data_3NUT
#
_model_server_result.job_id            s416KniiL2eJmJZzXxXnpg 
_model_server_result.datetime_utc      '2024-11-05 00:37:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3nut 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":247}' 
#
_entry.id    3NUT 
#
_exptl.entry_id    3NUT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3NUT 
_cell.length_a            85.64 
_cell.length_b            110.99 
_cell.length_c            116.19 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3NUT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,G,H,P,Q,T 1 1 
B,C,I,J,K,L,M,N,O,R,S 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 N N N 
? 3 O N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     3NUT 
_atom_sites.fract_transf_matrix[1][1]    0.011677 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00901 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008607 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 SAH A 1 1501 1501 SAH SAH . 
F 3 GOL A 1 246 1 GOL GOL . 
G 3 GOL A 1 247 2 GOL GOL . 
H 3 GOL A 1 248 2 GOL GOL . 
I 2 SAH B 1 1501 1501 SAH SAH . 
J 3 GOL B 1 246 1 GOL GOL . 
K 3 GOL B 1 247 1 GOL GOL . 
L 3 GOL B 1 248 3 GOL GOL . 
M 2 SAH C 1 1501 1501 SAH SAH . 
N 3 GOL C 1 246 1 GOL GOL . 
O 3 GOL C 1 247 1 GOL GOL . 
P 2 SAH D 1 1501 1501 SAH SAH . 
Q 4 HOH A 1 1506 1506 HOH HOH . 
Q 4 HOH A 2 1507 9 HOH HOH . 
Q 4 HOH A 3 1508 10 HOH HOH . 
Q 4 HOH A 4 1509 18 HOH HOH . 
Q 4 HOH A 5 1510 113 HOH HOH . 
Q 4 HOH A 6 1511 197 HOH HOH . 
Q 4 HOH A 7 1512 1512 HOH HOH . 
Q 4 HOH A 8 1515 1515 HOH HOH . 
Q 4 HOH A 9 1519 1519 HOH HOH . 
Q 4 HOH A 10 1524 1524 HOH HOH . 
Q 4 HOH A 11 1528 1528 HOH HOH . 
Q 4 HOH A 12 1532 1532 HOH HOH . 
Q 4 HOH A 13 1535 1535 HOH HOH . 
Q 4 HOH A 14 1538 1538 HOH HOH . 
Q 4 HOH A 15 1541 1541 HOH HOH . 
Q 4 HOH A 16 1547 1547 HOH HOH . 
Q 4 HOH A 17 1551 1551 HOH HOH . 
Q 4 HOH A 18 1562 1562 HOH HOH . 
Q 4 HOH A 19 1575 1575 HOH HOH . 
Q 4 HOH A 20 1579 1579 HOH HOH . 
Q 4 HOH A 21 1581 1581 HOH HOH . 
Q 4 HOH A 22 1591 1591 HOH HOH . 
Q 4 HOH A 23 1593 1593 HOH HOH . 
Q 4 HOH A 24 1595 1595 HOH HOH . 
Q 4 HOH A 25 1596 1596 HOH HOH . 
Q 4 HOH A 26 1597 1597 HOH HOH . 
Q 4 HOH A 27 1598 1598 HOH HOH . 
Q 4 HOH A 28 1604 1604 HOH HOH . 
Q 4 HOH A 29 1613 1613 HOH HOH . 
Q 4 HOH A 30 1624 1624 HOH HOH . 
Q 4 HOH A 31 1626 1626 HOH HOH . 
Q 4 HOH A 32 1630 1630 HOH HOH . 
Q 4 HOH A 33 1637 1637 HOH HOH . 
Q 4 HOH A 34 1642 1642 HOH HOH . 
Q 4 HOH A 35 1654 1654 HOH HOH . 
Q 4 HOH A 36 1655 1655 HOH HOH . 
Q 4 HOH A 37 1657 1657 HOH HOH . 
Q 4 HOH A 38 1678 1678 HOH HOH . 
Q 4 HOH A 39 1679 1679 HOH HOH . 
Q 4 HOH A 40 1700 1700 HOH HOH . 
Q 4 HOH A 41 1701 1701 HOH HOH . 
Q 4 HOH A 42 1707 1707 HOH HOH . 
Q 4 HOH A 43 1713 1713 HOH HOH . 
Q 4 HOH A 44 1715 1715 HOH HOH . 
Q 4 HOH A 45 1718 1718 HOH HOH . 
Q 4 HOH A 46 1721 1721 HOH HOH . 
R 4 HOH B 1 1502 1502 HOH HOH . 
R 4 HOH B 2 1503 1503 HOH HOH . 
R 4 HOH B 3 1504 2 HOH HOH . 
R 4 HOH B 4 1505 1505 HOH HOH . 
R 4 HOH B 5 1506 24 HOH HOH . 
R 4 HOH B 6 1507 25 HOH HOH . 
R 4 HOH B 7 1508 47 HOH HOH . 
R 4 HOH B 8 1509 130 HOH HOH . 
