data_3NT4 # _model_server_result.job_id UZjhpDR-4RG_eqzRBdSrpQ _model_server_result.datetime_utc '2024-12-27 20:17:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nt4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":802}' # _entry.id 3NT4 # _exptl.entry_id 3NT4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXANE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3NT4 _cell.length_a 184.368 _cell.length_b 184.368 _cell.length_c 184.368 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NT4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 199 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA hexameric 6 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1,2 A,B,C,D,E,F,G,H 2 1,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 15_455 -x-1/2,y,-z -1 0 0 0 1 0 0 0 -1 -92.184 0 0 3 'crystal symmetry operation' 8_555 -z,x+1/2,-y+1/2 0 0 -1 1 0 0 0 -1 0 0 92.184 92.184 4 'crystal symmetry operation' 11_455 y-1/2,-z+1/2,-x 0 1 0 0 0 -1 -1 0 0 -92.184 92.184 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id INS _chem_comp.mon_nstd_flag . _chem_comp.name 1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms MYO-INOSITOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 INS sing 173 n n C1 C6 INS sing 174 n n C1 O1 INS sing 175 n n C1 H1 INS sing 176 n n C2 C3 INS sing 177 n n C2 O2 INS sing 178 n n C2 H2 INS sing 179 n n C3 C4 INS sing 180 n n C3 O3 INS sing 181 n n C3 H3 INS sing 182 n n C4 C5 INS sing 183 n n C4 O4 INS sing 184 n n C4 H4 INS sing 185 n n C5 C6 INS sing 186 n n C5 O5 INS sing 187 n n C5 H5 INS sing 188 n n C6 O6 INS sing 189 n n C6 H6 INS sing 190 n n O1 HO1 INS sing 191 n n O2 HO2 INS sing 192 n n O3 HO3 INS sing 193 n n O4 HO4 INS sing 194 n n O5 HO5 INS sing 195 n n O6 HO6 INS sing 196 n n # _atom_sites.entry_id 3NT4 _atom_sites.fract_transf_matrix[1][1] 0.005424 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005424 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005424 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAI A 1 400 400 NAI NAI . D 3 INS A 1 801 801 INS INS . E 2 NAI B 1 400 400 NAI NAI . F 3 INS B 1 802 802 INS INS . G 4 HOH A 1 345 1 HOH HOH . G 4 HOH A 2 346 2 HOH HOH . G 4 HOH A 3 347 3 HOH HOH . G 4 HOH A 4 348 4 HOH HOH . G 4 HOH A 5 349 5 HOH HOH . G 4 HOH A 6 350 6 HOH HOH . G 4 HOH A 7 351 8 HOH HOH . G 4 HOH A 8 352 10 HOH HOH . G 4 HOH A 9 353 12 HOH HOH . G 4 HOH A 10 354 13 HOH HOH . G 4 HOH A 11 355 14 HOH HOH . G 4 HOH A 12 356 15 HOH HOH . G 4 HOH A 13 357 16 HOH HOH . G 4 HOH A 14 358 17 HOH HOH . G 4 HOH A 15 359 18 HOH HOH . G 4 HOH A 16 360 19 HOH HOH . G 4 HOH A 17 361 21 HOH HOH . G 4 HOH A 18 362 23 HOH HOH . G 4 HOH A 19 363 24 HOH HOH . G 4 HOH A 20 364 25 HOH HOH . G 4 HOH A 21 365 26 HOH HOH . G 4 HOH A 22 366 27 HOH HOH . G 4 HOH A 23 367 28 HOH HOH . G 4 HOH A 24 368 31 HOH HOH . G 4 HOH A 25 369 32 HOH HOH . G 4 HOH A 26 370 34 HOH HOH . G 4 HOH A 27 371 35 HOH HOH . G 4 HOH A 28 372 36 HOH HOH . G 4 HOH A 29 373 37 HOH HOH . G 4 HOH A 30 374 39 HOH HOH . G 4 HOH A 31 375 42 HOH HOH . G 4 HOH A 32 376 44 HOH HOH . G 4 HOH A 33 377 46 