data_3NV5
#
_model_server_result.job_id            7pitMuOme2SMZW4GBojt8Q 
_model_server_result.datetime_utc      '2024-10-19 12:35:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3nv5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":419}' 
#
_entry.id    3NV5 
#
_exptl.entry_id    3NV5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              106.12 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DI(HYDROXYETHYL)ETHER 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3NV5 
_cell.length_a            86.653 
_cell.length_b            86.653 
_cell.length_c            124.705 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3NV5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 399 A CYS 364 1_555 B FE HEM . A HEM 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? 
metalc ? metalc2 B FE HEM . A HEM 418 1_555 E O HOH . A HOH 568 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? 
#
_chem_comp.formula           'C4 H10 O3' 
_chem_comp.formula_weight    106.12 
_chem_comp.id                PEG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DI(HYDROXYETHYL)ETHER 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PEG sing 319 n n 
C1 C2 PEG sing 320 n n 
C1 H11 PEG sing 321 n n 
C1 H12 PEG sing 322 n n 
O1 HO1 PEG sing 323 n n 
C2 O2 PEG sing 324 n n 
C2 H21 PEG sing 325 n n 
C2 H22 PEG sing 326 n n 
O2 C3 PEG sing 327 n n 
C3 C4 PEG sing 328 n n 
C3 H31 PEG sing 329 n n 
C3 H32 PEG sing 330 n n 
C4 O4 PEG sing 331 n n 
C4 H41 PEG sing 332 n n 
C4 H42 PEG sing 333 n n 
O4 HO4 PEG sing 334 n n 
#
_atom_sites.entry_id                     3NV5 
_atom_sites.fract_transf_matrix[1][1]    0.01154 
_atom_sites.fract_transf_matrix[1][2]    0.006663 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013326 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008019 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 418 417 HEM HEM . 
C 3 PEG A 1 419 418 PEG PEG . 
D 3 PEG A 1 420 419 PEG PEG . 
E 4 HOH A 1 421 421 HOH HOH . 
E 4 HOH A 2 422 422 HOH HOH . 
E 4 HOH A 3 423 423 HOH HOH . 
E 4 HOH A 4 424 424 HOH HOH . 
E 4 HOH A 5 425 425 HOH HOH . 
E 4 HOH A 6 426 426 HOH HOH . 
E 4 HOH A 7 427 427 HOH HOH . 
E 4 HOH A 8 428 428 HOH HOH . 
E 4 HOH A 9 429 429 HOH HOH . 
E 4 HOH A 10 430 430 HOH HOH . 
E 4 HOH A 11 431 431 HOH HOH . 
E 4 HOH A 12 432 432 HOH HOH . 
E 4 HOH A 13 433 433 HOH HOH . 
E 4 HOH A 14 434 434 HOH HOH . 
E 4 HOH A 15 435 435 HOH HOH . 
E 4 HOH A 16 436 436 HOH HOH . 
E 4 HOH A 17 437 437 HOH HOH . 
E 4 HOH A 18 438 438 HOH HOH . 
E 4 HOH A 19 439 439 HOH HOH . 
E 4 HOH A 20 440 440 HOH HOH . 
E 4 HOH A 21 441 441 HOH HOH . 
E 4 HOH A 22 442 442 HOH HOH . 
E 4 HOH A 23 443 443 HOH HOH . 
E 4 HOH A 24 444 444 HOH HOH . 
E 4 HOH A 25 445 445 HOH HOH . 
E 4 HOH A 26 446 446 HOH HOH . 
E 4 HOH A 27 447 447 HOH HOH . 
E 4 HOH A 28 448 448 HOH HOH . 
E 4 HOH A 29 449 449 HOH HOH . 
E 4 HOH A 30 450 450 HOH HOH . 
E 4 HOH A 31 451 451 HOH HOH . 
E 4 HOH A 32 452 452 HOH HOH . 
E 4 HOH A 33 453 453 HOH HOH . 
E 4 HOH A 34 454 454 HOH HOH . 
