -8.855 -30.014 1 23.22 ? C12 NS9 0 A 1 HETATM 13 C C13 NS9 . . . B 2 4.735 -8.486 -31.365 1 22.1 ? C13 NS9 0 A 1 HETATM 14 C C14 NS9 . . . B 2 4.681 -9.45 -32.365 1 26.74 ? C14 NS9 0 A 1 HETATM 15 C C15 NS9 . . . B 2 4.615 -10.813 -32.008 1 26.64 ? C15 NS9 0 A 1 HETATM 16 C C16 NS9 . . . B 2 4.622 -11.141 -30.674 1 25.64 ? C16 NS9 0 A 1 HETATM 17 C C17 NS9 . . . B 2 4.665 -10.19 -29.646 1 23.11 ? C17 NS9 0 A 1 HETATM 18 N N18 NS9 . . . B 2 0.492 -9.312 -26.519 1 23.63 ? N18 NS9 0 A 1 HETATM 19 C C19 NS9 . . . B 2 -0.902 -9.572 -26.01 1 24.08 ? C19 NS9 0 A 1 HETATM 20 C C20 NS9 . . . B 2 -1.083 -9.212 -24.55 1 23.39 ? C20 NS9 0 A 1 HETATM 21 C C21 NS9 . . . B 2 -0.731 -7.724 -24.18 1 24.53 ? C21 NS9 0 A 1 HETATM 22 O O22 NS9 . . . B 2 -1.592 -6.946 -24.962 1 24.81 ? O22 NS9 0 A 1 HETATM 23 C C23 NS9 . . . B 2 -1.195 -11.098 -26.193 1 27.44 ? C23 NS9 0 A 1 HETATM 24 O O24 NS9 . . . B 2 -0.009 -11.887 -25.921 1 34.58 ? O24 NS9 0 A 1 HETATM 25 O O25 NS9 . . . B 2 -2.485 -9.519 -24.21 1 25.67 ? O25 NS9 0 A 1 HETATM 26 C C26 NS9 . . . B 2 -1.746 -4.411 -27.963 1 18.7 ? C26 NS9 0 A 1 HETATM 27 C C27 NS9 . . . B 2 -1.753 -4.071 -26.449 1 16.72 ? C27 NS9 0 A 1 HETATM 28 C C28 NS9 . . . B 2 -2.867 -5.487 -28.199 1 19.59 ? C28 NS9 0 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 224 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 28 #