data_3NT5 # _model_server_result.job_id ATblhHYwDZuo_CqiM0bqlw _model_server_result.datetime_utc '2025-02-18 09:23:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nt5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":400}' # _entry.id 3NT5 # _exptl.entry_id 3NT5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 665.441 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3NT5 _cell.length_a 183.498 _cell.length_b 183.498 _cell.length_c 183.498 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NT5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 199 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA hexameric 6 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1,2 A,B,C,D,E,F 2 1,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 15_455 -x-1/2,y,-z -1 0 0 0 1 0 0 0 -1 -91.749 0 0 3 'crystal symmetry operation' 8_555 -z,x+1/2,-y+1/2 0 0 -1 1 0 0 0 -1 0 0 91.749 91.749 4 'crystal symmetry operation' 11_455 y-1/2,-z+1/2,-x 0 1 0 0 0 -1 -1 0 0 -91.749 91.749 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H29 N7 O14 P2' _chem_comp.formula_weight 665.441 _chem_comp.id NAI _chem_comp.mon_nstd_flag . _chem_comp.name '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms NADH # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAI doub 332 n n PA O2A NAI sing 333 n n PA O5B NAI sing 334 n n PA O3 NAI sing 335 n n O2A HOA2 NAI sing 336 n n O5B C5B NAI sing 337 n n C5B C4B NAI sing 338 n n C5B H51A NAI sing 339 n n C5B H52A NAI sing 340 n n C4B O4B NAI sing 341 n n C4B C3B NAI sing 342 n n C4B H4B NAI sing 343 n n O4B C1B NAI sing 344 n n C3B O3B NAI sing 345 n n C3B C2B NAI sing 346 n n C3B H3B NAI sing 347 n n O3B HO3A NAI sing 348 n n C2B O2B NAI sing 349 n n C2B C1B NAI sing 350 n n C2B H2B NAI sing 351 n n O2B HO2A NAI sing 352 n n C1B N9A NAI sing 353 n n C1B H1B NAI sing 354 n n N9A C8A NAI sing 355 n y N9A C4A NAI sing 356 n y C8A N7A NAI doub 357 n y C8A H8A NAI sing 358 n n N7A C5A NAI sing 359 n y C5A C6A NAI sing 360 n y C5A C4A NAI doub 361 n y C6A N6A NAI sing 362 n n C6A N1A NAI doub 363 n y N6A H61A NAI sing 364 n n N6A H62A NAI sing 365 n n N1A C2A NAI sing 366 n y C2A N3A NAI doub 367 n y C2A H2A NAI sing 368 n n N3A C4A NAI sing 369 n y O3 PN NAI sing 370 n n PN O1N NAI sing 371 n n PN O2N NAI doub 372 n n PN O5D NAI sing 373 n n O1N HO1N NAI sing 374 n n O5D C5D NAI sing 375 n n C5D C4D NAI sing 376 n n C5D H51N NAI sing 377 n n C5D H52N NAI sing 378 n n C4D O4D NAI sing 379 n n C4D C3D NAI sing 380 n n C4D H4D NAI sing 381 n n O4D C1D NAI sing 382 n n C3D O3D NAI sing 383 n n C3D C2D NAI sing 384 n n C3D H3D NAI sing 385 n n O3D HO3N NAI sing 386 n n C2D O2D NAI sing 387 n n C2D C1D NAI sing 388 n n C2D H2D NAI sing 389 n n O2D HO2N NAI sing 390 n n C1D N1N NAI sing 391 n n C1D H1D NAI sing 392 n n N1N C2N NAI sing 393 n n N1N C6N NAI sing 394 n n C2N C3N NAI doub 395 n n C2N H2N NAI sing 396 n n C3N C7N NAI sing 397 n n C3N C4N NAI sing 398 n n C7N O7N NAI doub 399 n n C7N N7N NAI sing 400 n n N7N H71N NAI sing 401 n n N7N H72N NAI sing 402 n n C4N C5N NAI sing 403 n n C4N H4N NAI sing 404 n n C4N H42N NAI sing 405 n n C5N C6N NAI doub 406 n n C5N H5N NAI sing 407 n n C6N H6N NAI sing 408 n n # _atom_sites.entry_id 3NT5 _atom_sites.fract_transf_matrix[1][1] 0.00545 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00545 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00545 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 400 400 NAD NAD . D 3 ISE A 1 345 1 ISE ISE . E 4 NAI B 1 400 400 NAI NAI . F 3 ISE B 1 345 2 ISE