data_3NVF # _model_server_result.job_id 0-7s7f3ROblC6mt6G--w9w _model_server_result.datetime_utc '2024-11-23 05:16:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nvf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":7}' # _entry.id 3NVF # _exptl.entry_id 3NVF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3NVF _cell.length_a 27.546 _cell.length_b 31.017 _cell.length_c 4.804 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NVF _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_557 x,y,z+2 1 0 0 0 1 0 0 0 1 0 0 9.608 3 'crystal symmetry operation' 1_556 x,y,z+1 1 0 0 0 1 0 0 0 1 0 0 4.804 4 'crystal symmetry operation' 1_554 x,y,z-1 1 0 0 0 1 0 0 0 1 0 0 -4.804 5 'crystal symmetry operation' 1_553 x,y,z-2 1 0 0 0 1 0 0 0 1 0 0 -9.608 6 'crystal symmetry operation' 2_657 -x+1,-y,z+2 -1 0 0 0 -1 0 0 0 1 27.546 0 9.608 7 'crystal symmetry operation' 2_656 -x+1,-y,z+1 -1 0 0 0 -1 0 0 0 1 27.546 0 4.804 8 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 27.546 0 0 9 'crystal symmetry operation' 2_654 -x+1,-y,z-1 -1 0 0 0 -1 0 0 0 1 27.546 0 -4.804 10 'crystal symmetry operation' 2_653 -x+1,-y,z-2 -1 0 0 0 -1 0 0 0 1 27.546 0 -9.608 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 52 n n C1 H11 MPD sing 53 n n C1 H12 MPD sing 54 n n C1 H13 MPD sing 55 n n C2 O2 MPD sing 56 n n C2 CM MPD sing 57 n n C2 C3 MPD sing 58 n n O2 HO2 MPD sing 59 n n CM HM1 MPD sing 60 n n CM HM2 MPD sing 61 n n CM HM3 MPD sing 62 n n C3 C4 MPD sing 63 n n C3 H31 MPD sing 64 n n C3 H32 MPD sing 65 n n C4 O4 MPD sing 66 n n C4 C5 MPD sing 67 n n C4 H4 MPD sing 68 n n O4 HO4 MPD sing 69 n n C5 H51 MPD sing 70 n n C5 H52 MPD sing 71 n n C5 H53 MPD sing 72 n n # _atom_sites.entry_id 3NVF _atom_sites.fract_transf_matrix[1][1] 0.036303 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.03224 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.20816 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id MPD _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 7 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id MPD _pdbx_nonpoly_scheme.auth_mon_id MPD _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . B 2 4.495 -8.174 -1.94 1 52.17 ? C1 MPD 7 A 1 HETATM 2 C C2 MPD . . . B 2 4.36 -8.256 -3.445 1 51.81 ? C2 MPD 7 A 1 HETATM 3 O O2 MPD . . . B 2 3.776 -7.016 -3.921 1 51.08 ? O2 MPD 7 A 1 HETATM 4 C CM MPD . . . B 2 5.759 -8.409 -4.028 1 51.56 ? CM MPD 7 A 1 HETATM 5 C C3 MPD . . . B 2 3.501 -9.464 -3.828 1 52.22 ? C3 MPD 7 A 1 HETATM 6 C C4 MPD . . . B 2 1.977 -9.352 -3.653 1 52.51 ? C4 MPD 7 A 1 HETATM 7 O O4 MPD . . . B 2 1.528 -8.09 -3.199 1 52.98 ? O4 MPD 7 A 1 HETATM 8 C C5 MPD . . . B 2 1.281 -9.668 -4.976 1 52.46 ? C5 MPD 7 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 4 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 223 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #