data_3NTZ # _model_server_result.job_id 3bxCQKbBuLUOyZOI6NKC_Q _model_server_result.datetime_utc '2024-11-26 19:09:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ntz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":188}' # _entry.id 3NTZ # _exptl.entry_id 3NTZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3NTZ _cell.length_a 84.287 _cell.length_b 84.287 _cell.length_c 77.792 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NTZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 296 n n PA O2A NDP sing 297 n n PA O5B NDP sing 298 n n PA O3 NDP sing 299 n n O2A HOA2 NDP sing 300 n n O5B C5B NDP sing 301 n n C5B C4B NDP sing 302 n n C5B H51A NDP sing 303 n n C5B H52A NDP sing 304 n n C4B O4B NDP sing 305 n n C4B C3B NDP sing 306 n n C4B H4B NDP sing 307 n n O4B C1B NDP sing 308 n n C3B O3B NDP sing 309 n n C3B C2B NDP sing 310 n n C3B H3B NDP sing 311 n n O3B HO3A NDP sing 312 n n C2B O2B NDP sing 313 n n C2B C1B NDP sing 314 n n C2B H2B NDP sing 315 n n O2B P2B NDP sing 316 n n C1B N9A NDP sing 317 n n C1B H1B NDP sing 318 n n N9A C8A NDP sing 319 n y N9A C4A NDP sing 320 n y C8A N7A NDP doub 321 n y C8A H8A NDP sing 322 n n N7A C5A NDP sing 323 n y C5A C6A NDP sing 324 n y C5A C4A NDP doub 325 n y C6A N6A NDP sing 326 n n C6A N1A NDP doub 327 n y N6A H61A NDP sing 328 n n N6A H62A NDP sing 329 n n N1A C2A NDP sing 330 n y C2A N3A NDP doub 331 n y C2A H2A NDP sing 332 n n N3A C4A NDP sing 333 n y O3 PN NDP sing 334 n n PN O1N NDP doub 335 n n PN O2N NDP sing 336 n n PN O5D NDP sing 337 n n O2N H21N NDP sing 338 n n O5D C5D NDP sing 339 n n C5D C4D NDP sing 340 n n C5D H51N NDP sing 341 n n C5D H52N NDP sing 342 n n C4D O4D NDP sing 343 n n C4D C3D NDP sing 344 n n C4D H4D NDP sing 345 n n O4D C1D NDP sing 346 n n C3D O3D NDP sing 347 n n C3D C2D NDP sing 348 n n C3D H3D NDP sing 349 n n O3D HO3N NDP sing 350 n n C2D O2D NDP sing 351 n n C2D C1D NDP sing 352 n n C2D H2D NDP sing 353 n n O2D HO2N NDP sing 354 n n C1D N1N NDP sing 355 n n C1D H1D NDP sing 356 n n N1N C2N NDP sing 357 n n N1N C6N NDP sing 358 n n C2N C3N NDP doub 359 n n C2N H2N NDP sing 360 n n C3N C7N NDP sing 361 n n C3N C4N NDP sing 362 n n C7N O7N NDP doub 363 n n C7N N7N NDP sing 364 n n N7N H71N NDP sing 365 n n N7N H72N NDP sing 366 n n C4N C5N NDP sing 367 n n C4N H41N NDP sing 368 n n C4N H42N NDP sing 369 n n C5N C6N NDP doub 370 n n C5N H5N NDP