data_3NTP
#
_model_server_result.job_id            IjXBLwFu8O4eGOeJpsxHgQ 
_model_server_result.datetime_utc      '2024-11-22 20:22:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ntp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":164}' 
#
_entry.id    3NTP 
#
_exptl.entry_id    3NTP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              452.441 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-2-(acetylamino)-3-[(2S)-2-{[2-(1H-indol-3-yl)ethyl]carbamoyl}pyrrolidin-1-yl]propyl dihydrogen phosphate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3NTP 
_cell.length_a            68.847 
_cell.length_b            68.847 
_cell.length_c            79.782 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3NTP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C20 H29 N4 O6 P' 
_chem_comp.formula_weight    452.441 
_chem_comp.id                RZD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-2-(acetylamino)-3-[(2S)-2-{[2-(1H-indol-3-yl)ethyl]carbamoyl}pyrrolidin-1-yl]propyl dihydrogen phosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P RZD sing 335 n n 
P O2P RZD sing 336 n n 
P O3P RZD doub 337 n n 
P O4P RZD sing 338 n n 
C1 N1 RZD sing 339 n n 
C1 C4 RZD sing 340 n n 
C1 C6 RZD sing 341 n n 
N1 C2 RZD sing 342 n n 
N1 C5 RZD sing 343 n n 
O1 C6 RZD doub 344 n n 
C2 C3 RZD sing 345 n n 
N2 C6 RZD sing 346 n n 
N2 C7 RZD sing 347 n n 
O2 C11 RZD doub 348 n n 
C3 C4 RZD sing 349 n n 
N3 C22 RZD sing 350 n y 
N3 C23 RZD sing 351 n y 
N4 C9 RZD sing 352 n n 
N4 C11 RZD sing 353 n n 
C5 C9 RZD sing 354 n n 
C7 C8 RZD sing 355 n n 
C8 C21 RZD sing 356 n n 
C9 C10 RZD sing 357 n n 
C10 O4P RZD sing 358 n n 
C11 C12 RZD sing 359 n n 
C21 C22 RZD doub 360 n y 
C21 C24 RZD sing 361 n y 
C23 C24 RZD doub 362 n y 
C23 C28 RZD sing 363 n y 
C24 C25 RZD sing 364 n y 
C25 C26 RZD doub 365 n y 
C26 C27 RZD sing 366 n y 
C27 C28 RZD doub 367 n y 
C1 H1 RZD sing 368 n n 
C2 H2 RZD sing 369 n n 
C2 H2A RZD sing 370 n n 
N2 HN2 RZD sing 371 n n 
C3 H3 RZD sing 372 n n 
C3 H3A RZD sing 373 n n 
N3 HN3 RZD sing 374 n n 
C4 H4 RZD sing 375 n n 
C4 H4A RZD sing 376 n n 
N4 HN4 RZD sing 377 n n 
C5 H5 RZD sing 378 n n 
C5 H5A RZD sing 379 n n 
C7 H7 RZD sing 380 n n 
C7 H7A RZD sing 381 n n 
C8 H8 RZD sing 382 n n 
C8 H8A RZD sing 383 n n 
C9 H9 RZD sing 384 n n 
C10 H10 RZD sing 385 n n 
C10 H10A RZD sing 386 n n 
C12 H12 RZD sing 387 n n 
C12 H12A RZD sing 388 n n 
C12 H12B RZD sing 389 n n 
C22 H22 RZD sing 390 n n 
C25 H25 RZD sing 391 n n 
C26 H26 RZD sing 392 n n 
C27 H27 RZD sing 393 n n 
C28 H28 RZD sing 394 n n 
O1P HO1P RZD sing 395 n n 
O2P HO2P RZD sing 396 n n 
#
_atom_sites.entry_id                     3NTP 
_atom_sites.fract_transf_matrix[1][1]    0.014525 
_atom_sites.fract_transf_matrix[1][2]    0.008386 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016772 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012534 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 RZD A 1 164 1 RZD RZD . 
C 3 PE8 A 1 300 300 PE8 PE8 . 
D 4 HOH A 1 165 1 HOH HOH . 
D 4 HOH A 2 166 2 HOH HOH . 
D 4 HOH A 3 167 3 HOH HOH . 
D 4 HOH A 4 168 4 HOH HOH . 
D 4 HOH A 5 169 5 HOH HOH . 
D 4 HOH A 6 170 6 HOH HOH . 
D 4 HOH A 7 171 7 HOH HOH . 
D 4 HOH A 8 172 8 HOH HOH . 
