data_3NVC # _model_server_result.job_id aNZx4C1Pj7ZEk6Dn_P1gQg _model_server_result.datetime_utc '2024-11-02 13:29:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nvc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":371}' # _entry.id 3NVC # _exptl.entry_id 3NVC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3NVC _cell.length_a 74.273 _cell.length_b 86.977 _cell.length_c 167.626 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NVC _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 86.977 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_565 x,-y+1,-z 1 0 0 0 -1 0 0 0 -1 0 86.977 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 119 A HIS 119 1_555 B FE FE2 . A FE2 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc2 A NE2 HIS 121 A HIS 121 1_555 B FE FE2 . A FE2 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc3 A NE2 HIS 160 A HIS 160 1_555 B FE FE2 . A FE2 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc4 B FE FE2 . A FE2 369 1_555 C O2' SAL . A SAL 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc5 B FE FE2 . A FE2 369 1_555 C O1' SAL . A SAL 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3NVC _atom_sites.fract_transf_matrix[1][1] 0.013464 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011497 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005966 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE2 A 1 369 368 FE2 FE2 . C 3 SAL A 1 370 1 SAL SAL . D 4 GOL A 1 371 1 GOL GOL . E 4 GOL A 1 372 1 GOL GOL . F 4 GOL A 1 373 1 GOL GOL . G 5 HOH A 1 374 1 HOH HOH . G 5 HOH A 2 375 2 HOH HOH . G 5 HOH A 3 376 3 HOH HOH . G 5 HOH A 4 377 4 HOH HOH . G 5 HOH A 5 378 5 HOH HOH . G 5 HOH A 6 379 6 HOH HOH . G 5 HOH A 7 380 7 HOH HOH . G 5 HOH A 8 381 8 HOH HOH . G 5 HOH A 9 382 9 HOH HOH . G 5 HOH A 10 383 10 HOH HOH . G 5 HOH A 11 384 11 HOH HOH . G 5 HOH A 12 385 12 HOH HOH . G 5 HOH A 13 386 13 HOH HOH . G 5 HOH A 14 387 14 HOH HOH . G 5 HOH A 15 388 15 HOH HOH . G 5 HOH A 16 389 16 HOH HOH . G 5 HOH A 17 390 17 HOH HOH . G 5 HOH A 18 391 18 HOH HOH . G 5 HOH A 19 392 19 HOH HOH . G 5 HOH A 20 393 20 HOH HOH . G 5 HOH A 21 394 21 HOH HOH . G 5 HOH A 22 395 22 HOH HOH . G 5 HOH A 23 396 23 HOH HOH . G 5 HOH A 24 397 24 HOH HOH . G 5 HOH A 25 398 25 HOH HOH . G 5 HOH A 26 399 26 HOH HOH . G 5 HOH A 27 400 27 HOH HOH . G 5 HOH A 28 401 28 HOH HOH . G 5 HOH A 29 402 29 HOH HOH . G 5 HOH A 30 403 30 HOH HOH . G 5 HOH A 31 404 31 HOH HOH . G 5 HOH A 32 405 32 HOH HOH . G 5 HOH A 33 406 33 HOH HOH . G 5 HOH A 34 407 34 HOH HOH . G 5 HOH A 35 408 35 HOH HOH . G 5 HOH A 36 409 36 HOH HOH . G 5 HOH A 37 410 37 HOH HOH . G 5 HOH A 38 411 38 HOH HOH . G 5 HOH A 39 412 39 HOH HOH . G 5 HOH A 40 413 40 HOH HOH . G 5 HOH A 41 414 41 HOH HOH . G 5 HOH A 42 415 42 HOH HOH . G 5 HOH A 43 416 43 HOH HOH . G 5 HOH A 44 417 44 HOH HOH . G 5 HOH A 45 418 45 HOH HOH . G 5 HOH A 46 419 46 HOH HOH . G 5 HOH A 47 420 47 HOH HOH . G 5 HOH A 48 421 48 HOH HOH . G 5 HOH A 49 422 49 HOH HOH . G 5 HOH A 50 423 50 HOH HOH . G 5 HOH A 51 424 51 HOH HOH . G 5 HOH A 52 425 52 HOH HOH . G 5 HOH A 53 426 53 HOH HOH . G 5 HOH A 54 427 54 HOH HOH . G 5 HOH A 55 428 55 HOH HOH . G 5 HOH A 56 429 56 HOH HOH . G 5 HOH A 57 430 57 HOH HOH . G 5 HOH A 58 431 58 HOH HOH . G 5 HOH A 59 432 59 HOH HOH . G 5 HOH A 60 433 60 HOH HOH . G 5 HOH A 61 434 61 HOH HOH . G 5 HOH A 62 435 62 HOH HOH . G 5 HOH A 63 436 63 HOH HOH . G 5 HOH A 64 437 64 HOH HOH . G 5 HOH A 65 438 65 HOH HOH . G 5 HOH A 66 439 66 HOH HOH . G 5 HOH A 67 440 67 HOH HOH . G 5 HOH A 68 441 68 HOH HOH . G 5 HOH A 69 442 69 HOH HOH . G 5 HOH A 70 443 70 HOH HOH . G 5 HOH A 71 444 71 HOH HOH . G 5 HOH A 72 445 72 HOH HOH . G 5 HOH A 73 446 73 HOH HOH . G 5 HOH A 74 447 74 HOH HOH . G 5 HOH A 75 448 75 HOH HOH . G 5 HOH A 76 449 76 HOH HOH . G 5 HOH A 77 450 77 HOH HOH . G 5 HOH A 78 451 78 HOH HOH . G 5 HOH A 79 452 79 HOH HOH . G 5 HOH A 80 453 80 HOH HOH . G 5 HOH A 81 454 81 HOH HOH . G 5 HOH A 82 455 82 HOH HOH . G 5 HOH A 83 456 83 HOH HOH . G 5 HOH A 84 457 84 HOH HOH . G 5 HOH A 85 458 85 HOH HOH . G 5 HOH A 86 459 86 HOH HOH . G 5 HOH A 87 460 87 HOH HOH . G 5 HOH A 88 461 88 HOH HOH . G 5 HOH A 89 462 89 HOH HOH . G 5 HOH A 90 463 90 HOH HOH . G 5 HOH A 91 464 91 HOH HOH . G 5 HOH A 92 465 92 HOH HOH . G 5 HOH A 93 466 93 HOH HOH . G 5 HOH A 94 467 94 HOH HOH . G 5 HOH A 95 468 95 HOH HOH . G 5 HOH A 96 469 96 HOH HOH . G 5 HOH A 97 470 97 HOH HOH . G 5 HOH A 98 471 98 HOH HOH . G 5 HOH A 99 472 99 HOH HOH . G 5 HOH A 100 473 100 HOH HOH . G 5 HOH A 101 474 101 HOH HOH . G 5 HOH A 102 475 102 HOH HOH . G 5 HOH A 103 476 103 HOH HOH . G 5 HOH A 104 477 104 HOH HOH . G 5 HOH A 105 478 105 HOH HOH . G 5 HOH A 106 479 106 HOH HOH . G 5 HOH A 107 480 107 HOH HOH . G 5 HOH A 108 481 108 HOH HOH . G 5 HOH A 109 482 109 HOH HOH . G 5 HOH A 110 483 110 HOH HOH . G 5 HOH A 111 484 111 HOH HOH . G 5 HOH A 112 485 112 HOH HOH . G 5 HOH