data_3NUD # _model_server_result.job_id 11TfovPXClK7s5j-IU5tgQ _model_server_result.datetime_utc '2024-11-05 19:33:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nud # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":466}' # _entry.id 3NUD # _exptl.entry_id 3NUD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 165.189 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHENYLALANINE _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3NUD _cell.length_a 204.65 _cell.length_b 204.65 _cell.length_c 66.61 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NUD _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N ? 2 G N N ? 2 H N N ? 2 I N N # _chem_comp.formula 'C9 H11 N O2' _chem_comp.formula_weight 165.189 _chem_comp.id PHE _chem_comp.mon_nstd_flag y _chem_comp.name PHENYLALANINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA PHE sing 237 n n N H PHE sing 238 n n N H2 PHE sing 239 n n CA C PHE sing 240 n n CA CB PHE sing 241 n n CA HA PHE sing 242 n n C O PHE doub 243 n n C OXT PHE sing 244 n n CB CG PHE sing 245 n n CB HB2 PHE sing 246 n n CB HB3 PHE sing 247 n n CG CD1 PHE doub 248 n y CG CD2 PHE sing 249 n y CD1 CE1 PHE sing 250 n y CD1 HD1 PHE sing 251 n n CD2 CE2 PHE doub 252 n y CD2 HD2 PHE sing 253 n n CE1 CZ PHE doub 254 n y CE1 HE1 PHE sing 255 n n CE2 CZ PHE sing 256 n y CE2 HE2 PHE sing 257 n n CZ HZ PHE sing 258 n n OXT HXT PHE sing 259 n n # _atom_sites.entry_id 3NUD _atom_sites.fract_transf_matrix[1][1] 0.004886 _atom_sites.fract_transf_matrix[1][2] 0.002821 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005642 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015013 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PHE A 1 465 465 PHE PHE . D 3 PO4 A 1 463 463 PO4 PO4 . E 2 PHE A 1 466 466 PHE PHE . F 3 PO4 A 1 464 464 PO4 PO4 . G 2 PHE B 1 466 466 PHE PHE . H 2 PHE B 1 467 467 PHE PHE . I 2 PHE B 1 468 468 PHE PHE . J 3 PO4 B 1 463 463 PO4 PO4 . K 3 PO4 B 1 464 464 PO4 PO4 . L 3 PO4 B 1 465 465 PO4 PO4 . M 4 HOH A 1 467 467 HOH HOH . M 4 HOH A 2 468 468 HOH HOH . N 4 HOH B 1 469 469 HOH HOH . N 4 HOH B 2 470 470 HOH HOH . N 4 HOH B 3 471 471 HOH HOH . N 4 HOH B 4 472 472 HOH HOH . N 4 HOH B 5 473 473 HOH HOH . N 4 HOH B 6 474 474 HOH HOH . N 4 HOH B 7 475 475 HOH HOH . N 4 HOH B 8 476 476 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N PHE . . . E 2 48.719 101.927 3.35 1 49.86 ? N PHE 466 A 1 HETATM 2 C CA PHE . . . E 2 48.952 103.385 3.471 1 48.69 ? CA PHE 466 A 1 HETATM 3 C C PHE . . . E 2 48.371 103.848 4.808 1 49.4 ? C PHE 466 A 1 HETATM 4 O O PHE . . . E 2 49.094 104.377 5.668 1 48.67 ? O PHE 466 A 1 HETATM 5 C CB PHE . . . E 2 48.304 104.092 2.278 1 47.86 ? CB PHE 466 A 1 HETATM 6 C CG PHE . . . E 2 48.292 105.592 2.382 1 48.84 ? CG PHE 466 A 1 HETATM 7 C CD1 PHE . . . E 2 49.232 106.274 3.153 1 48.24 ? CD1 PHE 466 A 1 HETATM 8 C CD2 PHE . . . E 2 47.383 106.332 1.638 1 48.19 ? CD2 PHE 466 A 1 HETATM 9 C CE1 PHE . . . E 2 49.193 107.662 3.257 1 47.43 ? CE1 PHE 466 A 1 HETATM 10 C CE2 PHE . . . E 2 47.364 107.72 1.71 1 46.72 ? CE2 PHE 466 A 1 HETATM 11 C CZ PHE . . . E 2 48.269 108.384 2.52 1 47.21 ? CZ PHE 466 A 1 HETATM 12 O OXT PHE . . . E 2 47.196 103.58 5.103 1 49.75 ? OXT PHE 466 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 12 #