R 4 HOH B 9 1513 1513 HOH HOH . 
R 4 HOH B 10 1518 1518 HOH HOH . 
R 4 HOH B 11 1529 1529 HOH HOH . 
R 4 HOH B 12 1531 1531 HOH HOH . 
R 4 HOH B 13 1534 1534 HOH HOH . 
R 4 HOH B 14 1543 1543 HOH HOH . 
R 4 HOH B 15 1544 1544 HOH HOH . 
R 4 HOH B 16 1545 1545 HOH HOH . 
R 4 HOH B 17 1555 1555 HOH HOH . 
R 4 HOH B 18 1558 1558 HOH HOH . 
R 4 HOH B 19 1561 1561 HOH HOH . 
R 4 HOH B 20 1563 1563 HOH HOH . 
R 4 HOH B 21 1570 1570 HOH HOH . 
R 4 HOH B 22 1571 1571 HOH HOH . 
R 4 HOH B 23 1572 1572 HOH HOH . 
R 4 HOH B 24 1577 1577 HOH HOH . 
R 4 HOH B 25 1580 1580 HOH HOH . 
R 4 HOH B 26 1585 1585 HOH HOH . 
R 4 HOH B 27 1589 1589 HOH HOH . 
R 4 HOH B 28 1592 1592 HOH HOH . 
R 4 HOH B 29 1600 1600 HOH HOH . 
R 4 HOH B 30 1603 1603 HOH HOH . 
R 4 HOH B 31 1612 1612 HOH HOH . 
R 4 HOH B 32 1621 1621 HOH HOH . 
R 4 HOH B 33 1622 1622 HOH HOH . 
R 4 HOH B 34 1625 1625 HOH HOH . 
R 4 HOH B 35 1628 1628 HOH HOH . 
R 4 HOH B 36 1629 1629 HOH HOH . 
R 4 HOH B 37 1631 1631 HOH HOH . 
R 4 HOH B 38 1632 1632 HOH HOH . 
R 4 HOH B 39 1635 1635 HOH HOH . 
R 4 HOH B 40 1638 1638 HOH HOH . 
R 4 HOH B 41 1644 1644 HOH HOH . 
R 4 HOH B 42 1652 1652 HOH HOH . 
R 4 HOH B 43 1660 1660 HOH HOH . 
R 4 HOH B 44 1661 1661 HOH HOH . 
R 4 HOH B 45 1673 1673 HOH HOH . 
R 4 HOH B 46 1675 1675 HOH HOH . 
R 4 HOH B 47 1676 1676 HOH HOH . 
R 4 HOH B 48 1684 1684 HOH HOH . 
R 4 HOH B 49 1688 1688 HOH HOH . 
R 4 HOH B 50 1689 1689 HOH HOH . 
R 4 HOH B 51 1696 1696 HOH HOH . 
R 4 HOH B 52 1699 1699 HOH HOH . 
R 4 HOH B 53 1705 1705 HOH HOH . 
R 4 HOH B 54 1706 1706 HOH HOH . 
S 4 HOH C 1 1507 1507 HOH HOH . 
S 4 HOH C 2 1508 1508 HOH HOH . 
S 4 HOH C 3 1509 4 HOH HOH . 
S 4 HOH C 4 1510 7 HOH HOH . 
S 4 HOH C 5 1511 19 HOH HOH . 
S 4 HOH C 6 1512 76 HOH HOH . 
S 4 HOH C 7 1513 94 HOH HOH . 
S 4 HOH C 8 1514 1514 HOH HOH . 
S 4 HOH C 9 1515 121 HOH HOH . 
S 4 HOH C 10 1516 123 HOH HOH . 
S 4 HOH C 11 1517 1517 HOH HOH . 
S 4 HOH C 12 1518 160 HOH HOH . 
S 4 HOH C 13 1519 175 HOH HOH . 
S 4 HOH C 14 1522 1522 HOH HOH . 
S 4 HOH C 15 1525 1525 HOH HOH . 
S 4 HOH C 16 1527 1527 HOH HOH . 
S 4 HOH C 17 1533 1533 HOH HOH . 
S 4 HOH C 18 1540 1540 HOH HOH . 
S 4 HOH C 19 1546 1546 HOH HOH . 
S 4 HOH C 20 1550 1550 HOH HOH . 
S 4 HOH C 21 1552 1552 HOH HOH . 
S 4 HOH C 22 1554 1554 HOH HOH . 
S 4 HOH C 23 1557 1557 HOH HOH . 
S 4 HOH C 24 1560 1560 HOH HOH . 
S 4 HOH C 25 1564 1564 HOH HOH . 
S 4 HOH C 26 1567 1567 HOH HOH . 
S 4 HOH C 27 1569 1569 HOH HOH . 
S 4 HOH C 28 1573 1573 HOH HOH . 
S 4 HOH C 29 1586 1586 HOH HOH . 
S 4 HOH C 30 1587 1587 HOH HOH . 
S 4 HOH C 31 1605 1605 HOH HOH . 
S 4 HOH C 32 1609 1609 HOH HOH . 
