data_3NTM # _model_server_result.job_id gf4MxMVfwfbfldLugd7jLg _model_server_result.datetime_utc '2024-11-15 01:25:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ntm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 3NTM # _exptl.entry_id 3NTM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 63.546 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COPPER (II) ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.61 _cell.angle_gamma 90 _cell.entry_id 3NTM _cell.length_a 46.01 _cell.length_b 78.48 _cell.length_c 74.55 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NTM _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 42 A HIS 42 1_555 C CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc2 A NE2 HIS 60 A HIS 60 1_555 C CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc3 A NE2 HIS 69 A HIS 69 1_555 C CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc4 A NE2 HIS 204 A HIS 204 1_555 D CU CU . A CU 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.603 ? metalc ? metalc5 A NE2 HIS 208 A HIS 208 1_555 D CU CU . A CU 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc6 A NE2 HIS 231 A HIS 231 1_555 D CU CU . A CU 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? metalc ? metalc7 F O HOH . A HOH 358 1_555 C CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc8 F O HOH . A HOH 358 1_555 D CU CU . A CU 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? metalc ? metalc9 B NE2 HIS 42 B HIS 42 1_555 E CU CU . B CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc10 B NE2 HIS 60 B HIS 60 1_555 E CU CU . B CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc11 B NE2 HIS 69 B HIS 69 1_555 E CU CU . B CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc12 G O HOH . B HOH 352 1_555 E CU CU . B CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? # _chem_comp.formula 'Cu 2' _chem_comp.formula_weight 63.546 _chem_comp.id CU _chem_comp.mon_nstd_flag . _chem_comp.name 'COPPER (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3NTM _atom_sites.fract_transf_matrix[1][1] 0.021734 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004465 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012742 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013694 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CU A 1 501 501 CU CU . D 2 CU A 1 502 502 CU CU . E 2 CU B 1 501 501 CU CU . F 3 HOH A 1 304 2 HOH HOH . F 3 HOH A 2 305 3 HOH HOH . F 3 HOH A 3 306 4 HOH HOH . F 3 HOH A 4 307 5 HOH HOH . F 3 HOH A 5 308 9 HOH HOH . F 3 HOH A 6 309 10 HOH HOH . F 3 HOH A 7 310 11 HOH HOH . F 3 HOH A 8 311 12 HOH HOH . F 3 HOH A 9 312 15 HOH HOH . F 3 HOH A 10 313 16 HOH HOH . F 3 HOH A 11 314 17 HOH HOH . F 3 HOH A 12 315 18 HOH HOH . F 3 HOH A 13 316 20 HOH HOH . F 3 HOH A 14 317 21 HOH HOH . F 3 HOH A 15 318 23 HOH HOH . F 3 HOH A 16 319 27 HOH HOH . F 3 HOH A 17 320 29 HOH HOH . F 3 HOH A 18 321 30 HOH HOH . F 3 HOH A 19 322 31 HOH HOH . F 3 HOH A 20 323 32 HOH HOH . F 3 HOH A 21 324 33 HOH HOH . F 3 HOH A 22 325 35 HOH HOH . F 3 HOH A 23 326 39 HOH HOH . F 3 HOH A 24 327 40 HOH HOH . F 3 HOH A 25 328 41 HOH HOH . F 3 HOH A 26 329 42 HOH HOH . F 3 HOH A 27 330 45 HOH HOH . F 3 HOH A 28 331 49 HOH HOH . F 3 HOH A 29 332 50 HOH HOH . F 3 HOH A 30 333 52 HOH HOH . F 3 HOH A 31 334 53 HOH HOH . F 3 HOH A 32 335 56 HOH HOH . F 3 HOH A 33 336 59 HOH HOH . F 3 HOH A 34 337 60 HOH HOH . F 3 HOH