data_3NUD # _model_server_result.job_id 780UvWHBoH-ztSC3DmaIPA _model_server_result.datetime_utc '2024-11-05 19:41:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nud # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":463}' # _entry.id 3NUD # _exptl.entry_id 3NUD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3NUD _cell.length_a 204.65 _cell.length_b 204.65 _cell.length_c 66.61 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NUD _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N ? 3 J N N ? 3 K N N ? 3 L N N # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 260 n n P O2 PO4 sing 261 n n P O3 PO4 sing 262 n n P O4 PO4 sing 263 n n # _atom_sites.entry_id 3NUD _atom_sites.fract_transf_matrix[1][1] 0.004886 _atom_sites.fract_transf_matrix[1][2] 0.002821 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005642 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015013 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PHE A 1 465 465 PHE PHE . D 3 PO4 A 1 463 463 PO4 PO4 . E 2 PHE A 1 466 466 PHE PHE . F 3 PO4 A 1 464 464 PO4 PO4 . G 2 PHE B 1 466 466 PHE PHE . H 2 PHE B 1 467 467 PHE PHE . I 2 PHE B 1 468 468 PHE PHE . J 3 PO4 B 1 463 463 PO4 PO4 . K 3 PO4 B 1 464 464 PO4 PO4 . L 3 PO4 B 1 465 465 PO4 PO4 . M 4 HOH A 1 467 467 HOH HOH . M 4 HOH A 2 468 468 HOH HOH . N 4 HOH B 1 469 469 HOH HOH . N 4 HOH B 2 470 470 HOH HOH . N 4 HOH B 3 471 471 HOH HOH . N 4 HOH B 4 472 472 HOH HOH . N 4 HOH B 5 473 473 HOH HOH . N 4 HOH B 6 474 474 HOH HOH . N 4 HOH B 7 475 475 HOH HOH . N 4 HOH B 8 476 476 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . J 3 10.662 88.341 -11.645 1 20.98 ? P PO4 463 B 1 HETATM 2 O O1 PO4 . . . J 3 11.47 87.385 -12.495 1 19.18 ? O1 PO4 463 B 1 HETATM 3 O O2 PO4 . . . J 3 10.009 89.35 -12.545 1 17.56 ? O2 PO4 463 B 1 HETATM 4 O O3 PO4 . . . J 3 9.545 87.614 -10.912 1 18.93 ? O3 PO4 463 B 1 HETATM 5 O O4 PO4 . . . J 3 11.616 89.033 -10.674 1 21.41 ? O4 PO4 463 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 215 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 5 #