data_3NT4 # _model_server_result.job_id 2CjDSqZpV52sTk2fVYYtMQ _model_server_result.datetime_utc '2024-12-27 20:54:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nt4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":400}' # _entry.id 3NT4 # _exptl.entry_id 3NT4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 665.441 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3NT4 _cell.length_a 184.368 _cell.length_b 184.368 _cell.length_c 184.368 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NT4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 199 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA hexameric 6 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1,2 A,B,C,D,E,F,G,H 2 1,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 15_455 -x-1/2,y,-z -1 0 0 0 1 0 0 0 -1 -92.184 0 0 3 'crystal symmetry operation' 8_555 -z,x+1/2,-y+1/2 0 0 -1 1 0 0 0 -1 0 0 92.184 92.184 4 'crystal symmetry operation' 11_455 y-1/2,-z+1/2,-x 0 1 0 0 0 -1 -1 0 0 -92.184 92.184 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C21 H29 N7 O14 P2' _chem_comp.formula_weight 665.441 _chem_comp.id NAI _chem_comp.mon_nstd_flag . _chem_comp.name '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms NADH # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAI doub 261 n n PA O2A NAI sing 262 n n PA O5B NAI sing 263 n n PA O3 NAI sing 264 n n O2A HOA2 NAI sing 265 n n O5B C5B NAI sing 266 n n C5B C4B NAI sing 267 n n C5B H51A NAI sing 268 n n C5B H52A NAI sing 269 n n C4B O4B NAI sing 270 n n C4B C3B NAI sing 271 n n C4B H4B NAI sing 272 n n O4B C1B NAI sing 273 n n C3B O3B NAI sing 274 n n C3B C2B NAI sing 275 n n C3B H3B NAI sing 276 n n O3B HO3A NAI sing 277 n n C2B O2B NAI sing 278 n n C2B C1B NAI sing 279 n n C2B H2B NAI sing 280 n n O2B HO2A NAI sing 281 n n C1B N9A NAI sing 282 n n C1B H1B NAI sing 283 n n N9A C8A NAI sing 284 n y N9A C4A NAI sing 285 n y C8A N7A NAI doub 286 n y C8A H8A NAI sing 287 n n N7A C5A NAI sing 288 n y C5A C6A NAI sing 289 n y C5A C4A NAI doub 290 n y C6A N6A NAI sing 291 n n C6A N1A NAI doub 292 n y N6A H61A NAI sing 293 n n N6A H62A NAI sing 294 n n N1A C2A NAI sing 295 n y C2A N3A NAI doub 296 n y C2A H2A NAI sing 297 n n N3A C4A NAI sing 298 n y O3 PN NAI sing 299 n n PN O1N NAI sing 300 n n PN O2N NAI doub 301 n n PN O5D NAI sing 302 n n O1N HO1N NAI sing 303 n n O5D C5D NAI sing 304 n n C5D C4D NAI sing 305 n n C5D H51N NAI sing 306 n n C5D H52N NAI sing 307 n n C4D O4D NAI sing 308 n n C4D C3D NAI sing 309 n n C4D H4D NAI sing 310 n n O4D C1D NAI sing 