sing 371 n n C6N H6N NDP sing 372 n n P2B O1X NDP doub 373 n n P2B O2X NDP sing 374 n n P2B O3X NDP sing 375 n n O2X HOP2 NDP sing 376 n n O3X HOP3 NDP sing 377 n n # _atom_sites.entry_id 3NTZ _atom_sites.fract_transf_matrix[1][1] 0.011864 _atom_sites.fract_transf_matrix[1][2] 0.00685 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0137 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012855 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 3TZ A 1 187 187 3TZ 3TZ . C 3 NDP A 1 188 188 NDP NDP . D 4 SO4 A 1 189 189 SO4 SO4 . E 4 SO4 A 1 190 190 SO4 SO4 . F 4 SO4 A 1 191 191 SO4 SO4 . G 4 SO4 A 1 192 192 SO4 SO4 . H 4 SO4 A 1 193 193 SO4 SO4 . I 5 HOH A 1 194 194 HOH HOH . I 5 HOH A 2 195 195 HOH HOH . I 5 HOH A 3 196 196 HOH HOH . I 5 HOH A 4 197 197 HOH HOH . I 5 HOH A 5 198 198 HOH HOH . I 5 HOH A 6 199 199 HOH HOH . I 5 HOH A 7 200 200 HOH HOH . I 5 HOH A 8 201 201 HOH HOH . I 5 HOH A 9 202 202 HOH HOH . I 5 HOH A 10 203 203 HOH HOH . I 5 HOH A 11 204 204 HOH HOH . I 5 HOH A 12 205 205 HOH HOH . I 5 HOH A 13 206 206 HOH HOH . I 5 HOH A 14 207 207 HOH HOH . I 5 HOH A 15 208 208 HOH HOH . I 5 HOH A 16 209 209 HOH HOH . I 5 HOH A 17 210 210 HOH HOH . I 5 HOH A 18 211 211 HOH HOH . I 5 HOH A 19 212 212 HOH HOH . I 5 HOH A 20 213 213 HOH HOH . I 5 HOH A 21 214 214 HOH HOH . I 5 HOH A 22 215 215 HOH HOH . I 5 HOH A 23 216 216 HOH HOH . I 5 HOH A 24 217 217 HOH HOH . I 5 HOH A 25 218 218 HOH HOH . I 5 HOH A 26 219 219 HOH HOH . I 5 HOH A 27 220 220 HOH HOH . I 5 HOH A 28 221 221 HOH HOH . I 5 HOH A 29 222 222 HOH HOH . I 5 HOH A 30 223 223 HOH HOH . I 5 HOH A 31 224 224 HOH HOH . I 5 HOH A 32 225 225 HOH HOH . I 5 HOH A 33 226 226 HOH HOH . I 5 HOH A 34 227 227 HOH HOH . I 5 HOH A 35 228 228 HOH HOH . I 5 HOH A 36 229 229 HOH HOH . I 5 HOH A 37 230 230 HOH HOH . I 5 HOH A 38 231 231 HOH HOH . I 5 HOH A 39 232 232 HOH HOH . I 5 HOH A 40 233 233 HOH HOH . I 5 HOH A 41 234 234 HOH HOH . I 5 HOH A 42 235 235 HOH HOH . I 5 HOH A 43 236 236 HOH HOH . I 5 HOH A 44 237 237 HOH HOH . I 5 HOH A 45 238 238 HOH HOH . I 5 HOH A 46 239 239 HOH HOH . I 5 HOH A 47 240 240 HOH HOH . I 5 HOH A 48 241 241 HOH HOH . I 5 HOH A 49 242 242 HOH HOH . I 5 HOH A 50 243 243 HOH HOH . I 5 HOH A 51 244 244 HOH HOH . I 5 HOH A 52 245 245 HOH HOH . I 5 HOH A 53 246 246 HOH HOH . I 5 HOH A 54 247 247 HOH HOH . I 5 HOH A 55 248 248 HOH HOH . I 5 HOH A 56 249 249 HOH HOH . I 5 HOH A 57 250 250 HOH HOH . I 5 HOH A 58 251 251 HOH HOH . I 5 HOH A 59 252 252 HOH HOH . I 5 HOH A 60 253 253 HOH HOH . I 5 HOH A 61 254 254 HOH HOH . I 5 HOH A 62 255 255 HOH HOH . I 5 HOH A 63 256 256 HOH HOH . I 5 HOH A 64 257 257 HOH HOH . I 5 HOH A 65 258 258 HOH HOH . I 5 HOH A 66 259 259 HOH HOH . I 5 HOH A 67 260 260 HOH HOH . I 5 HOH A 68 261 261 HOH HOH . I 5 HOH A 69 262 262 HOH HOH . I 5 HOH A 70 263 263 HOH HOH . I 5 HOH A 71 264 264 HOH HOH . I 5 HOH A 72 265 265 HOH HOH . I 5 HOH A 73 266 266 HOH HOH . I 5 HOH A 74 267 267 HOH HOH . I 5 HOH A 75 268 268 HOH HOH . I 5 HOH A 76 269 269 HOH HOH . I 5 HOH A 77 270 270 HOH HOH . I 5 HOH A 78 271 271 HOH HOH . I 5 HOH A 79 272 272 HOH HOH . I 5 HOH A 80 273 273 HOH HOH . I 5 HOH A 81 274 274 HOH HOH . I 5 HOH A 82 275 275 HOH HOH . I 5 HOH A 83 276 276 HOH HOH . I 5 HOH A 84 277 277 HOH HOH . I 5 HOH A 85 278 278 HOH HOH . I 5 HOH A 86 279 279 HOH HOH . I 5 HOH A 87 280 280 HOH HOH . I 5 HOH A 88 281 281 HOH HOH . I 5 HOH A 89 282 282 HOH HOH . I 5 HOH A 90 283 283 HOH HOH . I 5 HOH A 91 284 284 HOH HOH . I 5 HOH A 92 285 285 HOH HOH . I 5 HOH A 93 286 286 HOH HOH . I 5 HOH A 94 287 287 HOH HOH . I 5 HOH A 95 288 288 HOH HOH . I 5 HOH A 96 289 289 HOH HOH . I 5 HOH A 97 290 290 HOH HOH . I 5 HOH A 98 291 291 HOH HOH . I 5 HOH A 99 292 292 HOH HOH . I 5 HOH A 100 293 293 HOH HOH . I 5 HOH A 101 294 294 HOH HOH . I 5 HOH A 102 295 295 HOH HOH . I 5 HOH A 103 296 296 HOH HOH . I 5 HOH A 104 297 297 HOH HOH . I 5 HOH A 105 298 298 HOH HOH . I 5 HOH A 106 299 299 HOH HOH . I 5 HOH A 107 300 300 HOH HOH . I 5 HOH A 108 301 301 HOH HOH . I 5 HOH A 109 302 302 HOH HOH . I 5 HOH A 110 303 303 HOH HOH . I 5 HOH A 111 304 304 HOH HOH . I 5 HOH A 112 305 305 HOH HOH . I 5 HOH A 113 306 306 HOH HOH . I 5 HOH A 114 307 307 HOH HOH . I 5 HOH A 115 308 308 HOH HOH . I 5 HOH A 116 309 309 HOH HOH . I 5 HOH A 117 310 310 HOH HOH . I 5 HOH A 118 311 311 HOH HOH . I 5 HOH A 119 312 312 HOH HOH . I 5 HOH A 120 313 313 HOH HOH . I 5 HOH A 121 314 314 HOH HOH . I 5 HOH A 122 315 315 HOH HOH . I 5 HOH A 123 316 316 HOH HOH . I 5 HOH A 124 317 317 HOH HOH . I 5 HOH A 125 318 318 HOH HOH . I 5 HOH A 126 319 319 HOH HOH . I 5 HOH A 127 320 320 HOH HOH . I 5 HOH A 128 321 321 HOH HOH . I 5 HOH A 129 322 322 HOH HOH . I 5 HOH A 130 323 323 HOH HOH . I 5 HOH A 131 324 324 HOH HOH . I 5 HOH A 132 325 325 HOH HOH . I 5 HOH A 133 326 326 HOH HOH . I 5 HOH A 134 327 327 HOH HOH . I 5 HOH A 135 328 328 HOH HOH . I 5 HOH A 136 329 329 HOH HOH . I 5 HOH A 137 330 330 HOH HOH . I 5 HOH A 138 331 331 HOH HOH . I 5 HOH A 139 332 332 HOH HOH . I 5 HOH A 140 333 333 HOH HOH . I 5 HOH A 141 334 334 HOH HOH . I 5 HOH A 142 335 335 HOH HOH . I 5 HOH A 143 336 336 HOH HOH . I 5 HOH A 144 337 337 HOH HOH . I 5 HOH A 145 338 338 HOH HOH . I 5 HOH A 146 339 339 HOH HOH . I 5 HOH A 147 340 340 HOH HOH . I 5 HOH A 148 341 341 HOH HOH . I 5 HOH A 149 342 342 HOH HOH . I 5 HOH A 150 343 343 HOH HOH . I 5 HOH A 151 344 344 HOH HOH . I 5 HOH A 152 345 345 HOH HOH . I 5 HOH A 153 346 346 HOH HOH . I 5 HOH A 154 347 347 HOH HOH . I 5 HOH A 155 348 348 HOH HOH . I 5 HOH A 156 349 349 HOH HOH . I 5 HOH A 157 350 350 HOH HOH . I 5 HOH A 158 351 351 HOH HOH . I 5 HOH A 159 352 352 HOH HOH . I 5 HOH A 160 353 353 HOH HOH . I 5 HOH A 161 354 354 HOH HOH . I 5 HOH A 162 355 355 HOH HOH . I 5 HOH A 163 356 356 HOH HOH . I 5 HOH A 164 357 357 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . C 3 -6.183 22.421 35.983 1 12.37 ? PA NDP 188 A 1 HETATM 2 O O1A NDP . . . C 3 -5.275 21.464 35.298 1 11.67 ? O1A NDP 188 A 1 HETATM 3 O O2A NDP . . . C 3 -6.065 23.85 35.743 1 13.09 ? O2A NDP 188 A 1 HETATM 4 O O5B NDP . . . C 3 -6.057 22.142 37.57 1 11.28 ? O5B NDP 188 A 1 HETATM 5 C C5B NDP . . . C 3 -6.61 23.073 38.446 1 11.66 ? C5B NDP 188 A 1 HETATM 6 C C4B NDP . . . C 3 -5.85 22.905 39.8 1 11.99 ? C4B NDP 188 A 1 HETATM 7 O O4B NDP . . . C 3 -4.504 23.389 39.457 1 13.18 ? O4B NDP 188 A 1 HETATM 8 C C3B NDP . . . C 3 -6.391 23.975 40.753 1 13.01 ? C3B NDP 188 A 1 HETATM 9 O O3B NDP . . . C 3 -7.394 23.427 41.634 1 16.38 ? O3B NDP 188 A 1 HETATM 10 C C2B NDP . . . C 3 -5.102 24.242 41.433 1 14.61 ? C2B NDP 188 A 1 HETATM 11 O O2B NDP . . . C 3 -4.654 23.394 42.41 1 15.32 ? O2B NDP 188 A 1 HETATM 12 C C1B NDP . . . C 3 -4.036 24.422 40.435 1 14.91 ? C1B NDP 188 A 1 HETATM 13 N N9A NDP . . . C 3 -3.862 25.674 39.709 1 14.31 ? N9A NDP 188 A 1 HETATM 14 C C8A NDP . . . C 3 -4.389 25.975 38.488 1 14.92 ? C8A NDP 188 A 1 HETATM 15 N N7A NDP . . . C 3 -3.872 27.127 38.125 1 15.85 ? N7A NDP 188 A 1 HETATM 16 C C5A NDP . . . C 3 -3.008 27.55 39.123 1 17.01 ? C5A NDP 188 A 1 HETATM 17 C C6A NDP . . . C 3 -2.239 28.672 39.267 1 19.43 ? C6A NDP 188 A 1 HETATM 18 N N6A NDP . . . C 3 -2.193 