data_3NTZ # _model_server_result.job_id HSV6lnItXy9mgYDNlPmsIQ _model_server_result.datetime_utc '2024-11-23 03:33:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ntz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":187}' # _entry.id 3NTZ # _exptl.entry_id 3NTZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 495.508 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-[(4-{[(2-amino-4-oxo-3,4-dihydro[1]benzothieno[2,3-d]pyrimidin-5-yl)methyl]amino}phenyl)carbonyl]-L-glutamic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3NTZ _cell.length_a 84.287 _cell.length_b 84.287 _cell.length_c 77.792 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NTZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H21 N5 O6 S' _chem_comp.formula_weight 495.508 _chem_comp.id 3TZ _chem_comp.mon_nstd_flag . _chem_comp.name 'N-[(4-{[(2-amino-4-oxo-3,4-dihydro[1]benzothieno[2,3-d]pyrimidin-5-yl)methyl]amino}phenyl)carbonyl]-L-glutamic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OXT C 3TZ doub 1 n n C O 3TZ sing 2 n n C CA 3TZ sing 3 n n CA N 3TZ sing 4 n n N CAY 3TZ sing 5 n n N HN 3TZ sing 6 n n O HO 3TZ sing 7 n n C2 N1 3TZ sing 8 n n N1 C6 3TZ sing 9 n n N1 HN1 3TZ sing 10 n n NAA C2 3TZ sing 11 n n C2 N3 3TZ doub 12 n n N3 C4 3TZ sing 13 n n C4 C5 3TZ doub 14 n y C4 SAV 3TZ sing 15 n y C6 C5 3TZ sing 16 n n C5 CBG 3TZ sing 17 n y O6 C6 3TZ doub 18 n n CB CA 3TZ sing 19 n n CA HA 3TZ sing 20 n n CG CB 3TZ sing 21 n n CB HB 3TZ sing 22 n n CB HBA 3TZ sing 23 n n OE2 CD 3TZ doub 24 n n CD CG 3TZ sing 25 n n CD OE1 3TZ sing 26 n n CG HG 3TZ sing 27 n n CG HGA 3TZ sing 28 n n NAA HNAA 3TZ sing 29 n n NAA HNAB 3TZ sing 30 n n CAY OAD 3TZ doub 31 n n CAN CAH 3TZ doub 32 n y CAI CAH 3TZ sing 33 n y CAH HAH 3TZ sing 34 n n CBD CAI 3TZ doub 35 n y CAI HAI 3TZ sing 36 n n CAJ CAL 3TZ doub 37 n y CAJ CBA 3TZ sing 38 n y CAJ HAJ 3TZ sing 39 n n CBA CAK 3TZ doub 40 n y CAK CAM 3TZ sing 41 n y CAK HAK 3TZ sing 42 n n CAL CBB 3TZ sing 43 n y CAL HAL 3TZ sing 44 n n CBB CAM 3TZ doub 45 n y CAM HAM 3TZ sing 46 n n CBE CAN 3TZ sing 47 n y CAN HAN 3TZ sing 48 n n NAT CAQ 3TZ sing 49 n n CAQ CBD 3TZ sing 50 n n CAQ HAQ 3TZ sing 51 n n CAQ HAQA 3TZ sing 52 n n NAT CBA 3TZ sing 53 n n NAT HNAT 3TZ sing 54 n n SAV CBE 3TZ sing 55 n y CBB CAY 3TZ sing 56 n n CBG CBD 3TZ sing 57 n y CBG CBE 3TZ doub 58 n y OE1 HOE1 3TZ sing 59 n n # _atom_sites.entry_id 3NTZ _atom_sites.fract_transf_matrix[1][1] 0.011864 _atom_sites.fract_transf_matrix[1][2] 0.00685 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0137 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012855 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 3TZ A 1 187 187 3TZ 3TZ . C 3 NDP A 1 188 188 NDP NDP . D 4 SO4 A 1 189 189 SO4 SO4 . E 4 SO4 A 1 190 190 SO4 SO4 . F 4 SO4 A 1 191 191 SO4 SO4 . G 4 SO4 A 1 192 192 SO4 SO4 . H 4 SO4 A 1 193 193 SO4 SO4 . I 5 HOH A 1 194 194 HOH HOH . I 5 HOH A 2 195 195 HOH HOH . I 5 HOH A 3 196 196 HOH HOH . I 5 HOH A 4 197 197 HOH HOH . I 5 HOH A 5 198 198 HOH HOH . I 5 HOH A 6 199 199 HOH HOH . I 5 HOH A 7 200 200 HOH HOH . I 5 HOH A 8 201 201 HOH HOH . I 5 HOH A 9 202 202 HOH HOH . I 5 HOH A 10 203 203 HOH HOH . I 5 HOH A 11 204 204 HOH HOH . I 5 HOH A 12 205 205 HOH HOH . I 5 HOH A 13 206 206 HOH HOH . I 5 HOH A 14 207 207 HOH HOH . I 5 HOH A 15 208 208 HOH HOH . I 5 HOH A 16 209 209 HOH HOH . I 5 HOH A 17 210 210 HOH HOH . I 5 HOH A 18 211 211 HOH HOH . I 5 HOH A 19 212 212 HOH HOH . I 5 HOH A 20 213 213 HOH HOH . I 5 HOH A 21 214 214 HOH HOH . I 5 HOH A 22 215 215 HOH HOH . I 5 HOH A 23 216 216 HOH HOH . I 5 HOH A 24 217 217 HOH HOH . I 5 HOH A 25 218 218 HOH HOH . I 5 HOH A 26 219 219 HOH HOH . I 5 HOH A 27 220 220 HOH HOH . I 5 HOH A 28 221 221 HOH HOH . I 5 HOH A 29 222 222 HOH HOH . I 5 HOH A 30 223 223 HOH HOH . I 5 HOH A 31 224 224 HOH HOH . I 5 HOH A 32 225 225 HOH HOH . I 5 HOH A 33 226 226 HOH HOH . I 5 HOH A 34 227 227 HOH HOH . I 5 HOH A 35 228 228 HOH HOH . I 5 HOH A 36 229 229 HOH HOH . I 5 HOH A 37 230 230 HOH HOH . I 5 HOH A 38 231 231 HOH HOH . I 5 HOH A 39 232 232 HOH HOH . I 5 HOH A 40 233 233 HOH HOH . I 5 HOH A 41 234 234 HOH HOH . I 5 HOH A 42 235 235 HOH HOH . I 5 HOH A 43 236 236 HOH HOH . I 5 HOH A 44 237 237 HOH HOH . I 5 HOH A 45 238 238 HOH HOH . I 5 HOH A 46 239 239 HOH HOH . I 5 HOH A 47 240 240 HOH HOH . I 5 HOH A 48 241 241 HOH HOH . I 5 HOH A 49 242 242 HOH HOH . I 5 HOH A 50 243 243 HOH HOH . I 5 HOH A 51 244 244 HOH HOH . I 5 HOH A 52 245 245 HOH HOH . I 5 HOH A 53 246 246 HOH HOH . I 5 HOH A 54 247 247 HOH HOH . I 5 HOH A 55 248 248 HOH HOH . I 5 HOH A 56 249 249 HOH HOH . I 5 HOH A 57 250 250 HOH HOH . I 5 HOH A 58 251 251 HOH HOH . I 5 HOH A 59 252 252 HOH HOH . I 5 HOH A 60 253 253 HOH HOH . I 5 HOH A 61 254 254 HOH HOH . I 5 HOH A 62 255 255 HOH HOH . I 5 HOH A 63 256 256 HOH HOH . I 5 HOH A 64 257 257 HOH HOH . I 5 HOH A 65 258 258 HOH HOH . I 5 HOH A 66 259 259 HOH HOH . I 5 HOH A 67 260 260 HOH HOH . I 5 HOH A 68 261 261 HOH HOH . I 5 HOH A 69 262 262 HOH HOH . I 5 HOH A 70 263 263 HOH HOH . I 5 HOH A 71 264 264 HOH HOH . I 5 HOH A 72 265 265 HOH HOH . I 5 HOH A 73 266 266 HOH HOH . I 5 HOH A 74 267 267 HOH HOH . I 5 HOH A 75 268 268 HOH HOH . I 5 HOH A 76 269 269 HOH HOH . I 5 HOH A 77 270 270 HOH HOH . I 5 HOH A 78 271 271 HOH HOH . I 5 HOH A 79 272 272 HOH HOH . I 5 HOH A 80 273 273 HOH HOH . I 5 HOH A 81 274 274 HOH