HOH HOH . G 4 HOH A 34 378 47 HOH HOH . G 4 HOH A 35 379 48 HOH HOH . G 4 HOH A 36 380 52 HOH HOH . G 4 HOH A 37 381 53 HOH HOH . G 4 HOH A 38 382 54 HOH HOH . G 4 HOH A 39 383 56 HOH HOH . G 4 HOH A 40 384 57 HOH HOH . G 4 HOH A 41 385 59 HOH HOH . G 4 HOH A 42 386 60 HOH HOH . G 4 HOH A 43 387 61 HOH HOH . G 4 HOH A 44 388 64 HOH HOH . G 4 HOH A 45 389 65 HOH HOH . G 4 HOH A 46 390 66 HOH HOH . G 4 HOH A 47 391 68 HOH HOH . G 4 HOH A 48 392 69 HOH HOH . G 4 HOH A 49 393 70 HOH HOH . G 4 HOH A 50 394 71 HOH HOH . G 4 HOH A 51 395 73 HOH HOH . G 4 HOH A 52 396 74 HOH HOH . G 4 HOH A 53 397 76 HOH HOH . G 4 HOH A 54 398 78 HOH HOH . G 4 HOH A 55 399 79 HOH HOH . G 4 HOH A 56 401 80 HOH HOH . G 4 HOH A 57 402 81 HOH HOH . G 4 HOH A 58 403 82 HOH HOH . G 4 HOH A 59 404 83 HOH HOH . G 4 HOH A 60 405 84 HOH HOH . G 4 HOH A 61 406 85 HOH HOH . G 4 HOH A 62 407 86 HOH HOH . G 4 HOH A 63 408 88 HOH HOH . G 4 HOH A 64 409 90 HOH HOH . G 4 HOH A 65 410 91 HOH HOH . G 4 HOH A 66 411 93 HOH HOH . G 4 HOH A 67 412 95 HOH HOH . G 4 HOH A 68 413 97 HOH HOH . G 4 HOH A 69 414 98 HOH HOH . G 4 HOH A 70 415 101 HOH HOH . G 4 HOH A 71 416 103 HOH HOH . G 4 HOH A 72 417 104 HOH HOH . G 4 HOH A 73 418 105 HOH HOH . G 4 HOH A 74 419 106 HOH HOH . H 4 HOH B 1 345 7 HOH HOH . H 4 HOH B 2 346 9 HOH HOH . H 4 HOH B 3 347 11 HOH HOH . H 4 HOH B 4 348 20 HOH HOH . H 4 HOH B 5 349 22 HOH HOH . H 4 HOH B 6 350 29 HOH HOH . H 4 HOH B 7 351 30 HOH HOH . H 4 HOH B 8 352 33 HOH HOH . H 4 HOH B 9 353 38 HOH HOH . H 4 HOH B 10 354 43 HOH HOH . H 4 HOH B 11 355 45 HOH HOH . H 4 HOH B 12 356 49 HOH HOH . H 4 HOH B 13 357 50 HOH HOH . H 4 HOH B 14 358 51 HOH HOH . H 4 HOH B 15 359 55 HOH HOH . H 4 HOH B 16 360 58 HOH HOH . H 4 HOH B 17 361 62 HOH HOH . H 4 HOH B 18 362 63 HOH HOH . H 4 HOH B 19 363 67 HOH HOH . H 4 HOH B 20 364 72 HOH HOH . H 4 HOH B 21 365 77 HOH HOH . H 4 HOH B 22 366 87 HOH HOH . H 4 HOH B 23 367 89 HOH HOH . H 4 HOH B 24 368 92 HOH HOH . H 4 HOH B 25 369 94 HOH HOH . H 4 HOH B 26 370 96 HOH HOH . H 4 HOH B 27 371 99 HOH HOH . H 4 HOH B 28 372 100 HOH HOH . H 4 HOH B 29 373 102 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 INS . . . F 3 -36.75 37.423 15.968 1 125.23 ? C1 INS 802 B 1 HETATM 2 C C2 INS . . . F 3 -38.182 36.97 16.301 1 122.14 ? C2 INS 802 B 1 HETATM 3 C C3 INS . . . F 3 -38.341 35.462 16.463 1 102.13 ? C3 INS 802 B 1 HETATM 4 C C4 INS . . . F 3 -37.162 34.893 17.248 1 97.01 ? C4 INS 802 B 1 HETATM 5 C C5 INS . . . F 3 -35.865 35.245 16.572 1 100.81 ? C5 INS 802 B 1 HETATM 6 C C6 INS . . . F 3 -35.665 36.715 16.775 1 114.57 ? C6 INS 802 B 1 HETATM 7 O O1 INS . . . F 3 -36.631 38.842 16.158 1 120.32 ? O1 INS 802 B 1 HETATM 8 O O2 INS . . . F 3 -38.63 37.573 17.527 1 118.82 ? O2 INS 802 B 1 HETATM 9 O O3 INS . . . F 3 -39.568 35.242 17.177 1 106.02 ? O3 INS 802 B 1 HETATM 10 O O4 INS . . . F 3 -37.193 33.47 17.289 1 104.81 ? O4 INS 802 B 1 HETATM 11 O O5 INS . . . F 3 -34.807 34.535 17.195 1 117.18 ? O5 INS 802 B 1 HETATM 12 O O6 INS . . . F 3 -34.354 37.049 16.309 1 113.07 ? O6 INS 802 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 12 #