data_3NU0 # _model_server_result.job_id Sqh1Mz3gIEwJ7M5KLe8YtA _model_server_result.datetime_utc '2024-11-05 04:33:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nu0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":188}' # _entry.id 3NU0 # _exptl.entry_id 3NU0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.518 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2-(5-{[(2-amino-4-oxo-3,4-dihydro[1]benzothieno[2,3-d]pyrimidin-5-yl)methyl]amino}-1-oxo-1,3-dihydro-2H-isoindol-2-yl)pentanedioic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3NU0 _cell.length_a 84.395 _cell.length_b 84.395 _cell.length_c 78.193 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NU0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H21 N5 O6 S' _chem_comp.formula_weight 507.518 _chem_comp.id 3TU _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2-(5-{[(2-amino-4-oxo-3,4-dihydro[1]benzothieno[2,3-d]pyrimidin-5-yl)methyl]amino}-1-oxo-1,3-dihydro-2H-isoindol-2-yl)pentanedioic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CA C 3TU sing 1 n n O C 3TU doub 2 n n C OXT 3TU sing 3 n n CA N 3TU sing 4 n n CAQ N 3TU sing 5 n n N CAX 3TU sing 6 n n C2 N1 3TU sing 7 n n N1 C6 3TU sing 8 n n N1 HN1 3TU sing 9 n n NAA C2 3TU sing 10 n n C2 N3 3TU doub 11 n n N3 C4 3TU sing 12 n n C4 C5 3TU doub 13 n y C4 SAU 3TU sing 14 n y C6 C5 3TU sing 15 n n C5 CBH 3TU sing 16 n y O6 C6 3TU doub 17 n n CB CA 3TU sing 18 n n CA HA 3TU sing 19 n n CG CB 3TU sing 20 n n CB HB 3TU sing 21 n n CB HBA 3TU sing 22 n n CG CD 3TU sing 23 n n CD OE1 3TU doub 24 n n CD OE2 3TU sing 25 n n CG HG 3TU sing 26 n n CG HGA 3TU sing 27 n n NAA HNAA 3TU sing 28 n n NAA HNAB 3TU sing 29 n n CAX OAD 3TU doub 30 n n CAJ CAH 3TU doub 31 n y CAL CAH 3TU sing 32 n y CAH HAH 3TU sing 33 n n CAZ CAI 3TU doub 34 n y CAK CAI 3TU sing 35 n y CAI HAI 3TU sing 36 n n CBC CAJ 3TU sing 37 n y CAJ HAJ 3TU sing 38 n n CBD CAK 3TU doub 39 n y CAK HAK 3TU sing 40 n n CBE CAL 3TU doub 41 n y CAL HAL 3TU sing 42 n n CBB CAM 3TU doub 43 n y CAM CAZ 3TU sing 44 n y CAM HAM 3TU sing 45 n n CAP CBC 3TU sing 46 n n CAP NAT 3TU sing 47 n n CAP HAP 3TU sing 48 n n CAP HAPA 3TU sing 49 n n CAQ CBB 3TU sing 50 n n CAQ HAQ 3TU sing 51 n n CAQ HAQA 3TU sing 52 n n CAZ NAT 3TU sing 53 n n NAT HNAT 3TU sing 54 n n SAU CBE 3TU sing 