311 n n C3D O3D NAI sing 312 n n C3D C2D NAI sing 313 n n C3D H3D NAI sing 314 n n O3D HO3N NAI sing 315 n n C2D O2D NAI sing 316 n n C2D C1D NAI sing 317 n n C2D H2D NAI sing 318 n n O2D HO2N NAI sing 319 n n C1D N1N NAI sing 320 n n C1D H1D NAI sing 321 n n N1N C2N NAI sing 322 n n N1N C6N NAI sing 323 n n C2N C3N NAI doub 324 n n C2N H2N NAI sing 325 n n C3N C7N NAI sing 326 n n C3N C4N NAI sing 327 n n C7N O7N NAI doub 328 n n C7N N7N NAI sing 329 n n N7N H71N NAI sing 330 n n N7N H72N NAI sing 331 n n C4N C5N NAI sing 332 n n C4N H4N NAI sing 333 n n C4N H42N NAI sing 334 n n C5N C6N NAI doub 335 n n C5N H5N NAI sing 336 n n C6N H6N NAI sing 337 n n # _atom_sites.entry_id 3NT4 _atom_sites.fract_transf_matrix[1][1] 0.005424 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005424 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005424 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAI A 1 400 400 NAI NAI . D 3 INS A 1 801 801 INS INS . E 2 NAI B 1 400 400 NAI NAI . F 3 INS B 1 802 802 INS INS . G 4 HOH A 1 345 1 HOH HOH . G 4 HOH A 2 346 2 HOH HOH . G 4 HOH A 3 347 3 HOH HOH . G 4 HOH A 4 348 4 HOH HOH . G 4 HOH A 5 349 5 HOH HOH . G 4 HOH A 6 350 6 HOH HOH . G 4 HOH A 7 351 8 HOH HOH . G 4 HOH A 8 352 10 HOH HOH . G 4 HOH A 9 353 12 HOH HOH . G 4 HOH A 10 354 13 HOH HOH . G 4 HOH A 11 355 14 HOH HOH . G 4 HOH A 12 356 15 HOH HOH . G 4 HOH A 13 357 16 HOH HOH . G 4 HOH A 14 358 17 HOH HOH . G 4 HOH A 15 359 18 HOH HOH . G 4 HOH A 16 360 19 HOH HOH . G 4 HOH A 17 361 21 HOH HOH . G 4 HOH A 18 362 23 HOH HOH . G 4 HOH A 19 363 24 HOH HOH . G 4 HOH A 20 364 25 HOH HOH . G 4 HOH A 21 365 26 HOH HOH . G 4 HOH A 22 366 27 HOH HOH . G 4 HOH A 23 367 28 HOH HOH . G 4 HOH A 24 368 31 HOH HOH . G 4 HOH A 25 369 32 HOH HOH . G 4 HOH A 26 370 34 HOH HOH . G 4 HOH A 27 371 35 HOH HOH . G 4 HOH A 28 372 36 HOH HOH . G 4 HOH A 29 373 37 HOH HOH . G 4 HOH A 30 374 39 HOH HOH . G 4 HOH A 31 375 42 HOH HOH . G 4 HOH A 32 376 44 HOH HOH . G 4 HOH A 33 377 46 HOH HOH . G 4 HOH A 34 378 47 HOH HOH . G 4 HOH A 35 379 48 HOH HOH . G 4 HOH A 36 380 52 HOH HOH . G 4 HOH A 37 381 53 HOH HOH . G 4 HOH A 38 382 54 HOH HOH . G 4 HOH A 39 383 56 HOH HOH . G 4 HOH A 40 384 57 HOH HOH . G 4 HOH A 41 385 59 HOH HOH . G 4 HOH A 42 386 60 HOH HOH . G 4 HOH A 43 387 61 HOH HOH . G 4 HOH A 44 388 64 HOH HOH . G 4 HOH A 45 389 65 HOH HOH . G 4 HOH A 46 390 66 HOH HOH . G 4 HOH A 47 391 68 HOH HOH . G 4 HOH A 48 392 69 HOH HOH . G 4 HOH A 49 393 70 HOH HOH . G 4 HOH A 50 394 71 HOH HOH . G 4 HOH A 51 395 73 HOH HOH . G 4 HOH A 52 396 74 HOH HOH . G 4 HOH A 53 397 76 HOH HOH . G 4 HOH A 54 398 78 HOH HOH . G 4 HOH A 55 399 79 HOH HOH . G 4 HOH A 56 401 80 HOH HOH . G 4 HOH A 57 402 81 HOH HOH . G 4 HOH A 58 403 82 HOH HOH . G 4 HOH A 59 404 83 HOH HOH . G 4 HOH A 60 405 84 HOH HOH . G 4 HOH A 61 406 85 HOH HOH . G 4 HOH A 62 407 86 HOH HOH . G 4 HOH A 63 408 88 HOH HOH . G 4 HOH A 64 409 90 HOH HOH . G 4 HOH A 65 410 91 HOH HOH . G 4 HOH A 66 411 93 HOH HOH . G 4 HOH A 67 412 95 HOH HOH . G 4 HOH A 68 413 97 HOH HOH . G 4 HOH A 69 414 98 HOH HOH . G 4 HOH A 70 415 101 HOH HOH . G 4 HOH A 71 416 103 HOH HOH . G 4 HOH A 72 417 104 HOH HOH . G 4 HOH A 73 418 105 HOH HOH . G 4 HOH A 74 419 106 HOH HOH . H 4 HOH B 1 345 7 HOH HOH . H 4 HOH B 2 346 9 HOH HOH . H 4 HOH B 3 347 11 HOH HOH . H 4 HOH B 4 348 20 HOH HOH . H 4 HOH B 5 349 22 HOH HOH . H 4 HOH B 6 350 29 HOH HOH . H 4 HOH B 7 351 30 HOH HOH . H 4 HOH B 8 352 33 HOH HOH . H 4 HOH B 9 353 38 HOH HOH . H 4 HOH B 10 354 43 HOH HOH . H 4 HOH B 11 355 45 HOH HOH . H 4 HOH B 12 356 49 HOH HOH . H 4 HOH B 13 357 50 HOH HOH . H 4 HOH B 14 358 51 HOH HOH . H 4 HOH B 15 359 55 HOH HOH . H 4 HOH B 16 360 58 HOH HOH . H 4 HOH B 17 361 62 HOH HOH . H 4 HOH B 18 362 63 HOH HOH . H 4 HOH B 19 363 67 HOH HOH . H 4 HOH B 20 364 72 HOH HOH . H 4 HOH B 21 365 77 HOH HOH . H 4 HOH B 22 366 87 HOH HOH . H 4 HOH B 23 367 89 HOH HOH . H 4 HOH B 24 368 92 HOH HOH . H 4 HOH B 25 369 94 HOH HOH . H 4 HOH B 26 370 96 HOH HOH . H 4 HOH B 27 371 99 HOH HOH . H 4 HOH B 28 372 100 HOH HOH . H 4 HOH B 29 373 102 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAI . . . E 2 -31.041 47.383 19.405 1 151.82 ? PA NAI 400 B 1 HETATM 2 O O1A NAI . . . E 2 -30.147 47.324 20.615 1 136.66 ? O1A NAI 400 B 1 HETATM 3 O O2A NAI . . . E 2 -30.208 47.516 18.149 1 122.27 ? O2A NAI 400 B 1 HETATM 4 O O5B NAI . . . E 2 -31.91 48.594 19.59 1 133.58 ? O5B NAI 400 B 1 HETATM 5 C C5B NAI . . . E 2 -31.675 49.435 20.709 1 119.3 ? C5B NAI 400 B 1 HETATM 6 C C4B NAI . . . E 2 -31.118 50.744 20.171 1 121.44 ? C4B NAI 400 B 1 HETATM 7 O O4B NAI . . . E 2 -31.875 51.861 20.597 1 123.77 ? O4B NAI 400 B 1 HETATM 8 C C3B NAI . . . E 2 -29.699 51.002 20.641 1 136.39 ? C3B NAI 400 B 1 HETATM 9 O O3B NAI . . . E 2 -28.874 51.342 19.539 1 130.95 ? O3B NAI 400 B 1 HETATM 10 C C2B NAI . . . E 2 -29.786 52.163 21.607 1 135.04 ? C2B NAI 400 B 1 HETATM 11 O O2B NAI . . . E 2 -28.743 53.075 21.312 1 134.3 ? O2B NAI 400 B 1 HETATM 12 C C1B NAI . . . E 2 -31.158 52.786 21.395 1 130.95 ? C1B NAI 400 B 1 HETATM 13 N N9A NAI . . . E 2 -31.88 53.056 22.659 1 139.74 ? N9A NAI 400 B 1 HETATM 14 C C8A NAI . . . E 2 -31.984 52.236 23.729 1 137.97 ? C8A NAI 400 B 1 HETATM 15 N N7A NAI . . . E 2 -32.761 52.807 24.684 1 136.66 ? N7A NAI 400 B 1 HETATM 16 C C5A NAI . . . E 2 -33.165 53.994 24.225 1 139.75 ? C5A NAI 400 B 1 HETATM 17 C C6A NAI . . . E 2 -34.004 55.103 24.72 1 134.17 ? C6A NAI 400 B 1 HETATM 18 N N6A NAI . . . E 2 -34.58 55.006 25.981 1 131.55 ? N6A NAI 400 B 1 HETATM 19 N N1A NAI . . . E 2 -34.186 56.176 23.937 1 127.53 ? N1A NAI 400 B 1 HETATM 20 C C2A NAI . . . E 2 -33.626 56.267 22.713 1 129.46 ? C2A NAI 400 B 1 HETATM 21 N N3A NAI . . . E 2 -32.85 55.289 22.201 1 132.55 ? N3A NAI 400 B 1 HETATM 22 C C4A NAI . . . E 2 -32.587 54.165 22.887 1 138.18 ? C4A NAI 400 B 1 HETATM 23 O O3 NAI . . . E 2 -31.913 46.145 19.442 1 132.22 ? O3 NAI 400 B 1 HETATM 24 P PN NAI . . . E 2 -32.885 45.684 18.386 1 127.44 ? PN NAI 400 B 1 HETATM 25 O O1N NAI . . . E 2 -32.94 44.186 18.364 1 127.42 ? O1N NAI 400 B 1 HETATM 26 O O2N NAI . . . E 2 -32.43 46.259 17.062 1 111.94 ? O2N NAI 400 B 1 HETATM 27 O O5D NAI . . . E 2 -34.265 46.208 18.728 1 130.19 ? O5D NAI 400 B 1 HETATM 28 C C5D NAI . . . E 2 -34.609 46.675 20.029 1 129.93 ? C5D NAI 400 B 1 HETATM 29 C C4D NAI . . . E 2 -36.023 46.27 20.427 1 129.13 ? C4D NAI 400 B 1 HETATM 30 O O4D NAI . . . E 2 -36.716 45.666 19.342 1 127.44 ? O4D NAI 400 B 1 HETATM 31 C C3D NAI . . . E 2 -36.076 45.23 21.538 1 135.87 ? C3D NAI 400 B 1 HETATM 32 O O3D NAI . . . E 2 -37.15 45.516 22.432 1 123.95 ? O3D NAI 400 B 1 HETATM 33 C C2D NAI . . . E 2 -36.315 43.907 20.833 1 131.24 ? C2D NAI 400 B 1 HETATM 34 O O2D NAI . . . E 2 -37.013 43.032 21.71 1 122.73 ? O2D NAI 400 B 1 HETATM 35 C C1D NAI . . . E 2 -37.117 44.323 19.598 1 125.83 ? C1D NAI 400 B 1 HETATM 36 N N1N NAI . . . E 2 -36.965 43.464 18.41 1 130.84 ? N1N NAI 400 B 1 HETATM 37 C C2N NAI . . . E 2 -38.032 43.13 17.661 1 123.84 ? C2N NAI 400 B 1 HETATM 38 C C3N NAI . . . E 2 -37.953 42.035 16.792 1 120.4 ? C3N NAI 400 B 1 HETATM 39 C C7N NAI . . . E 2 -39.143 41.163 16.458 1 118.54 ? C7N NAI 400 B 1 HETATM 40 O O7N NAI . . . E 2 -38.963 40.193 15.734 1 121.52 ? O7N NAI 400 B 1 HETATM 41 N N7N NAI . . . E 2 -40.361 41.384 16.964 1 108.37 ? N7N NAI 400 B 1 HETATM 42 C C4N NAI . . . E 2 -36.682 41.62 16.385 1 120.83 ? C4N NAI 400 B 1 HETATM 43 C C5N NAI . . . E 2 -35.567 42.067 17.078 1 120.31 ? C5N NAI 400 B 1 HETATM 44 C C6N NAI . . . E 2 -35.757 42.915 18.165 1 127.4 ? C6N NAI 400 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 44 #