data_3NTR # _model_server_result.job_id GWpViVs_66qCgRm6T5Xbhw _model_server_result.datetime_utc '2024-10-14 07:26:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ntr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":801}' # _entry.id 3NTR # _exptl.entry_id 3NTR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXANE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3NTR _cell.length_a 183.695 _cell.length_b 183.695 _cell.length_c 183.695 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NTR _symmetry.cell_setting ? _symmetry.Int_Tables_number 199 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA hexameric 6 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1,2 A,B,C,D,E,F,G,H 2 1,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 16_554 x,-y,-z-1/2 1 0 0 0 -1 0 0 0 -1 0 0 -91.8475 3 'crystal symmetry operation' 6_555 z+1/2,-x+1/2,-y 0 0 1 -1 0 0 0 -1 0 91.8475 91.8475 0 4 'crystal symmetry operation' 12_554 -y+1/2,-z,x-1/2 0 -1 0 0 0 -1 1 0 0 91.8475 0 -91.8475 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id INS _chem_comp.mon_nstd_flag . _chem_comp.name 1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms MYO-INOSITOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 INS sing 173 n n C1 C6 INS sing 174 n n C1 O1 INS sing 175 n n C1 H1 INS sing 176 n n C2 C3 INS sing 177 n n C2 O2 INS sing 178 n n C2 H2 INS sing 179 n n C3 C4 INS sing 180 n n C3 O3 INS sing 181 n n C3 H3 INS sing 182 n n C4 C5 INS sing 183 n n C4 O4 INS sing 184 n n C4 H4 INS sing 185 n n C5 C6 INS sing 186 n n C5 O5 INS sing 187 n n C5 H5 INS sing 188 n n C6 O6 INS sing 189 n n C6 H6 INS sing 190 n n O1 HO1 INS sing 191 n n O2 HO2 INS sing 192 n n O3 HO3 INS sing 193 n n O4 HO4 INS sing 194 n n O5 HO5 INS sing 195 n n O6 HO6 INS sing 196 n n # _atom_sites.entry_id 3NTR _atom_sites.fract_transf_matrix[1][1] 0.005444 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005444 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005444 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 400 400 NAD NAD . D 3 INS A 1 801 801 INS INS . E 2 NAD B 1 400 400 NAD NAD . F 3 INS B 1 802 802 INS INS . G 4 HOH A 1 345 3 HOH HOH . G 4 HOH A 2 346 5 HOH HOH . G 4 HOH A 3 347 7 HOH HOH . G 4 HOH A 4 348 9 HOH HOH . G 4 HOH A 5 349 10 HOH HOH . G 4 HOH A 6 350 11 HOH HOH . G 4 HOH A 7 351 12 HOH HOH . G 4 HOH A 8 352 13 HOH HOH . G 4 HOH A 9 353 18 HOH HOH . G 4 HOH A 10 354 19 HOH HOH . G 4 HOH A 11 355 20 HOH HOH . G 4 HOH A 12 356 21 HOH HOH . G 4 HOH A 13 357 23 HOH HOH . G 4 HOH A 14 358 25 HOH HOH . G 4 HOH A 15 359 26 HOH HOH . G 4 HOH A 16 360 27 HOH HOH . G 4 HOH A 17 361 29 HOH HOH . G 4 HOH A 18 362 31 HOH HOH . G 4 HOH A 19 363 33 HOH HOH . G 4 HOH A 20 364 35 HOH HOH . G 4 HOH A 21 365 36 HOH HOH . G 4 HOH A 22 366 38 HOH HOH . G 4 HOH A 23 367 39 HOH HOH . G 4 HOH A 24 368 42 HOH HOH . G 4 HOH A 25 369 43 HOH HOH . G 4 HOH A 26 370 44 HOH HOH . G 4 HOH A 27 371 46 HOH HOH . G 4 HOH A 28 372 47 HOH HOH . G 4 HOH A 29 373 48 HOH HOH . G 4 HOH A 30 374 56 HOH HOH . G 4 HOH A 31 375 57 HOH HOH . H 4 HOH B 1 345 1 HOH HOH . H 4 HOH B 2 346 2 HOH HOH . H 4 HOH B 3 347 4 HOH HOH . H 4 HOH B 4 348 6 HOH HOH . H 4 HOH B 5 349 8 HOH HOH . H 4 HOH B 6 350 14 HOH HOH . H 4 HOH B 7 351 15 HOH HOH . H 4 HOH B 8 352 16 HOH HOH . H 4 HOH B 9 353 17 HOH HOH . H 4 HOH B 10 354 24 HOH HOH . H 4 HOH B 11 355 28 HOH HOH . H 4 HOH B 12 356 30 HOH HOH . H 4 HOH B 13 357 32 HOH HOH . H 4 HOH B 14 358 34 HOH HOH . H 4 HOH B 15 359 37 HOH HOH . H 4 HOH B 16 360 40 HOH HOH . H 4 HOH B 17 361 41 HOH HOH . H 4 HOH B 18 362 45 HOH HOH . H 4 HOH B 19 363 49 HOH HOH . H 4 HOH B 20 364 50 HOH HOH . H 4 HOH B 21 365 51 HOH HOH . H 4 HOH B 22 366 52 HOH HOH . H 4 HOH B 23 367 53 HOH HOH . H 4 HOH B 24 368 54 HOH HOH . H 4 HOH B 25 369 55 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 INS . . . D 3 -1.287 17.932 -55.448 1 156.33 ? C1 INS 801 A 1 HETATM 2 C C2 INS . . . D 3 0.182 17.8 -55.934 1 138.39 ? C2 INS 801 A 1 HETATM 3 C C3 INS . . . D 3 0.315 17.59 -57.451 1 127.49 ? C3 INS 801 A 1 HETATM 4 C C4 INS . . . D 3 -0.612 18.513 -58.259 1 142.95 ? C4 INS 801 A 1 HETATM 5 C C5 INS . . . D 3 -2.049 18.574 -57.729 1 154.11 ? C5 INS 801 A 1 HETATM 6 C C6 INS . . . D 3 -2.104 18.958 -56.258 1 157.19 ? C6 INS 801 A 1 HETATM 7 O O1 INS . . . D 3 -1.405 18.112 -54.012 1 123.08 ? O1 INS 801 A 1 HETATM 8 O O2 INS . . . D 3 0.963 18.961 -55.589 1 111.12 ? O2 INS 801 A 1 HETATM 9 O O3 INS . . . D 3 1.681 17.797 -57.836 1 79.14 ? O3 INS 801 A 1 HETATM 10 O O4 INS . . . D 3 -0.641 18.111 -59.64 1 114.57 ? O4 INS 801 A 1 HETATM 11 O O5 INS . . . D 3 -2.822 19.504 -58.485 1 133.26 ? O5 INS 801 A 1 HETATM 12 O O6 INS . . . D 3 -3.478 19.071 -55.827 1 138.09 ? O6 INS 801 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 12 #