29.642 38.32 1 21.06 ? N6A NDP 188 A 1 HETATM 19 N N1A NDP . . . C 3 -1.476 28.746 40.362 1 17.73 ? N1A NDP 188 A 1 HETATM 20 C C2A NDP . . . C 3 -1.458 27.769 41.29 1 17.99 ? C2A NDP 188 A 1 HETATM 21 N N3A NDP . . . C 3 -2.233 26.664 41.195 1 16.05 ? N3A NDP 188 A 1 HETATM 22 C C4A NDP . . . C 3 -3.002 26.622 40.095 1 14.36 ? C4A NDP 188 A 1 HETATM 23 O O3 NDP . . . C 3 -7.759 21.91 35.823 1 12.01 ? O3 NDP 188 A 1 HETATM 24 P PN NDP . . . C 3 -8.826 21.932 34.625 1 12.57 ? PN NDP 188 A 1 HETATM 25 O O1N NDP . . . C 3 -9.987 21.234 35.262 1 14.39 ? O1N NDP 188 A 1 HETATM 26 O O2N NDP . . . C 3 -8.933 23.271 34.07 1 12.41 ? O2N NDP 188 A 1 HETATM 27 O O5D NDP . . . C 3 -8.229 21.07 33.6 1 12 ? O5D NDP 188 A 1 HETATM 28 C C5D NDP . . . C 3 -8.121 19.592 33.565 1 12.44 ? C5D NDP 188 A 1 HETATM 29 C C4D NDP . . . C 3 -9.183 19.081 32.533 1 12.45 ? C4D NDP 188 A 1 HETATM 30 O O4D NDP . . . C 3 -8.851 19.624 31.209 1 11.34 ? O4D NDP 188 A 1 HETATM 31 C C3D NDP . . . C 3 -9.162 17.597 32.402 1 11.49 ? C3D NDP 188 A 1 HETATM 32 O O3D NDP . . . C 3 -10.456 17.128 31.854 1 12.6 ? O3D NDP 188 A 1 HETATM 33 C C2D NDP . . . C 3 -8.14 17.389 31.255 1 11.91 ? C2D NDP 188 A 1 HETATM 34 O O2D NDP . . . C 3 -8.325 16.144 30.514 1 13.11 ? O2D NDP 188 A 1 HETATM 35 C C1D NDP . . . C 3 -8.5 18.592 30.351 1 11.29 ? C1D NDP 188 A 1 HETATM 36 N N1N NDP . . . C 3 -7.31 19.123 29.572 1 11.45 ? N1N NDP 188 A 1 HETATM 37 C C2N NDP . . . C 3 -7.499 19.037 28.213 1 10.51 ? C2N NDP 188 A 1 HETATM 38 C C3N NDP . . . C 3 -6.536 19.624 27.379 1 12.13 ? C3N NDP 188 A 1 HETATM 39 C C7N NDP . . . C 3 -6.689 19.63 25.895 1 11.33 ? C7N NDP 188 A 1 HETATM 40 O O7N NDP . . . C 3 -5.804 20.151 25.202 1 10.68 ? O7N NDP 188 A 1 HETATM 41 N N7N NDP . . . C 3 -7.876 19.175 25.413 1 12.33 ? N7N NDP 188 A 1 HETATM 42 C C4N NDP . . . C 3 -5.374 20.232 27.938 1 11.32 ? C4N NDP 188 A 1 HETATM 43 C C5N NDP . . . C 3 -5.229 20.224 29.357 1 11 ? C5N NDP 188 A 1 HETATM 44 C C6N NDP . . . C 3 -6.189 19.69 30.186 1 11.53 ? C6N NDP 188 A 1 HETATM 45 P P2B NDP . . . C 3 -4.762 23.636 43.999 1 13.05 ? P2B NDP 188 A 1 HETATM 46 O O1X NDP . . . C 3 -4.173 24.978 44.287 1 14.08 ? O1X NDP 188 A 1 HETATM 47 O O2X NDP . . . C 3 -3.959 22.526 44.531 1 12.78 ? O2X NDP 188 A 1 HETATM 48 O O3X NDP . . . C 3 -6.184 23.621 44.401 1 15.83 ? O3X NDP 188 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 48 #