E 4 HOH A 35 455 455 HOH HOH . 
E 4 HOH A 36 456 456 HOH HOH . 
E 4 HOH A 37 457 457 HOH HOH . 
E 4 HOH A 38 458 458 HOH HOH . 
E 4 HOH A 39 459 459 HOH HOH . 
E 4 HOH A 40 460 460 HOH HOH . 
E 4 HOH A 41 461 461 HOH HOH . 
E 4 HOH A 42 462 462 HOH HOH . 
E 4 HOH A 43 463 463 HOH HOH . 
E 4 HOH A 44 464 464 HOH HOH . 
E 4 HOH A 45 465 465 HOH HOH . 
E 4 HOH A 46 466 466 HOH HOH . 
E 4 HOH A 47 467 467 HOH HOH . 
E 4 HOH A 48 468 468 HOH HOH . 
E 4 HOH A 49 469 469 HOH HOH . 
E 4 HOH A 50 470 470 HOH HOH . 
E 4 HOH A 51 471 471 HOH HOH . 
E 4 HOH A 52 472 472 HOH HOH . 
E 4 HOH A 53 473 473 HOH HOH . 
E 4 HOH A 54 474 474 HOH HOH . 
E 4 HOH A 55 475 475 HOH HOH . 
E 4 HOH A 56 476 476 HOH HOH . 
E 4 HOH A 57 477 477 HOH HOH . 
E 4 HOH A 58 478 478 HOH HOH . 
E 4 HOH A 59 479 479 HOH HOH . 
E 4 HOH A 60 480 480 HOH HOH . 
E 4 HOH A 61 481 481 HOH HOH . 
E 4 HOH A 62 482 482 HOH HOH . 
E 4 HOH A 63 483 483 HOH HOH . 
E 4 HOH A 64 484 484 HOH HOH . 
E 4 HOH A 65 485 485 HOH HOH . 
E 4 HOH A 66 486 486 HOH HOH . 
E 4 HOH A 67 487 487 HOH HOH . 
E 4 HOH A 68 488 488 HOH HOH . 
E 4 HOH A 69 489 489 HOH HOH . 
E 4 HOH A 70 490 490 HOH HOH . 
E 4 HOH A 71 491 491 HOH HOH . 
E 4 HOH A 72 492 492 HOH HOH . 
E 4 HOH A 73 493 493 HOH HOH . 
E 4 HOH A 74 494 494 HOH HOH . 
E 4 HOH A 75 495 495 HOH HOH . 
E 4 HOH A 76 496 496 HOH HOH . 
E 4 HOH A 77 497 497 HOH HOH . 
E 4 HOH A 78 498 498 HOH HOH . 
E 4 HOH A 79 499 499 HOH HOH . 
E 4 HOH A 80 500 500 HOH HOH . 
E 4 HOH A 81 501 501 HOH HOH . 
E 4 HOH A 82 502 502 HOH HOH . 
E 4 HOH A 83 503 503 HOH HOH . 
E 4 HOH A 84 504 504 HOH HOH . 
E 4 HOH A 85 505 505 HOH HOH . 
E 4 HOH A 86 506 506 HOH HOH . 
E 4 HOH A 87 507 507 HOH HOH . 
E 4 HOH A 88 508 508 HOH HOH . 
E 4 HOH A 89 509 509 HOH HOH . 
E 4 HOH A 90 510 510 HOH HOH . 
E 4 HOH A 91 511 511 HOH HOH . 
E 4 HOH A 92 512 512 HOH HOH . 
E 4 HOH A 93 513 513 HOH HOH . 
E 4 HOH A 94 514 514 HOH HOH . 
E 4 HOH A 95 515 515 HOH HOH . 
E 4 HOH A 96 516 516 HOH HOH . 
E 4 HOH A 97 517 517 HOH HOH . 
E 4 HOH A 98 518 518 HOH HOH . 
E 4 HOH A 99 519 519 HOH HOH . 
E 4 HOH A 100 520 520 HOH HOH . 
E 4 HOH A 101 521 521 HOH HOH . 
E 4 HOH A 102 522 522 HOH HOH . 
E 4 HOH A 103 523 523 HOH HOH . 
E 4 HOH A 104 524 524 HOH HOH . 
E 4 HOH A 105 525 525 HOH HOH . 
E 4 HOH A 106 526 526 HOH HOH . 
E 4 HOH A 107 527 527 HOH HOH . 
E 4 HOH A 108 528 528 HOH HOH . 
E 4 HOH A 109 529 529 HOH HOH . 
E 4 HOH A 110 530 530 HOH HOH . 
E 4 HOH A 111 531 531 HOH HOH . 
E 4 HOH A 112 532 532 HOH HOH . 
E 4 HOH A 113 533 533 HOH HOH . 
E 4 HOH A 114 534 534 HOH HOH . 
E 4 HOH A 115 535 535 HOH HOH . 
E 4 HOH A 116 536 536 HOH HOH . 
E 4 HOH A 117 537 537 HOH HOH . 
E 4 HOH A 118 538 538 HOH HOH . 
E 4 HOH A 119 539 539 HOH HOH . 
E 4 HOH A 120 540 540 HOH HOH . 
E 4 HOH A 121 541 541 HOH HOH . 
E 4 HOH A 122 542 542 HOH HOH . 
E 4 HOH A 123 543 543 HOH HOH . 
E 4 HOH A 124 544 544 HOH HOH . 
E 4 HOH A 125 545 545 HOH HOH . 
E 4 HOH A 126 546 546 HOH HOH . 
E 4 HOH A 127 547 547 HOH HOH . 
E 4 HOH A 128 548 548 HOH HOH . 
E 4 HOH A 129 549 549 HOH HOH . 
E 4 HOH A 130 550 550 HOH HOH . 
E 4 HOH A 131 551 551 HOH HOH . 
E 4 HOH A 132 552 552 HOH HOH . 
E 4 HOH A 133 553 553 HOH HOH . 
E 4 HOH A 134 554 554 HOH HOH . 
E 4 HOH A 135 555 555 HOH HOH . 
E 4 HOH A 136 556 556 HOH HOH . 
E 4 HOH A 137 557 557 HOH HOH . 
E 4 HOH A 138 558 558 HOH HOH . 
E 4 HOH A 139 559 559 HOH HOH . 
E 4 HOH A 140 560 560 HOH HOH . 
E 4 HOH A 141 561 561 HOH HOH . 
E 4 HOH A 142 562 562 HOH HOH . 
E 4 HOH A 143 563 563 HOH HOH . 
E 4 HOH A 144 564 564 HOH HOH . 
E 4 HOH A 145 565 565 HOH HOH . 
E 4 HOH A 146 566 566 HOH HOH . 
E 4 HOH A 147 567 567 HOH HOH . 
E 4 HOH A 148 568 568 HOH HOH . 
E 4 HOH A 149 569 420 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PEG . . . C 3 22.51 -16.073 -8.221 1 55.86 ? C1 PEG 419 A 1 
HETATM 2 O O1 PEG . . . C 3 23.564 -15.979 -7.254 1 57.21 ? O1 PEG 419 A 1 
HETATM 3 C C2 PEG . . . C 3 22.532 -17.468 -8.827 1 53.33 ? C2 PEG 419 A 1 
HETATM 4 O O2 PEG . . . C 3 21.638 -18.292 -8.088 1 52.92 ? O2 PEG 419 A 1 
HETATM 5 C C3 PEG . . . C 3 22.319 -19.291 -7.325 1 51.9 ? C3 PEG 419 A 1 
HETATM 6 C C4 PEG . . . C 3 21.562 -19.615 -6.047 1 50.56 ? C4 PEG 419 A 1 
HETATM 7 O O4 PEG . . . C 3 21.743 -18.547 -5.111 1 49.54 ? O4 PEG 419 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    40 
_model_server_stats.query_time_ms           344 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           7 
#