HOH . I 5 HOH A 82 275 275 HOH HOH . I 5 HOH A 83 276 276 HOH HOH . I 5 HOH A 84 277 277 HOH HOH . I 5 HOH A 85 278 278 HOH HOH . I 5 HOH A 86 279 279 HOH HOH . I 5 HOH A 87 280 280 HOH HOH . I 5 HOH A 88 281 281 HOH HOH . I 5 HOH A 89 282 282 HOH HOH . I 5 HOH A 90 283 283 HOH HOH . I 5 HOH A 91 284 284 HOH HOH . I 5 HOH A 92 285 285 HOH HOH . I 5 HOH A 93 286 286 HOH HOH . I 5 HOH A 94 287 287 HOH HOH . I 5 HOH A 95 288 288 HOH HOH . I 5 HOH A 96 289 289 HOH HOH . I 5 HOH A 97 290 290 HOH HOH . I 5 HOH A 98 291 291 HOH HOH . I 5 HOH A 99 292 292 HOH HOH . I 5 HOH A 100 293 293 HOH HOH . I 5 HOH A 101 294 294 HOH HOH . I 5 HOH A 102 295 295 HOH HOH . I 5 HOH A 103 296 296 HOH HOH . I 5 HOH A 104 297 297 HOH HOH . I 5 HOH A 105 298 298 HOH HOH . I 5 HOH A 106 299 299 HOH HOH . I 5 HOH A 107 300 300 HOH HOH . I 5 HOH A 108 301 301 HOH HOH . I 5 HOH A 109 302 302 HOH HOH . I 5 HOH A 110 303 303 HOH HOH . I 5 HOH A 111 304 304 HOH HOH . I 5 HOH A 112 305 305 HOH HOH . I 5 HOH A 113 306 306 HOH HOH . I 5 HOH A 114 307 307 HOH HOH . I 5 HOH A 115 308 308 HOH HOH . I 5 HOH A 116 309 309 HOH HOH . I 5 HOH A 117 310 310 HOH HOH . I 5 HOH A 118 311 311 HOH HOH . I 5 HOH A 119 312 312 HOH HOH . I 5 HOH A 120 313 313 HOH HOH . I 5 HOH A 121 314 314 HOH HOH . I 5 HOH A 122 315 315 HOH HOH . I 5 HOH A 123 316 316 HOH HOH . I 5 HOH A 124 317 317 HOH HOH . I 5 HOH A 125 318 318 HOH HOH . I 5 HOH A 126 319 319 HOH HOH . I 5 HOH A 127 320 320 HOH HOH . I 5 HOH A 128 321 321 HOH HOH . I 5 HOH A 129 322 322 HOH HOH . I 5 HOH A 130 323 323 HOH HOH . I 5 HOH A 131 324 324 HOH HOH . I 5 HOH A 132 325 325 HOH HOH . I 5 HOH A 133 326 326 HOH HOH . I 5 HOH A 134 327 327 HOH HOH . I 5 HOH A 135 328 328 HOH HOH . I 5 HOH A 136 329 329 HOH HOH . I 5 HOH A 137 330 330 HOH HOH . I 5 HOH A 138 331 331 HOH HOH . I 5 HOH A 139 332 332 HOH HOH . I 5 HOH A 140 333 333 HOH HOH . I 5 HOH A 141 334 334 HOH HOH . I 5 HOH A 142 335 335 HOH HOH . I 5 HOH A 143 336 336 HOH HOH . I 5 HOH A 144 337 337 HOH HOH . I 5 HOH A 145 338 338 HOH HOH . I 5 HOH A 146 339 339 HOH HOH . I 5 HOH A 147 340 340 HOH HOH . I 5 HOH A 148 341 341 HOH HOH . I 5 HOH A 149 342 342 HOH HOH . I 5 HOH A 150 343 343 HOH HOH . I 5 HOH A 151 344 344 HOH HOH . I 5 HOH A 152 345 345 HOH HOH . I 5 HOH A 153 346 346 HOH HOH . I 5 HOH A 154 347 347 HOH HOH . I 5 HOH A 155 348 348 HOH HOH . I 5 HOH A 156 349 349 HOH HOH . I 5 HOH A 157 350 350 HOH HOH . I 5 HOH A 158 351 351 HOH HOH . I 5 HOH A 159 352 352 HOH HOH . I 5 HOH A 160 353 353 HOH HOH . I 5 HOH A 161 354 354 HOH HOH . I 5 HOH A 162 355 355 HOH HOH . I 5 HOH A 163 356 356 HOH HOH . I 5 HOH A 164 357 357 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C 3TZ . . . B 2 4.075 12.355 25.223 1 35.58 ? C 3TZ 187 A 1 HETATM 2 N N 3TZ . . . B 2 1.696 11.836 25.442 1 40.54 ? N 3TZ 187 A 1 HETATM 3 O O 3TZ . . . B 2 5.202 11.813 25.232 1 33.14 ? O 3TZ 187 A 1 HETATM 4 N N1 3TZ . . . B 2 -3.584 17.685 22.56 1 13.51 ? N1 3TZ 187 A 1 HETATM 5 C C2 3TZ . . . B 2 -3.14 18.939 22.431 1 11.8 ? C2 3TZ 187 A 1 HETATM 6 N N3 3TZ . . . B 2 -2.763 19.717 23.437 1 11.84 ? N3 3TZ 187 A 1 HETATM 7 C C4 3TZ . . . B 2 -2.763 19.118 24.671 1 13.23 ? C4 3TZ 187 A 1 HETATM 8 C C5 3TZ . . . B 2 -3.18 17.781 24.918 1 15.32 ? C5 3TZ 187 A 1 HETATM 9 C C6 3TZ . . . B 2 -3.679 17.145 23.785 1 15.83 ? C6 3TZ 187 A 1 HETATM 10 O O6 3TZ . . . B 2 -4.191 15.926 23.69 1 19.66 ? O6 3TZ 187 A 1 HETATM 11 C CA 3TZ . . . B 2 3.015 11.233 25.256 1 38.9 ? CA 3TZ 187 A 1 HETATM 12 C CB 3TZ . . . B 2 3.172 10.552 23.884 1 41.37 ? CB 3TZ 187 A 1 HETATM 13 C CD 3TZ . . . B 2 2.142 8.638 22.8 1 56.68 ? CD 3TZ 187 A 1 HETATM 14 C CG 3TZ . . . B 2 1.911 10.121 23.106 1 47.86 ? CG 3TZ 187 A 1 HETATM 15 N NAA 3TZ . . . B 2 -3.054 19.519 21.176 1 12.89 ? NAA 3TZ 187 A 1 HETATM 16 O OAD 3TZ . . . B 2 1.039 10.768 27.36 1 43.83 ? OAD 3TZ 187 A 1 HETATM 17 C CAH 3TZ . . . B 2 -2.528 17.354 29.07 1 18.14 ? CAH 3TZ 187 A 1 HETATM 18 C CAI 3TZ . . . B 2 -3.084 16.286 28.423 1 18.27 ? CAI 3TZ 187 A 1 HETATM 19 C CAJ 3TZ . . . B 2 -1.524 13.666 24.654 1 39.13 ? CAJ 3TZ 187 A 1 HETATM 20 C CAK 3TZ . . . B 2 -2.391 13.219 26.963 1 40.69 ? CAK 3TZ 187 A 1 HETATM 21 C CAL 3TZ . . . B 2 -0.434 12.923 24.935 1 35.08 ? CAL 3TZ 187 A 1 HETATM 22 C CAM 3TZ . . . B 2 -1.266 12.487 27.237 1 39.16 ? CAM 3TZ 187 A 1 HETATM 23 C CAN 3TZ . . . B 2 -2.193 18.543 28.406 1 12.96 ? CAN 3TZ 187 A 1 HETATM 24 C CAQ 3TZ . . . B 2 -4.055 15.003 26.619 1 27.85 ? CAQ 3TZ 187 A 1 HETATM 25 N NAT 3TZ . . . B 2 -3.533 14.492 25.434 1 39.23 ? NAT 3TZ 187 A 1 HETATM 26 S SAV 3TZ . . . B 2 -2.329 19.939 26.038 1 12.72 ? SAV 3TZ 187 A 1 HETATM 27 C CAY 3TZ . . . B 2 0.894 11.589 26.437 1 40.43 ? CAY 3TZ 187 A 1 HETATM 28 C CBA 3TZ . . . B 2 -2.472 13.798 25.686 1 39.37 ? CBA 3TZ 187 A 1 HETATM 29 C CBB 3TZ . . . B 2 -0.329 12.371 26.214 1 39.15 ? CBB 3TZ 187 A 1 HETATM 30 C CBD 3TZ . . . B 2 -3.39 16.286 27.068 1 19.64 ? CBD 3TZ 187 A 1 HETATM 31 C CBE 3TZ . . . B 2 -2.53 18.493 27.054 1 12.21 ? CBE 3TZ 187 A 1 HETATM 32 C CBG 3TZ . . . B 2 -3.041 17.435 26.302 1 16.1 ? CBG 3TZ 187 A 1 HETATM 33 O OE1 3TZ . . . B 2 2.209 7.824 23.791 1 59.72 ? OE1 3TZ 187 A 1 HETATM 34 O OE2 3TZ . . . B 2 2.373 8.385 21.584 1 62.28 ? OE2 3TZ 187 A 1 HETATM 35 O OXT 3TZ . . . B 2 3.758 13.621 25.06 1 28.89 ? OXT 3TZ 187 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 35 #