data_3NTQ # _model_server_result.job_id EWcsarEgBfGyBIYIFU0jEQ _model_server_result.datetime_utc '2024-10-14 09:22:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ntq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":400}' # _entry.id 3NTQ # _exptl.entry_id 3NTQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3NTQ _cell.length_a 184.387 _cell.length_b 184.387 _cell.length_c 184.387 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NTQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 199 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA hexameric 6 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1,2 A,B,C,D,E,F 2 1,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 15_455 -x-1/2,y,-z -1 0 0 0 1 0 0 0 -1 -92.1935 0 0 3 'crystal symmetry operation' 6_445 z-1/2,-x-1/2,-y 0 0 1 -1 0 0 0 -1 0 -92.1935 -92.1935 0 4 'crystal symmetry operation' 12_455 -y-1/2,-z,x+1/2 0 -1 0 0 0 -1 1 0 0 -92.1935 0 92.1935 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 3NTQ _atom_sites.fract_transf_matrix[1][1] 0.005423 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005423 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005423 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 400 400 NAD NAD . D 2 NAD B 1 400 400 NAD NAD . E 3 HOH A 1 345 3 HOH HOH . E 3 HOH A 2 346 4 HOH HOH . E 3 HOH A 3 347 5 HOH HOH . E 3 HOH A 4 348 6 HOH HOH . E 3 HOH A 5 349 7 HOH HOH . E 3 HOH A 6 350 8 HOH HOH . E 3 HOH A 7 351 9 HOH HOH . E 3 HOH A 8 352 12 HOH HOH . E 3 HOH A 9 353 13 HOH HOH . E 3 HOH A 10 354 14 HOH HOH . E 3 HOH A 11 355 16 HOH HOH . E 3 HOH A 12 356 17 HOH HOH . E 3 HOH A 13 357 18 HOH HOH . E 3 HOH A 14 358 19 HOH HOH . E 3 HOH A 15 359 21 HOH HOH . E 3 HOH A 16 360 23 HOH HOH . E 3 HOH A 17 361 25 HOH HOH . E 3 HOH A 18 362 27 HOH HOH . E 3 HOH A 19 363 28 HOH HOH . E 3 HOH A 20 364 29 HOH HOH . E 3 HOH A 21 365 30 HOH HOH . E 3 HOH A 22 366 31 HOH HOH . E 3 HOH A 23 367 39 HOH HOH . E 3 HOH A 24 368 40 HOH HOH . E 3 HOH A 25 369 41 HOH HOH . E 3 HOH A 26 370 42 HOH HOH . E 3 HOH A 27 371 43 HOH HOH . E 3 HOH A 28 372 45 HOH HOH . E 3 HOH A 29 373 46 HOH HOH . E 3 HOH A 30 374 47 HOH HOH . E 3 HOH A 31 375 48 HOH HOH . E 3 HOH A 32 376 49 HOH HOH . F 3 HOH B 1 345 2 HOH HOH . F 3 HOH B 2 346 10 HOH HOH . F 3 HOH B 3 347 11 HOH HOH . F 3 HOH B 4 348 15 HOH HOH . F 3 HOH B 5 349 20 HOH HOH . F 3 HOH B 6 350 22 HOH HOH . F 3 HOH B 7 351 24 HOH HOH . F 3 HOH B 8 352 26 HOH HOH . F 3 HOH B 9 353 32 HOH HOH . F 3 HOH B 10 354 35 HOH HOH . F 3 HOH B 11 355 36 HOH HOH . F 3 HOH B 12 356 37 HOH HOH . F 3 HOH B 13 357 38 HOH HOH . F 3 HOH B 14 358 44 HOH HOH . F 3 HOH B 15 359 50 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . D 2 -31.04 47.262 19.48 1 137.95 ? PA NAD 400 B 1 HETATM 2 O O1A NAD . . . D 2 -30.549 47.29 18.066 1 107.58 ? O1A NAD 400 B 1 HETATM 3 O O2A NAD . . . D 2 -29.979 47.067 20.492 1 125.88 ? O2A NAD 400 B 1 HETATM 4 O O5B NAD . . . D 2 -31.832 48.632 19.758 1 128.99 ? O5B NAD 400 B 1 HETATM 5 C C5B NAD . . . D 2 -31.613 49.414 20.911 1 113.87 ? C5B NAD 400 B 1 HETATM 6 C C4B NAD . . . D 2 -31.225 50.81 20.432 1 114.44 ? C4B NAD 400 B 1 HETATM 7 O O4B NAD . . . D 2 -32.014 51.798 21.061 1 127.54 ? O4B NAD 400 B 1 HETATM 8 C C3B NAD . . . D 2 -29.782 51.161 20.747 1 127.52 ? C3B NAD 400 B 1 HETATM 9 O O3B NAD . . . D 2 -29.282 51.874 19.638 1 119.01 ? O3B NAD 400 B 1 HETATM 10 C C2B NAD . . . D 2 -29.854 52.028 21.998 1 130.64 ? C2B NAD 400 B 1 HETATM 11 O O2B NAD . . . D 2 -28.809 52.976 22.018 1 125.69 ? O2B NAD 400 B 1 HETATM 12 C C1B NAD . . . D 2 -31.222 52.69 21.847 1 133.32 ? C1B NAD 400 B 1 HETATM 13 N N9A NAD . . . D 2 -31.978 53.053 23.078 1 137.8 ? N9A NAD 400 B 1 HETATM 14 C C8A NAD . . . D 2 -32.173 52.303 24.221 1 129 ? C8A NAD 400 B 1 HETATM 15 N N7A NAD . . . D 2 -33.038 52.965 25.035 1 129.12 ? N7A NAD 400 B 1 HETATM 16 C C5A NAD . . . D 2 -33.412 54.131 24.433 1 140.82 ? C5A NAD 400 B 1 HETATM 17 C C6A NAD . . . D 2 -34.266 55.189 24.804 1 138.27 ? C6A NAD 400 B 1 HETATM 18 N N6A NAD . . . D 2 -34.926 55.163 25.962 1 138.96 ? N6A NAD 400 B 1 HETATM 19 N N1A NAD . . . D 2 -34.45 56.275 23.958 1 121.18 ? N1A NAD 400 B 1 HETATM 20 C C2A NAD . . . D 2 -33.793 56.319 22.738 1 125.33 ? C2A NAD 400 B 1 HETATM 21 N N3A NAD . . . D 2 -32.951 55.278 22.375 1 128.37 ? N3A NAD 400 B 1 HETATM 22 C C4A NAD . . . D 2 -32.754 54.199 23.198 1 137.77 ? C4A NAD 400 B 1 HETATM 23 O O3 NAD . . . D 2 -32.139 46.099 19.721 1 135.56 ? O3 NAD 400 B 1 HETATM 24 P PN NAD . . . D 2 -32.92 45.38 18.505 1 142.46 ? PN NAD 400 B 1 HETATM 25 O O1N NAD . . . D 2 -32.765 46.255 17.304 1 105.62 ? O1N NAD 400 B 1 HETATM 26 O O2N NAD . . . D 2 -32.516 43.952 18.492 1 120.54 ? O2N NAD 400 B 1 HETATM 27 O O5D NAD . . . D 2 -34.445 45.393 19.04 1 134.92 ? O5D NAD 400 B 1 HETATM 28 C C5D NAD . . . D 2 -35.063 46.512 19.648 1 112.75 ? C5D NAD 400 B 1 HETATM 29 C C4D NAD . . . D 2 -36.428 46.11 20.223 1 119.16 ? C4D NAD 400 B 1 HETATM 30 O O4D NAD . . . D 2 -37.204 45.431 19.251 1 128 ? O4D NAD 400 B 1 HETATM 31 C C3D NAD . . . D 2 -36.356 45.181 21.433 1 129.08 ? C3D NAD 400 B 1 HETATM 32 O O3D NAD . . . D 2 -37.274 45.606 22.426 1 107.57 ? O3D NAD 400 B 1 HETATM 33 C C2D NAD . . . D 2 -36.758 43.819 20.892 1 125.48 ? C2D NAD 400 B 1 HETATM 34 O O2D NAD . . . D 2 -37.408 43.043 21.874 1 121.39 ? O2D NAD 400 B 1 HETATM 35 C C1D NAD . . . D 2 -37.697 44.192 19.748 1 127.55 ? C1D NAD 400 B 1 HETATM 36 N N1N NAD . . . D 2 -37.779 43.186 18.661 1 136.98 ? N1N NAD 400 B 1 HETATM 37 C C2N NAD . . . D 2 -38.995 42.6 18.352 1 120.25 ? C2N NAD 400 B 1 HETATM 38 C C3N NAD . . . D 2 -39.07 41.661 17.311 1 128.56 ? C3N NAD 400 B 1 HETATM 39 C C7N NAD . . . D 2 -40.342 40.958 16.89 1 125.88 ? C7N NAD 400 B 1 HETATM 40 O O7N NAD . . . D 2 -40.189 39.773 16.146 1 124.05 ? O7N NAD 400 B 1 HETATM 41 N N7N NAD . . . D 2 -41.561 41.48 17.082 1 108.3 ? N7N NAD 400 B 1 HETATM 42 C C4N NAD . . . D 2 -37.908 41.337 16.606 1 134.64 ? C4N NAD 400 B 1 HETATM 43 C C5N NAD . . . D 2 -36.684 41.932 16.921 1 131.66 ? C5N NAD 400 B 1 HETATM 44 C C6N NAD . . . D 2 -36.637 42.86 17.956 1 134.45 ? C6N NAD 400 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 44 #