A 35 338 62 HOH HOH . F 3 HOH A 36 339 64 HOH HOH . F 3 HOH A 37 340 66 HOH HOH . F 3 HOH A 38 341 67 HOH HOH . F 3 HOH A 39 342 71 HOH HOH . F 3 HOH A 40 343 74 HOH HOH . F 3 HOH A 41 344 75 HOH HOH . F 3 HOH A 42 345 77 HOH HOH . F 3 HOH A 43 346 78 HOH HOH . F 3 HOH A 44 347 81 HOH HOH . F 3 HOH A 45 348 84 HOH HOH . F 3 HOH A 46 349 85 HOH HOH . F 3 HOH A 47 350 86 HOH HOH . F 3 HOH A 48 351 87 HOH HOH . F 3 HOH A 49 352 92 HOH HOH . F 3 HOH A 50 353 94 HOH HOH . F 3 HOH A 51 354 96 HOH HOH . F 3 HOH A 52 355 97 HOH HOH . F 3 HOH A 53 356 99 HOH HOH . F 3 HOH A 54 357 101 HOH HOH . F 3 HOH A 55 358 104 HOH HOH . F 3 HOH A 56 359 105 HOH HOH . F 3 HOH A 57 360 106 HOH HOH . F 3 HOH A 58 361 107 HOH HOH . F 3 HOH A 59 362 108 HOH HOH . F 3 HOH A 60 363 109 HOH HOH . F 3 HOH A 61 364 110 HOH HOH . F 3 HOH A 62 365 111 HOH HOH . F 3 HOH A 63 366 112 HOH HOH . F 3 HOH A 64 367 113 HOH HOH . F 3 HOH A 65 368 114 HOH HOH . F 3 HOH A 66 369 115 HOH HOH . F 3 HOH A 67 370 116 HOH HOH . F 3 HOH A 68 371 117 HOH HOH . F 3 HOH A 69 372 118 HOH HOH . F 3 HOH A 70 373 119 HOH HOH . F 3 HOH A 71 374 120 HOH HOH . F 3 HOH A 72 375 121 HOH HOH . F 3 HOH A 73 376 122 HOH HOH . F 3 HOH A 74 377 123 HOH HOH . F 3 HOH A 75 378 124 HOH HOH . F 3 HOH A 76 379 125 HOH HOH . F 3 HOH A 77 380 126 HOH HOH . F 3 HOH A 78 381 127 HOH HOH . F 3 HOH A 79 382 128 HOH HOH . F 3 HOH A 80 383 129 HOH HOH . F 3 HOH A 81 384 137 HOH HOH . F 3 HOH A 82 385 144 HOH HOH . F 3 HOH A 83 386 151 HOH HOH . F 3 HOH A 84 387 161 HOH HOH . F 3 HOH A 85 388 162 HOH HOH . F 3 HOH A 86 389 177 HOH HOH . F 3 HOH A 87 390 179 HOH HOH . F 3 HOH A 88 391 181 HOH HOH . F 3 HOH A 89 392 182 HOH HOH . F 3 HOH A 90 393 183 HOH HOH . F 3 HOH A 91 394 186 HOH HOH . F 3 HOH A 92 395 189 HOH HOH . F 3 HOH A 93 396 190 HOH HOH . F 3 HOH A 94 397 191 HOH HOH . F 3 HOH A 95 398 195 HOH HOH . F 3 HOH A 96 399 198 HOH HOH . F 3 HOH A 97 400 200 HOH HOH . F 3 HOH A 98 401 202 HOH HOH . F 3 HOH A 99 402 203 HOH HOH . F 3 HOH A 100 403 204 HOH HOH . F 3 HOH A 101 404 207 HOH HOH . F 3 HOH A 102 405 208 HOH HOH . F 3 HOH A 103 406 209 HOH HOH . F 3 HOH A 104 407 210 HOH HOH . F 3 HOH A 105 408 212 HOH HOH . F 3 HOH A 106 409 213 HOH HOH . F 3 HOH A 107 410 215 HOH HOH . F 3 HOH A 108 411 216 HOH HOH . F 3 HOH A 109 412 217 HOH HOH . F 3 HOH A 110 413 220 HOH HOH . F 3 HOH A 111 414 221 HOH HOH . F 3 HOH A 112 415 222 HOH HOH . F 3 HOH A 113 416 223 HOH HOH . F 3 HOH A 114 417 225 HOH HOH . F 3 HOH A 115 418 230 HOH HOH . F 3 HOH A 116 419 231 HOH HOH . F 3 HOH A 117 420 232 HOH HOH . F 3 HOH A 118 421 233 HOH HOH . F 3 HOH A 119 422 234 HOH HOH . G 3 HOH B 1 304 1 HOH HOH . G 3 HOH B 2 305 6 HOH HOH . G 3 HOH B 3 306 7 HOH HOH . G 3 HOH B 4 307 8 HOH HOH . G 3 HOH B 5 308 13 HOH HOH . G 3 HOH B 6 309 14 HOH HOH . G 3 HOH B 7 310 19 HOH HOH . G 3 HOH B 8 311 22 HOH HOH . G 3 HOH B 9 312 24 HOH HOH . G 3 HOH B 10 313 25 HOH HOH . G 3 HOH B 11 314 26 HOH HOH . G 3 HOH B 12 315 28 HOH HOH . G 3 HOH B 13 316 34 HOH HOH . G 3 HOH B 14 317 36 HOH HOH . G 3 HOH B 15 318 37 HOH HOH . G 3 HOH B 16 319 38 HOH HOH . G 3 HOH B 17 320 43 HOH HOH . G 3 HOH B 18 321 44 HOH HOH . G 3 HOH B 19 322 46 HOH HOH . G 3 HOH B 20 323 47 HOH HOH . G 3 HOH B 21 324 48 HOH HOH . G 3 HOH B 22 325 51 HOH HOH . G 3 HOH B 23 326 54 HOH HOH . G 3 HOH B 24 327 55 HOH HOH . G 3 HOH B 25 328 57 HOH HOH . G 3 HOH B 26 329 58 