S 4 HOH C 33 1611 1611 HOH HOH . 
S 4 HOH C 34 1619 1619 HOH HOH . 
S 4 HOH C 35 1623 1623 HOH HOH . 
S 4 HOH C 36 1639 1639 HOH HOH . 
S 4 HOH C 37 1640 1640 HOH HOH . 
S 4 HOH C 38 1641 1641 HOH HOH . 
S 4 HOH C 39 1645 1645 HOH HOH . 
S 4 HOH C 40 1647 1647 HOH HOH . 
S 4 HOH C 41 1656 1656 HOH HOH . 
S 4 HOH C 42 1658 1658 HOH HOH . 
S 4 HOH C 43 1662 1662 HOH HOH . 
S 4 HOH C 44 1663 1663 HOH HOH . 
S 4 HOH C 45 1664 1664 HOH HOH . 
S 4 HOH C 46 1665 1665 HOH HOH . 
S 4 HOH C 47 1667 1667 HOH HOH . 
S 4 HOH C 48 1671 1671 HOH HOH . 
S 4 HOH C 49 1672 1672 HOH HOH . 
S 4 HOH C 50 1677 1677 HOH HOH . 
S 4 HOH C 51 1680 1680 HOH HOH . 
S 4 HOH C 52 1683 1683 HOH HOH . 
S 4 HOH C 53 1694 1694 HOH HOH . 
S 4 HOH C 54 1695 1695 HOH HOH . 
S 4 HOH C 55 1703 1703 HOH HOH . 
S 4 HOH C 56 1710 1710 HOH HOH . 
S 4 HOH C 57 1714 1714 HOH HOH . 
S 4 HOH C 58 1719 1719 HOH HOH . 
S 4 HOH C 59 1720 1720 HOH HOH . 
T 4 HOH D 1 1510 1510 HOH HOH . 
T 4 HOH D 2 1511 13 HOH HOH . 
T 4 HOH D 3 1512 20 HOH HOH . 
T 4 HOH D 4 1513 27 HOH HOH . 
T 4 HOH D 5 1514 89 HOH HOH . 
T 4 HOH D 6 1515 186 HOH HOH . 
T 4 HOH D 7 1521 1521 HOH HOH . 
T 4 HOH D 8 1523 1523 HOH HOH . 
T 4 HOH D 9 1526 1526 HOH HOH . 
T 4 HOH D 10 1536 1536 HOH HOH . 
T 4 HOH D 11 1537 1537 HOH HOH . 
T 4 HOH D 12 1549 1549 HOH HOH . 
T 4 HOH D 13 1553 1553 HOH HOH . 
T 4 HOH D 14 1556 1556 HOH HOH . 
T 4 HOH D 15 1565 1565 HOH HOH . 
T 4 HOH D 16 1566 1566 HOH HOH . 
T 4 HOH D 17 1568 1568 HOH HOH . 
T 4 HOH D 18 1574 1574 HOH HOH . 
T 4 HOH D 19 1576 1576 HOH HOH . 
T 4 HOH D 20 1578 1578 HOH HOH . 
T 4 HOH D 21 1582 1582 HOH HOH . 
T 4 HOH D 22 1584 1584 HOH HOH . 
T 4 HOH D 23 1601 1601 HOH HOH . 
T 4 HOH D 24 1602 1602 HOH HOH . 
T 4 HOH D 25 1608 1608 HOH HOH . 
T 4 HOH D 26 1614 1614 HOH HOH . 
T 4 HOH D 27 1616 1616 HOH HOH . 
T 4 HOH D 28 1617 1617 HOH HOH . 
T 4 HOH D 29 1618 1618 HOH HOH . 
T 4 HOH D 30 1634 1634 HOH HOH . 
T 4 HOH D 31 1651 1651 HOH HOH . 
T 4 HOH D 32 1666 1666 HOH HOH . 
T 4 HOH D 33 1668 1668 HOH HOH . 
T 4 HOH D 34 1670 1670 HOH HOH . 
T 4 HOH D 35 1685 1685 HOH HOH . 
T 4 HOH D 36 1716 1716 HOH HOH . 
T 4 HOH D 37 1722 1722 HOH HOH . 
T 4 HOH D 38 1723 1723 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . O 3 9.083 31.39 52.234 1 48.72 ? C1 GOL 247 C 1 
HETATM 2 O O1 GOL . . . O 3 9.756 31.389 53.491 1 47.41 ? O1 GOL 247 C 1 
HETATM 3 C C2 GOL . . . O 3 9.899 30.881 51.048 1 48.24 ? C2 GOL 247 C 1 
HETATM 4 O O2 GOL . . . O 3 10.037 29.472 50.992 1 49.1 ? O2 GOL 247 C 1 
HETATM 5 C C3 GOL . . . O 3 9.208 31.379 49.793 1 48.29 ? C3 GOL 247 C 1 
HETATM 6 O O3 GOL . . . O 3 8.171 30.532 49.377 1 50.3 ? O3 GOL 247 C 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#