D 4 HOH A 9 173 9 HOH HOH . 
D 4 HOH A 10 174 10 HOH HOH . 
D 4 HOH A 11 175 11 HOH HOH . 
D 4 HOH A 12 176 12 HOH HOH . 
D 4 HOH A 13 177 13 HOH HOH . 
D 4 HOH A 14 178 14 HOH HOH . 
D 4 HOH A 15 179 15 HOH HOH . 
D 4 HOH A 16 180 16 HOH HOH . 
D 4 HOH A 17 181 17 HOH HOH . 
D 4 HOH A 18 182 18 HOH HOH . 
D 4 HOH A 19 183 19 HOH HOH . 
D 4 HOH A 20 184 20 HOH HOH . 
D 4 HOH A 21 185 21 HOH HOH . 
D 4 HOH A 22 186 22 HOH HOH . 
D 4 HOH A 23 187 23 HOH HOH . 
D 4 HOH A 24 188 24 HOH HOH . 
D 4 HOH A 25 189 25 HOH HOH . 
D 4 HOH A 26 190 26 HOH HOH . 
D 4 HOH A 27 191 27 HOH HOH . 
D 4 HOH A 28 192 28 HOH HOH . 
D 4 HOH A 29 193 29 HOH HOH . 
D 4 HOH A 30 194 30 HOH HOH . 
D 4 HOH A 31 195 31 HOH HOH . 
D 4 HOH A 32 196 32 HOH HOH . 
D 4 HOH A 33 197 33 HOH HOH . 
D 4 HOH A 34 198 34 HOH HOH . 
D 4 HOH A 35 199 35 HOH HOH . 
D 4 HOH A 36 200 36 HOH HOH . 
D 4 HOH A 37 201 37 HOH HOH . 
D 4 HOH A 38 202 38 HOH HOH . 
D 4 HOH A 39 203 39 HOH HOH . 
D 4 HOH A 40 204 40 HOH HOH . 
D 4 HOH A 41 205 41 HOH HOH . 
D 4 HOH A 42 206 42 HOH HOH . 
D 4 HOH A 43 207 43 HOH HOH . 
D 4 HOH A 44 208 44 HOH HOH . 
D 4 HOH A 45 209 45 HOH HOH . 
D 4 HOH A 46 210 46 HOH HOH . 
D 4 HOH A 47 211 47 HOH HOH . 
D 4 HOH A 48 212 48 HOH HOH . 
D 4 HOH A 49 213 49 HOH HOH . 
D 4 HOH A 50 214 50 HOH HOH . 
D 4 HOH A 51 215 51 HOH HOH . 
D 4 HOH A 52 216 52 HOH HOH . 
D 4 HOH A 53 217 53 HOH HOH . 
D 4 HOH A 54 218 54 HOH HOH . 
D 4 HOH A 55 219 55 HOH HOH . 
D 4 HOH A 56 220 56 HOH HOH . 
D 4 HOH A 57 221 57 HOH HOH . 
D 4 HOH A 58 222 58 HOH HOH . 
D 4 HOH A 59 223 59 HOH HOH . 
D 4 HOH A 60 224 60 HOH HOH . 
D 4 HOH A 61 225 61 HOH HOH . 
D 4 HOH A 62 226 62 HOH HOH . 
D 4 HOH A 63 227 63 HOH HOH . 
D 4 HOH A 64 228 64 HOH HOH . 
D 4 HOH A 65 229 65 HOH HOH . 
D 4 HOH A 66 230 66 HOH HOH . 
D 4 HOH A 67 231 67 HOH HOH . 
D 4 HOH A 68 232 68 HOH HOH . 
D 4 HOH A 69 233 69 HOH HOH . 
D 4 HOH A 70 234 70 HOH HOH . 
D 4 HOH A 71 235 71 HOH HOH . 
D 4 HOH A 72 236 72 HOH HOH . 
D 4 HOH A 73 237 73 HOH HOH . 
D 4 HOH A 74 238 74 HOH HOH . 
D 4 HOH A 75 239 75 HOH HOH . 
D 4 HOH A 76 240 76 HOH HOH . 
D 4 HOH A 77 241 77 HOH HOH . 
D 4 HOH A 78 242 78 HOH HOH . 
D 4 HOH A 79 243 79 HOH HOH . 
D 4 HOH A 80 244 80 HOH HOH . 
D 4 HOH A 81 245 81 HOH HOH . 
D 4 HOH A 82 246 82 HOH HOH . 
D 4 HOH A 83 247 83 HOH HOH . 
D 4 HOH A 84 248 84 HOH HOH . 
D 4 HOH A 85 249 85 HOH HOH . 
D 4 HOH A 86 250 86 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P RZD . . . B 2 -6.245 46.798 79.989 1 41.05 ? P RZD 164 A 1 
HETATM 2 C C1 RZD . . . B 2 -5.997 40.908 80.076 1 39.15 ? C1 RZD 164 A 1 
HETATM 3 N N1 RZD . . . B 2 -5.485 41.486 81.332 1 37.61 ? N1 RZD 164 A 1 
HETATM 4 O O1 RZD . . . B 2 -7.959 39.782 79.424 1 40.72 ? O1 RZD 164 A 1 
HETATM 5 C C2 RZD . . . B 2 -4.572 40.528 81.973 1 36.94 ? C2 RZD 164 A 1 
HETATM 6 N N2 RZD . . . B 2 -8.082 41.068 81.265 1 42.33 ? N2 RZD 164 A 1 
HETATM 7 O O2 RZD . . . B 2 -5.81 43.318 85.415 1 48.89 ? O2 RZD 164 A 1 
HETATM 8 C C3 RZD . . . B 2 -4.325 39.385 80.997 1 31.84 ? C3 RZD 164 A 1 
HETATM 9 N N3 RZD . . . B 2 -11.379 38.053 84.386 1 56.35 ? N3 RZD 164 A 1 
HETATM 10 C C4 RZD . . . B 2 -5.227 39.624 79.795 1 34.72 ? C4 RZD 164 A 1 
HETATM 11 N N4 RZD . . . B 2 -5.152 43.547 83.281 1 45.12 ? N4 RZD 164 A 1 
HETATM 12 C C5 RZD . . . B 2 -4.795 42.758 81.081 1 36.6 ? C5 RZD 164 A 1 
HETATM 13 C C6 RZD . . . B 2 -7.438 40.539 80.23 1 39.8 ? C6 RZD 164 A 1 
HETATM 14 C C7 RZD . . . B 2 -9.477 40.848 81.632 1 49.19 ? C7 RZD 164 A 1 
HETATM 15 C C8 RZD . . . B 2 -9.473 40.997 83.152 1 52.37 ? C8 RZD 164 A 1 
HETATM 16 C C9 RZD . . . B 2 -5.482 43.857 81.892 1 42.03 ? C9 RZD 164 A 1 
HETATM 17 C C10 RZD . . . B 2 -4.843 45.216 81.619 1 37.84 ? C10 RZD 164 A 1 
HETATM 18 C C11 RZD . . . B 2 -6.071 43.582 84.246 1 48.53 ? C11 RZD 164 A 1 
HETATM 19 C C12 RZD . . . B 2 -7.45 43.975 83.808 1 48.68 ? C12 RZD 164 A 1 
HETATM 20 O O1P RZD . . . B 2 -6.351 46.827 78.483 1 38.73 ? O1P RZD 164 A 1 
HETATM 21 C C21 RZD . . . B 2 -10.05 39.771 83.823 1 55.68 ? C21 RZD 164 A 1 
HETATM 22 C C22 RZD . . . B 2 -11.247 39.134 83.547 1 55.83 ? C22 RZD 164 A 1 
HETATM 23 C C23 RZD . . . B 2 -10.29 37.969 85.196 1 55.21 ? C23 RZD 164 A 1 
HETATM 24 C C24 RZD . . . B 2 -9.416 38.998 84.908 1 54.73 ? C24 RZD 164 A 1 
HETATM 25 C C25 RZD . . . B 2 -8.201 39.176 85.578 1 49.46 ? C25 RZD 164 A 1 
HETATM 26 C C26 RZD . . . B 2 -7.911 38.23 86.582 1 50.02 ? C26 RZD 164 A 1 
HETATM 27 C C27 RZD . . . B 2 -8.802 37.186 86.871 1 52.69 ? C27 RZD 164 A 1 
HETATM 28 C C28 RZD . . . B 2 -10.008 37.037 86.183 1 50.6 ? C28 RZD 164 A 1 
HETATM 29 O O2P RZD . . . B 2 -5.618 48.043 80.572 1 37.25 ? O2P RZD 164 A 1 
HETATM 30 O O3P RZD . . . B 2 -7.483 46.292 80.685 1 42.08 ? O3P RZD 164 A 1 
HETATM 31 O O4P RZD . . . B 2 -5.158 45.64 80.29 1 42.13 ? O4P RZD 164 A 1 
#
_model_server_stats.io_time_ms              62 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           31 
#