55 n y CAX CBD 3TU sing 56 n n CBB CBD 3TU sing 57 n y CBH CBC 3TU doub 58 n y CBH CBE 3TU sing 59 n y OE2 HOE2 3TU sing 60 n n OXT HOXT 3TU sing 61 n n # _atom_sites.entry_id 3NU0 _atom_sites.fract_transf_matrix[1][1] 0.011849 _atom_sites.fract_transf_matrix[1][2] 0.006841 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013682 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012789 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NDP A 1 187 1 NDP NDP . C 3 3TU A 1 188 1 3TU 3TU . D 4 SO4 A 1 189 1 SO4 SO4 . E 4 SO4 A 1 190 2 SO4 SO4 . F 4 SO4 A 1 191 3 SO4 SO4 . G 5 HOH A 1 192 192 HOH HOH . G 5 HOH A 2 193 193 HOH HOH . G 5 HOH A 3 194 1 HOH HOH . G 5 HOH A 4 195 3 HOH HOH . G 5 HOH A 5 196 4 HOH HOH . G 5 HOH A 6 197 5 HOH HOH . G 5 HOH A 7 198 6 HOH HOH . G 5 HOH A 8 199 7 HOH HOH . G 5 HOH A 9 200 8 HOH HOH . G 5 HOH A 10 201 9 HOH HOH . G 5 HOH A 11 202 10 HOH HOH . G 5 HOH A 12 203 11 HOH HOH . G 5 HOH A 13 204 12 HOH HOH . G 5 HOH A 14 205 13 HOH HOH . G 5 HOH A 15 206 14 HOH HOH . G 5 HOH A 16 207 15 HOH HOH . G 5 HOH A 17 208 16 HOH HOH . G 5 HOH A 18 209 17 HOH HOH . G 5 HOH A 19 210 18 HOH HOH . G 5 HOH A 20 211 19 HOH HOH . G 5 HOH A 21 212 21 HOH HOH . G 5 HOH A 22 213 22 HOH HOH . G 5 HOH A 23 214 24 HOH HOH . G 5 HOH A 24 215 25 HOH HOH . G 5 HOH A 25 216 26 HOH HOH . G 5 HOH A 26 217 28 HOH HOH . G 5 HOH A 27 218 29 HOH HOH . G 5 HOH A 28 219 30 HOH HOH . G 5 HOH A 29 220 32 HOH HOH . G 5 HOH A 30 221 33 HOH HOH . G 5 HOH A 31 222 34 HOH HOH . G 5 HOH A 32 223 35 HOH HOH . G 5 HOH A 33 224 36 HOH HOH . G 5 HOH A 34 225 37 HOH HOH . G 5 HOH A 35 226 38 HOH HOH . G 5 HOH A 36 227 39 HOH HOH . G 5 HOH A 37 228 40 HOH HOH . G 5 HOH A 38 229 41 HOH HOH . G 5 HOH A 39 230 42 HOH HOH . G 5 HOH A 40 231 43 HOH HOH . G 5 HOH A 41 232 44 HOH HOH . G 5 HOH A 42 233 45 HOH HOH . G 5 HOH A 43 234 46 HOH HOH . G 5 HOH A 44 235 47 HOH HOH . G 5 HOH A 45 236 48 HOH HOH . G 5 HOH A 46 237 49 HOH HOH . G 5 HOH A 47 238 50 HOH HOH . G 5 HOH A 48 239 51 HOH HOH . G 5 HOH A 49 240 52 HOH HOH . G 5 HOH A 50 241 53 HOH HOH . G 5 HOH A 51 242 54 HOH HOH . G 5 HOH A 52 243 55 HOH HOH . G 5 HOH A 53 244 56 HOH HOH . G 5 HOH A 54 245 57 HOH HOH . G 5 HOH A 55 246 58 HOH HOH . G 5 HOH A 56 247 59 HOH HOH . G 5 HOH A 57 248 60 HOH HOH . G 5 HOH A 58 249 61 HOH HOH . G 5 HOH A 59 250 62 HOH HOH . G 5 HOH A 60 251 63 HOH HOH . G 5 HOH A 61 252 64 HOH HOH . G 5 HOH A 62 253 65 HOH HOH . G 5 HOH A 63 254 66 HOH HOH . G 5 HOH A 64 255 67 HOH HOH . G 5 HOH A 65 256 68 HOH HOH . G 5 HOH A 66 257 69 HOH HOH . G 5 HOH A 67 258 70 HOH HOH . G 5 HOH A 68 259 71 HOH HOH . G 5 HOH A 69 260 72 HOH HOH . G 5 HOH A 70 261 73 HOH HOH . G 5 HOH A 71 262 74 HOH HOH . G 5 HOH A 72 263 75 HOH HOH . G 5 HOH A 73 264 76 HOH HOH . G 5 HOH A 74 265 77 HOH HOH . G 5 HOH A 75 266 78 HOH HOH . G 5 HOH A 76 267 79 HOH HOH . G 5 HOH A 77 268 80 HOH HOH . G 5 HOH A 78 269 81 HOH HOH . G 5 HOH A 79 270 83 HOH HOH . G 5 HOH A 80 271 84 HOH HOH . G 5 HOH A 81 272 85 HOH HOH . G 5 HOH A 82 273 86 HOH HOH . G 5 HOH A 83 274 87 HOH HOH . G 5 HOH A 84 275 88 HOH HOH . G 5 HOH A 85 276 89 HOH HOH . G 5 HOH A 86 277 90 HOH HOH . G 5 HOH A 87 278 91 HOH HOH . G 5 HOH A 88 279 92 HOH HOH . G 5 HOH A 89 280 93 HOH HOH . G 5 HOH A 90 281 94 HOH HOH . G 5 HOH A 91 282 95 HOH HOH . G 5 HOH A 92 283 96 HOH HOH . G 5 HOH A 93 284 97 HOH HOH . G 5 HOH A 94 285 98 HOH HOH . G 5 HOH A 95 286 99 HOH HOH . G 5 HOH A 96 287 100 HOH HOH . G 5 HOH A 97 288 101 HOH HOH . G 5 HOH A 98 289 102 HOH HOH . G 5 HOH A 99 290 103 HOH HOH . G 5 HOH A 100 291 104 HOH HOH . G 5 HOH A 101 292 105 HOH HOH . G 5 HOH A 102 293 106 HOH HOH . G 5 HOH A 103 294 107 HOH HOH . G 5 HOH A 104 295 108 HOH HOH . G 5 HOH A 105 296 109 HOH HOH . G 5 HOH A 106 297 110 HOH HOH . G 5 HOH A 107 298 111 HOH HOH . G 5 HOH A 108 299 112 HOH HOH . G 5 HOH A 109 300 113 HOH HOH . G 5 HOH A 110 301 114 HOH HOH . G 5 HOH A 111 302 115 HOH HOH . G 5 HOH A 112 303 116 HOH HOH . G 5 HOH A 113 304 117 HOH HOH . G 5 HOH A 114 305 118 HOH HOH . G 5 HOH A 115 306 119 HOH HOH . G 5 HOH A 116 307 120 HOH HOH . G 5 HOH A 117 308 121 HOH HOH . G 5 HOH A 118 309 122 HOH HOH . G 5 HOH A 119 310 123 HOH HOH . G 5 HOH A 120 311 124 HOH HOH . G 5 HOH A 121 312 125 HOH HOH . G 5 HOH A 122 313 126 HOH HOH . G 5 HOH A 123 314 127 HOH HOH . G 5 HOH A 124 315 128 HOH HOH . G 5 HOH A 125 316 129 HOH HOH . G 5 HOH A 126 317 130 HOH HOH . G 5 HOH A 127 318 131 HOH HOH . G 5 HOH A 128 319 132 HOH HOH . G 5 HOH A 129 320 133 HOH HOH . G 5 HOH A 130 321 134 HOH HOH . G 5 HOH A 131 322 135 HOH HOH . G 5 HOH A 132 323 136 HOH HOH . G 5 HOH A 133 324 137 HOH HOH . G 5 HOH A 134 325 138 HOH HOH . G 5 HOH A 135 326 139 HOH HOH . G 5 HOH A 136 327 140 HOH HOH . G 5 HOH A 137 328 141 HOH HOH . G 5 HOH A 138 329 142 HOH HOH . G 5 HOH A 139 330 143 HOH HOH . G 5 HOH A 140 331 144 HOH HOH . G 5 HOH A 141 332 145 HOH HOH . G 5 HOH A 142 333 146 HOH HOH . G 5 HOH A 143 334 147 HOH HOH . G 5 HOH A 144 335 148 HOH HOH . G 5 HOH A 145 336 149 HOH HOH . G 5 HOH A 146 337 150 HOH HOH . G 5 HOH A 147 338 151 HOH HOH . G 5 HOH A 148 339 152 HOH HOH . G 5 HOH A 149 340 153 HOH HOH . G 5 HOH A 150 341 154 HOH HOH . G 5 HOH A 151 342 155 HOH HOH . G 5 HOH A 152 343 156 HOH HOH . G 5 HOH A 153 344 157 HOH HOH . G 5 HOH A 154 345 158 HOH HOH . G 5 HOH A 155 346 159 HOH HOH . G 5 HOH A 156 347 160 HOH HOH . G 5 HOH A 157 348 161 HOH HOH . G 5 HOH A 158 349 162 HOH HOH . G 5 HOH A 159 350 163 HOH HOH . G 5 HOH A 160 351 164 HOH HOH . G 5 HOH A 161 352 165 HOH HOH . G 5 HOH A 162 353 166 HOH HOH . G 5 HOH A 163 354 167 HOH HOH . G 5 HOH A 164 355 168 HOH HOH . G 5 HOH A 165 356 169 HOH HOH . G 5 HOH A 166 357 170 HOH HOH . G 5 HOH A 167 358 171 HOH HOH . G 5 HOH A 168 359 172 HOH HOH . G 5 HOH A 169 360 173 HOH HOH . G 5 HOH A 170 361 174 HOH HOH . G 5 HOH A 171 362 175 HOH HOH . G 5 HOH A 172 363 176 HOH HOH . G 5 HOH A 173 364 177 HOH HOH . G 5 HOH A 174 365 178 HOH HOH . G 5 HOH A 175 366 179 HOH HOH . G 5 HOH A 176 367 180 HOH HOH . G 5 HOH A 177 368 181 HOH HOH . G 5 HOH A 178 369 182 HOH HOH . G 5 HOH A 179 370 183 HOH HOH . G 5 HOH A 180 371 184 HOH HOH . G 5 HOH A 181 372 185 HOH HOH . G 5 HOH A 182 373 186 HOH HOH . G 5 HOH A 183 374 187 HOH HOH . G 5 HOH A 184 375 188 HOH HOH . G 5 HOH A 185 376 189 HOH HOH . G 5 HOH A 186 377 190 HOH HOH . G 5 HOH A 187 378 191 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C 3TU . . . C 3 -12.715 -2.717 -0.8 1 19.55 ? C 3TU 188 A 1 HETATM 2 N N 3TU . . . C 3 -10.92 -4.489 -0.427 1 18.9 ? N 3TU 188 A 1 HETATM 3 O O 3TU . . . C 3 -13.657 -3.553 -0.879 1 16.01 ? O 3TU 188 A 1 HETATM 4 N N1 3TU . . . C 3 -13.664 -12.024 -3.406 1 8.35 ? N1 3TU 188 A 1 HETATM 5 C C2 3TU . . . C 3 -15.004 -12.229 -3.543 1 7.78 ? C2 3TU 188 A 1 HETATM 6 N N3 3TU . . . C 3 -15.812 -12.307 -2.499 1 8.82 ? N3 3TU 188 A 1 HETATM 7 C C4 3TU . . . C 3 -15.254 -12.037 -1.273 1 9.02 ? C4 3TU 188 A 1 HETATM 8 C C5 3TU . . . C 3 -13.88 -11.683 -1.05 1 7.86 ? C5 3TU 188 A 1 HETATM 9 C C6 3TU . . . C 3 -13.096 -11.838 -2.181 1 9.97 ? C6 3TU 188 A 1 HETATM 10 O O6 3TU . . . C 3 -11.764 -11.767 -2.25 1 11.96 ? O6 3TU 188 A 1 HETATM 11 C CA 3TU . . . C 3 -11.379 -3.28 -1.171 1 19.01 ? CA 3TU 188 A 1 HETATM 12 C CB 3TU . . . C 3 -10.83 -3.069 -2.521 1 20.9 ? CB 3TU 188 A 1 HETATM 13 C CD 3TU . . . C 3 -8.533 -2.228 -2.244 1 29.21 ? CD 3TU 188 A 1 HETATM 14 C CG 3TU . . . C 3 -9.356 -3.425 -2.815 1 24.23 ? CG 3TU 188 A 1 HETATM 15 N NAA 3TU . . . C 3 -15.465 -12.42 -4.79 1 8.55 ? NAA 3TU 188 A 1 HETATM 16 O OAD 3TU . . . C 3 -9.017 -3.783 0.506 1 21.59 ? OAD 3TU 188 A 1 HETATM 17 C CAH 3TU . . . C 3 -13.804 -10.825 3.117 1 10.77 ? CAH 3TU 188 A 1 HETATM 18 C CAI 3TU . . . C 3 -9.004 -8.111 1.647 1 20.21 ? CAI 3TU 188 A 1 HETATM 19 C CAJ 3TU . . . C 3 -12.6 -10.755 2.408 1 10.48 ? CAJ 3TU 188 A 1 HETATM 20 C CAK 3TU . . . C 3 -8.814 -6.728 1.477 1 23.03 ? CAK 3TU 188 A 1 HETATM 21 C CAL 3TU . . . C 3 -15.007 -11.225 2.46 1 9.65 ? CAL 3TU 188 A 1 HETATM 22 C CAM 3TU . . . C 3 -10.996 -8.123 0.253 1 15.48 ? CAM 3TU 188 A 1 HETATM 23 C CAP 3TU . . . C 3 -11.121 -10.983 0.442 1 11.77 ? CAP 3TU 188 A 1 HETATM 24 C CAQ 3TU . . . C 3 -11.601 -5.787 -0.673 1 18.8 ? CAQ 3TU 188 A 1 HETATM 25 N NAT 3TU . . . C 3 -10.175 -10.133 1.244 1 16.36 ? NAT 3TU 188 A 1 HETATM 26 S SAU 3TU . . . C 3 -16.184 -12.043 0.111 1 8.59 ? SAU 3TU 188 A 1 HETATM 27 C CAX 3TU . . . C 3 -9.855 -4.688 0.327 1 20.01 ? CAX 3TU 188 A 1 HETATM 28 C CAZ 3TU . . . C 3 -10.081 -8.82 1.058 1 15.5 ? CAZ 3TU 188 A 1 HETATM 29 C CBB 3TU . . . C 3 -10.798 -6.717 0.111 1 15.7 ? CBB 3TU 188 A 1 HETATM 30 C CBC 3TU . . . C 3 -12.466 -11.06 1.069 1 10.1 ? CBC 3TU 188 A 1 HETATM 31 C CBD 3TU . . . C 3 -9.737 -6.031 0.722 1 18.73 ? CBD 3TU 188 A 1 HETATM 32 C CBE 3TU . . . C 3 -14.822 -11.481 1.069 1 8.07 ? CBE 3TU 188 A 1 HETATM 33 C CBH 3TU . . . C 3 -13.659 -11.429 0.324 1 8.68 ? CBH 3TU 188 A 1 HETATM 34 O OE1 3TU . . . C 3 -9.153 -1.136 -2.185 1 35.9 ? OE1 3TU 188 A 1 HETATM 35 O OE2 3TU . . . C 3 -7.315 -2.406 -1.931 1 34.96 ? OE2 3TU 188 A 1 HETATM 36 O OXT 3TU . . . C 3 -12.892 -1.519 -0.498 1 21.28 ? OXT 3TU 188 A 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 223 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 36 #