ISE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAI . . . E 4 -30.283 47.199 19.024 1 115.47 ? PA NAI 400 B 1 HETATM 2 O O1A NAI . . . E 4 -30.024 46.584 20.413 1 115.47 ? O1A NAI 400 B 1 HETATM 3 O O2A NAI . . . E 4 -29.014 47.875 18.481 1 115.47 ? O2A NAI 400 B 1 HETATM 4 O O5B NAI . . . E 4 -31.415 48.181 19.301 1 115.47 ? O5B NAI 400 B 1 HETATM 5 C C5B NAI . . . E 4 -31.445 48.877 20.539 1 115.47 ? C5B NAI 400 B 1 HETATM 6 C C4B NAI . . . E 4 -31.232 50.345 20.191 1 115.47 ? C4B NAI 400 B 1 HETATM 7 O O4B NAI . . . E 4 -32.077 51.193 20.959 1 115.47 ? O4B NAI 400 B 1 HETATM 8 C C3B NAI . . . E 4 -29.816 50.847 20.505 1 115.47 ? C3B NAI 400 B 1 HETATM 9 O O3B NAI . . . E 4 -29.106 51.249 19.33 1 115.47 ? O3B NAI 400 B 1 HETATM 10 C C2B NAI . . . E 4 -29.966 51.95 21.577 1 115.47 ? C2B NAI 400 B 1 HETATM 11 O O2B NAI . . . E 4 -29.796 53.274 21.087 1 115.47 ? O2B NAI 400 B 1 HETATM 12 C C1B NAI . . . E 4 -31.365 51.668 22.11 1 115.47 ? C1B NAI 400 B 1 HETATM 13 N N9A NAI . . . E 4 -32.113 52.558 23.059 1 115.47 ? N9A NAI 400 B 1 HETATM 14 C C8A NAI . . . E 4 -32.862 52.089 24.099 1 115.47 ? C8A NAI 400 B 1 HETATM 15 N N7A NAI . . . E 4 -33.585 53.085 24.681 1 115.47 ? N7A NAI 400 B 1 HETATM 16 C C5A NAI . . . E 4 -33.31 54.223 24.021 1 115.47 ? C5A NAI 400 B 1 HETATM 17 C C6A NAI . . . E 4 -33.727 55.648 24.142 1 115.47 ? C6A NAI 400 B 1 HETATM 18 N N6A NAI . . . E 4 -34.634 56.033 25.134 1 115.47 ? N6A NAI 400 B 1 HETATM 19 N N1A NAI . . . E 4 -33.207 56.534 23.271 1 115.47 ? N1A NAI 400 B 1 HETATM 20 C C2A NAI . . . E 4 -32.328 56.148 22.312 1 115.47 ? C2A NAI 400 B 1 HETATM 21 N N3A NAI . . . E 4 -31.89 54.876 22.138 1 115.47 ? N3A NAI 400 B 1 HETATM 22 C C4A NAI . . . E 4 -32.337 53.886 22.941 1 115.47 ? C4A NAI 400 B 1 HETATM 23 O O3 NAI . . . E 4 -30.762 46.129 18.017 1 115.47 ? O3 NAI 400 B 1 HETATM 24 P PN NAI . . . E 4 -32.192 45.712 17.695 1 115.47 ? PN NAI 400 B 1 HETATM 25 O O1N NAI . . . E 4 -32.254 44.674 16.59 1 115.47 ? O1N NAI 400 B 1 HETATM 26 O O2N NAI . . . E 4 -32.945 46.988 17.272 1 115.47 ? O2N NAI 400 B 1 HETATM 27 O O5D NAI . . . E 4 -32.677 45.073 18.999 1 115.47 ? O5D NAI 400 B 1 HETATM 28 C C5D NAI . . . E 4 -33.463 45.854 19.897 1 115.47 ? C5D NAI 400 B 1 HETATM 29 C C4D NAI . . . E 4 -34.949 45.572 19.705 1 115.47 ? C4D NAI 400 B 1 HETATM 30 O O4D NAI . . . E 4 -35.158 44.728 18.56 1 115.47 ? O4D NAI 400 B 1 HETATM 31 C C3D NAI . . . E 4 -35.55 44.774 20.866 1 115.47 ? C3D NAI 400 B 1 HETATM 32 O O3D NAI . . . E 4 -36.909 45.178 21.082 1 115.47 ? O3D NAI 400 B 1 HETATM 33 C C2D NAI . . . E 4 -35.506 43.331 20.372 1 115.47 ? C2D NAI 400 B 1 HETATM 34 O O2D NAI . . . E 4 -36.342 42.5 21.189 1 115.47 ? O2D NAI 400 B 1 HETATM 35 C C1D NAI . . . E 4 -35.934 43.568 18.903 1 115.47 ? C1D NAI 400 B 1 HETATM 36 N N1N NAI . . . E 4 -35.919 42.446 17.91 1 115.47 ? N1N NAI 400 B 1 HETATM 37 C C2N NAI . . . E 4 -34.851 41.615 17.739 1 115.47 ? C2N NAI 400 B 1 HETATM 38 C C3N NAI . . . E 4 -35.075 40.267 17.351 1 115.47 ? C3N NAI 400 B 1 HETATM 39 C C7N NAI . . . E 4 -33.961 39.298 16.976 1 115.47 ? C7N NAI 400 B 1 HETATM 40 O O7N NAI . . . E 4 -34.279 38.129 16.8 1 115.47 ? O7N NAI 400 B 1 HETATM 41 N N7N NAI . . . E 4 -32.73 39.692 16.587 1 115.47 ? N7N NAI 400 B 1 HETATM 42 C C4N NAI . . . E 4 -36.395 39.861 17.059 1 115.47 ? C4N NAI 400 B 1 HETATM 43 C C5N NAI . . . E 4 -37.389 40.829 16.892 1 115.47 ? C5N NAI 400 B 1 HETATM 44 C C6N NAI . . . E 4 -37.109 42.147 17.302 1 115.47 ? C6N NAI 400 B 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 44 #