HOH HOH . G 3 HOH B 27 330 61 HOH HOH . G 3 HOH B 28 331 63 HOH HOH . G 3 HOH B 29 332 65 HOH HOH . G 3 HOH B 30 333 68 HOH HOH . G 3 HOH B 31 334 69 HOH HOH . G 3 HOH B 32 335 70 HOH HOH . G 3 HOH B 33 336 72 HOH HOH . G 3 HOH B 34 337 73 HOH HOH . G 3 HOH B 35 338 76 HOH HOH . G 3 HOH B 36 339 79 HOH HOH . G 3 HOH B 37 340 80 HOH HOH . G 3 HOH B 38 341 82 HOH HOH . G 3 HOH B 39 342 83 HOH HOH . G 3 HOH B 40 343 88 HOH HOH . G 3 HOH B 41 344 89 HOH HOH . G 3 HOH B 42 345 90 HOH HOH . G 3 HOH B 43 346 91 HOH HOH . G 3 HOH B 44 347 93 HOH HOH . G 3 HOH B 45 348 95 HOH HOH . G 3 HOH B 46 349 98 HOH HOH . G 3 HOH B 47 350 100 HOH HOH . G 3 HOH B 48 351 102 HOH HOH . G 3 HOH B 49 352 103 HOH HOH . G 3 HOH B 50 353 130 HOH HOH . G 3 HOH B 51 354 131 HOH HOH . G 3 HOH B 52 355 132 HOH HOH . G 3 HOH B 53 356 133 HOH HOH . G 3 HOH B 54 357 134 HOH HOH . G 3 HOH B 55 358 135 HOH HOH . G 3 HOH B 56 359 136 HOH HOH . G 3 HOH B 57 360 138 HOH HOH . G 3 HOH B 58 361 139 HOH HOH . G 3 HOH B 59 362 140 HOH HOH . G 3 HOH B 60 363 141 HOH HOH . G 3 HOH B 61 364 142 HOH HOH . G 3 HOH B 62 365 143 HOH HOH . G 3 HOH B 63 366 145 HOH HOH . G 3 HOH B 64 367 146 HOH HOH . G 3 HOH B 65 368 147 HOH HOH . G 3 HOH B 66 369 148 HOH HOH . G 3 HOH B 67 370 149 HOH HOH . G 3 HOH B 68 371 150 HOH HOH . G 3 HOH B 69 372 152 HOH HOH . G 3 HOH B 70 373 153 HOH HOH . G 3 HOH B 71 374 154 HOH HOH . G 3 HOH B 72 375 155 HOH HOH . G 3 HOH B 73 376 156 HOH HOH . G 3 HOH B 74 377 157 HOH HOH . G 3 HOH B 75 378 158 HOH HOH . G 3 HOH B 76 379 159 HOH HOH . G 3 HOH B 77 380 160 HOH HOH . G 3 HOH B 78 381 163 HOH HOH . G 3 HOH B 79 382 164 HOH HOH . G 3 HOH B 80 383 165 HOH HOH . G 3 HOH B 81 384 166 HOH HOH . G 3 HOH B 82 385 167 HOH HOH . G 3 HOH B 83 386 168 HOH HOH . G 3 HOH B 84 387 169 HOH HOH . G 3 HOH B 85 388 170 HOH HOH . G 3 HOH B 86 389 171 HOH HOH . G 3 HOH B 87 390 172 HOH HOH . G 3 HOH B 88 391 173 HOH HOH . G 3 HOH B 89 392 174 HOH HOH . G 3 HOH B 90 393 175 HOH HOH . G 3 HOH B 91 394 176 HOH HOH . G 3 HOH B 92 395 178 HOH HOH . G 3 HOH B 93 396 180 HOH HOH . G 3 HOH B 94 397 184 HOH HOH . G 3 HOH B 95 398 185 HOH HOH . G 3 HOH B 96 399 187 HOH HOH . G 3 HOH B 97 400 188 HOH HOH . G 3 HOH B 98 401 192 HOH HOH . G 3 HOH B 99 402 193 HOH HOH . G 3 HOH B 100 403 194 HOH HOH . G 3 HOH B 101 404 196 HOH HOH . G 3 HOH B 102 405 197 HOH HOH . G 3 HOH B 103 406 199 HOH HOH . G 3 HOH B 104 407 201 HOH HOH . G 3 HOH B 105 408 205 HOH HOH . G 3 HOH B 106 409 206 HOH HOH . G 3 HOH B 107 410 211 HOH HOH . G 3 HOH B 108 411 214 HOH HOH . G 3 HOH B 109 412 218 HOH HOH . G 3 HOH B 110 413 219 HOH HOH . G 3 HOH B 111 414 224 HOH HOH . G 3 HOH B 112 415 226 HOH HOH . G 3 HOH B 113 416 227 HOH HOH . G 3 HOH B 114 417 228 HOH HOH . G 3 HOH B 115 418 229 HOH HOH . G 3 HOH B 116 419 235 HOH HOH . G 3 HOH B 117 420 236 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CU _atom_site.label_atom_id CU _atom_site.label_comp_id CU _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 2 _atom_site.Cartn_x 17.355 _atom_site.Cartn_y -18.481 _atom_site.Cartn_z 37.556 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 20.28 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CU _atom_site.auth_comp_id CU _atom_site.auth_seq_id 501 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 102 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 19 _model_server_stats.element_count 1 #