A 113 486 113 HOH HOH . G 5 HOH A 114 487 114 HOH HOH . G 5 HOH A 115 488 115 HOH HOH . G 5 HOH A 116 489 116 HOH HOH . G 5 HOH A 117 490 117 HOH HOH . G 5 HOH A 118 491 118 HOH HOH . G 5 HOH A 119 492 119 HOH HOH . G 5 HOH A 120 493 120 HOH HOH . G 5 HOH A 121 494 121 HOH HOH . G 5 HOH A 122 495 122 HOH HOH . G 5 HOH A 123 496 123 HOH HOH . G 5 HOH A 124 497 124 HOH HOH . G 5 HOH A 125 498 125 HOH HOH . G 5 HOH A 126 499 126 HOH HOH . G 5 HOH A 127 500 127 HOH HOH . G 5 HOH A 128 501 128 HOH HOH . G 5 HOH A 129 502 129 HOH HOH . G 5 HOH A 130 503 130 HOH HOH . G 5 HOH A 131 504 131 HOH HOH . G 5 HOH A 132 505 132 HOH HOH . G 5 HOH A 133 506 133 HOH HOH . G 5 HOH A 134 507 134 HOH HOH . G 5 HOH A 135 508 135 HOH HOH . G 5 HOH A 136 509 136 HOH HOH . G 5 HOH A 137 510 137 HOH HOH . G 5 HOH A 138 511 138 HOH HOH . G 5 HOH A 139 512 139 HOH HOH . G 5 HOH A 140 513 140 HOH HOH . G 5 HOH A 141 514 141 HOH HOH . G 5 HOH A 142 515 142 HOH HOH . G 5 HOH A 143 516 143 HOH HOH . G 5 HOH A 144 517 144 HOH HOH . G 5 HOH A 145 518 145 HOH HOH . G 5 HOH A 146 519 146 HOH HOH . G 5 HOH A 147 520 147 HOH HOH . G 5 HOH A 148 521 148 HOH HOH . G 5 HOH A 149 522 149 HOH HOH . G 5 HOH A 150 523 150 HOH HOH . G 5 HOH A 151 524 151 HOH HOH . G 5 HOH A 152 525 152 HOH HOH . G 5 HOH A 153 526 153 HOH HOH . G 5 HOH A 154 527 154 HOH HOH . G 5 HOH A 155 528 155 HOH HOH . G 5 HOH A 156 529 156 HOH HOH . G 5 HOH A 157 530 157 HOH HOH . G 5 HOH A 158 531 158 HOH HOH . G 5 HOH A 159 532 159 HOH HOH . G 5 HOH A 160 533 160 HOH HOH . G 5 HOH A 161 534 161 HOH HOH . G 5 HOH A 162 535 162 HOH HOH . G 5 HOH A 163 536 163 HOH HOH . G 5 HOH A 164 537 164 HOH HOH . G 5 HOH A 165 538 165 HOH HOH . G 5 HOH A 166 539 166 HOH HOH . G 5 HOH A 167 540 167 HOH HOH . G 5 HOH A 168 541 168 HOH HOH . G 5 HOH A 169 542 169 HOH HOH . G 5 HOH A 170 543 170 HOH HOH . G 5 HOH A 171 544 171 HOH HOH . G 5 HOH A 172 545 172 HOH HOH . G 5 HOH A 173 546 173 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 12.056 30.457 12.201 1 40.85 ? C1 GOL 371 A 1 HETATM 2 O O1 GOL . . . D 4 11.636 30.54 13.527 1 34.16 ? O1 GOL 371 A 1 HETATM 3 C C2 GOL . . . D 4 13.538 30.202 12.342 1 43.86 ? C2 GOL 371 A 1 HETATM 4 O O2 GOL . . . D 4 14.197 30.309 11.056 1 43.24 ? O2 GOL 371 A 1 HETATM 5 C C3 GOL . . . D 4 13.976 31.188 13.447 1 45 ? C3 GOL 371 A 1 HETATM 6 O O3 GOL . . . D 4 13.714 30.682 14.768 1 41.96 ? O3 GOL 371 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #