data_3NUY # _model_server_result.job_id bp6AoQpTf88W9ywcucexVw _model_server_result.datetime_utc '2024-12-18 11:22:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nuy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":365}' # _entry.id 3NUY # _exptl.entry_id 3NUY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3NUY _cell.length_a 123.695 _cell.length_b 123.695 _cell.length_c 47.346 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NUY _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1 A,B,C,D,E,F,G,H,I,J 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 0 15.782 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id C _struct_conn.ptnr1_label_comp_id SEP _struct_conn.ptnr1_label_seq_id 169 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SEP _struct_conn.ptnr1_auth_seq_id 241 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id N _struct_conn.ptnr2_label_comp_id PHE _struct_conn.ptnr2_label_seq_id 170 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id PHE _struct_conn.ptnr2_auth_seq_id 242 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.329 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3NUY _atom_sites.fract_transf_matrix[1][1] 0.008084 _atom_sites.fract_transf_matrix[1][2] 0.004668 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009335 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021121 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 359 359 GOL GOL . C 2 GOL A 1 360 360 GOL GOL . D 2 GOL A 1 363 363 GOL GOL . E 2 GOL A 1 365 365 GOL GOL . F 3 SO4 A 1 366 366 SO4 SO4 . G 3 SO4 A 1 368 368 SO4 SO4 . H 3 SO4 A 1 369 369 SO4 SO4 . I 4 JPZ A 1 370 370 JPZ JPZ . J 5 HOH A 1 2 2 HOH HOH . J 5 HOH A 2 3 3 HOH HOH . J 5 HOH A 3 5 5 HOH HOH . J 5 HOH A 4 6 6 HOH HOH . J 5 HOH A 5 7 7 HOH HOH . J 5 HOH A 6 10 10 HOH HOH . J 5 HOH A 7 18 18 HOH HOH . J 5 HOH A 8 19 19 HOH HOH . J 5 HOH A 9 27 27 HOH HOH . J 5 HOH A 10 30 30 HOH HOH . J 5 HOH A 11 33 33 HOH HOH . J 5 HOH A 12 34 34 HOH HOH . J 5 HOH A 13 35 35 HOH HOH . J 5 HOH A 14 36 36 HOH HOH . J 5 HOH A 15 40 40 HOH HOH . J 5 HOH A 16 43 43 HOH HOH . J 5 HOH A 17 44 44 HOH HOH . J 5 HOH A 18 45 45 HOH HOH . J 5 HOH A 19 46 46 HOH HOH . J 5 HOH A 20 47 47 HOH HOH . J 5 HOH A 21 48 48 HOH HOH . J 5 HOH A 22 49 49 HOH HOH . J 5 HOH A 23 50 50 HOH HOH . J 5 HOH A 24 51 51 HOH HOH . J 5 HOH A 25 52 52 HOH HOH . J 5 HOH A 26 53 53 HOH HOH . J 5 HOH A 27 55 55 HOH HOH . J 5 HOH A 28 56 56 HOH HOH . J 5 HOH A 29 57 57 HOH HOH . J 5 HOH A 30 58 58 HOH HOH . J 5 HOH A 31 59 59 HOH HOH . J 5 HOH A 32 60 60 HOH HOH . J 5 HOH A 33 61 61 HOH HOH . J 5 HOH A 34 62 62 HOH HOH . J 5 HOH A 35 63 63 HOH HOH . J 5 HOH A 36 64 64 HOH HOH . J 5 HOH A 37 65 65 HOH HOH . J 5 HOH A 38 66 66 HOH HOH . J 5 HOH A 39 67 67 HOH HOH . J 5 HOH A 40 68 68 HOH HOH . J 5 HOH A 41 69 69 HOH HOH . J 5 HOH A 42 70 70 HOH HOH . J 5 HOH A 43 71 71 HOH HOH . J 5 HOH A 44 72 72 HOH HOH . J 5 HOH A 45 361 73 HOH HOH . J 5 HOH A 46 362 74 HOH HOH . J 5 HOH A 47 364 75 HOH HOH . J 5 HOH A 48 367 76 HOH HOH . J 5 HOH A 49 371 77 HOH HOH . J 5 HOH A 50 372 78 HOH HOH . J 5 HOH A 51 373 79 HOH HOH . J 5 HOH A 52 374 80 HOH HOH . J 5 HOH A 53 375 81 HOH HOH . J 5 HOH A 54 376 82 HOH HOH . J 5 HOH A 55 377 83 HOH HOH . J 5 HOH A 56 378 84 HOH HOH . J 5 HOH A 57 379 85 HOH HOH . J 5 HOH A 58 380 86 HOH HOH . J 5 HOH A 59 381 87 HOH HOH . J 5 HOH A 60 382 89 HOH HOH . J 5 HOH A 61 383 90 HOH HOH . J 5 HOH A 62 384 91 HOH HOH . J 5 HOH A 63 385 92 HOH HOH . J 5 HOH A 64 386 93 HOH HOH . J 5 HOH A 65 387 94 HOH HOH . J 5 HOH A 66 388 95 HOH HOH . J 5 HOH A 67 389 96 HOH HOH . J 5 HOH A 68 390 97 HOH HOH . J 5 HOH A 69 391 98 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 2 -37.911 5.28 -5.332 1 34.02 ? C1 GOL 365 A 1 HETATM 2 O O1 GOL . . . E 2 -36.649 4.659 -5.187 1 35.05 ? O1 GOL 365 A 1 HETATM 3 C C2 GOL . . . E 2 -37.921 6.193 -6.548 1 41.03 ? C2 GOL 365 A 1 HETATM 4 O O2 GOL . . . E 2 -36.746 6.194 -7.338 1 41.36 ? O2 GOL 365 A 1 HETATM 5 C C3 GOL . . . E 2 -39.201 6.105 -7.353 1 39.12 ? C3 GOL 365 A 1 HETATM 6 O O3 GOL . . . E 2 -40.032 7.037 -6.724 1 37.86 ? O3 GOL 365 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 224 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #