data_3NT5 # _model_server_result.job_id IS1OFvEqJ8JQPMmvPDlMxw _model_server_result.datetime_utc '2025-02-18 09:26:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nt5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":345}' # _entry.id 3NT5 # _exptl.entry_id 3NT5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 178.14 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2R,3S,4s,5R,6S)-2,3,4,5,6-pentahydroxycyclohexanone _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3NT5 _cell.length_a 183.498 _cell.length_b 183.498 _cell.length_c 183.498 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NT5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 199 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA hexameric 6 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1,2 A,B,C,D,E,F 2 1,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 15_455 -x-1/2,y,-z -1 0 0 0 1 0 0 0 -1 -91.749 0 0 3 'crystal symmetry operation' 8_555 -z,x+1/2,-y+1/2 0 0 -1 1 0 0 0 -1 0 0 91.749 91.749 4 'crystal symmetry operation' 11_455 y-1/2,-z+1/2,-x 0 1 0 0 0 -1 -1 0 0 -91.749 91.749 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C6 H10 O6' _chem_comp.formula_weight 178.14 _chem_comp.id ISE _chem_comp.mon_nstd_flag . _chem_comp.name (2R,3S,4s,5R,6S)-2,3,4,5,6-pentahydroxycyclohexanone _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Inosose;Myo-inosose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C6 C1 ISE sing 171 n n C2 C1 ISE sing 172 n n C1 O1 ISE sing 173 n n C1 H1 ISE sing 174 n n O1 HO1 ISE sing 175 n n C3 C2 ISE sing 176 n n C2 O2 ISE doub 177 n n O3 C3 ISE sing 178 n n C4 C3 ISE sing 179 n n C3 H3 ISE sing 180 n n O3 HO3 ISE sing 181 n n O4 C4 ISE sing 182 n n C5 C4 ISE sing 183 n n C4 H4 ISE sing 184 n n O4 HO4 ISE sing 185 n n O5 C5 ISE sing 186 n n C5 C6 ISE sing 187 n n C5 H5 ISE sing 188 n n O5 HO5 ISE sing 189 n n C6 O6 ISE sing 190 n n C6 H6 ISE sing 191 n n O6 HO6 ISE sing 192 n n # _atom_sites.entry_id 3NT5 _atom_sites.fract_transf_matrix[1][1] 0.00545 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00545 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00545 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 400 400 NAD NAD . D 3 ISE A 1 345 1 ISE ISE . E 4 NAI B 1 400 400 NAI NAI . F 3 ISE B 1 345 2 ISE ISE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ISE . . . F 3 -36.532 36.833 18.277 1 115.47 ? C1 ISE 345 B 1 HETATM 2 O O1 ISE . . . F 3 -36.353 37.071 19.694 1 115.47 ? O1 ISE 345 B 1 HETATM 3 C C2 ISE . . . F 3 -38.018 36.687 17.913 1 115.47 ? C2 ISE 345 B 1 HETATM 4 O O2 ISE . . . F 3 -38.92 36.94 18.693 1 115.47 ? O2 ISE 345 B 1 HETATM 5 C C3 ISE . . . F 3 -38.292 36.021 16.577 1 115.47 ? C3 ISE 345 B 1 HETATM 6 O O3 ISE . . . F 3 -39.685 35.683 16.428 1 115.47 ? O3 ISE 345 B 1 HETATM 7 C C4 ISE . . . F 3 -37.428 34.754 16.524 1 115.47 ? C4 ISE 345 B 1 HETATM 8 O O4 ISE . . . F 3 -37.827 33.9 15.457 1 115.47 ? O4 ISE 345 B 1 HETATM 9 C C5 ISE . . . F 3 -35.958 35.175 16.433 1 115.47 ? C5 ISE 345 B 1 HETATM 10 O O5 ISE . . . F 3 -35.105 34.078 16.089 1 115.47 ? O5 ISE 345 B 1 HETATM 11 C C6 ISE . . . F 3 -35.611 35.653 17.847 1 115.47 ? C6 ISE 345 B 1 HETATM 12 O O6 ISE . . . F 3 -34.227 36.041 17.902 1 115.47 ? O6 ISE 345 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 455 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 12 #