data_3NVJ
#
_model_server_result.job_id            WDpgXhWdpcFd1uHjMkurmA 
_model_server_result.datetime_utc      '2024-12-02 08:13:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3nvj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1}' 
#
_entry.id    3NVJ 
#
_exptl.entry_id    3NVJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3NVJ 
_cell.length_a            107.22 
_cell.length_b            107.22 
_cell.length_c            124.227 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3NVJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        171 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 62' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 52 A CYS 90 1_555 A SG CYS 311 A CYS 349 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf2 A SG CYS 62 A CYS 100 1_555 A SG CYS 67 A CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 A SG CYS 112 A CYS 150 1_555 A SG CYS 257 A CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf4 A SG CYS 314 A CYS 352 1_555 A SG CYS 317 A CYS 355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 83 n n 
PA O2A FAD sing 84 n n 
PA O5B FAD sing 85 n n 
PA O3P FAD sing 86 n n 
O2A HOA2 FAD sing 87 n n 
O5B C5B FAD sing 88 n n 
C5B C4B FAD sing 89 n n 
C5B H51A FAD sing 90 n n 
C5B H52A FAD sing 91 n n 
C4B O4B FAD sing 92 n n 
C4B C3B FAD sing 93 n n 
C4B H4B FAD sing 94 n n 
O4B C1B FAD sing 95 n n 
C3B O3B FAD sing 96 n n 
C3B C2B FAD sing 97 n n 
C3B H3B FAD sing 98 n n 
O3B HO3A FAD sing 99 n n 
C2B O2B FAD sing 100 n n 
C2B C1B FAD sing 101 n n 
C2B H2B FAD sing 102 n n 
O2B HO2A FAD sing 103 n n 
C1B N9A FAD sing 104 n n 
C1B H1B FAD sing 105 n n 
N9A C8A FAD sing 106 n y 
N9A C4A FAD sing 107 n y 
C8A N7A FAD doub 108 n y 
C8A H8A FAD sing 109 n n 
N7A C5A FAD sing 110 n y 
C5A C6A FAD sing 111 n y 
C5A C4A FAD doub 112 n y 
C6A N6A FAD sing 113 n n 
C6A N1A FAD doub 114 n y 
N6A H61A FAD sing 115 n n 
N6A H62A FAD sing 116 n n 
N1A C2A FAD sing 117 n y 
C2A N3A FAD doub 118 n y 
C2A H2A FAD sing 119 n n 
N3A C4A FAD sing 120 n y 
N1 C2 FAD sing 121 n n 
N1 C10 FAD doub 122 n n 
C2 O2 FAD doub 123 n n 
C2 N3 FAD sing 124 n n 
N3 C4 FAD sing 125 n n 
N3 HN3 FAD sing 126 n n 
C4 O4 FAD doub 127 n n 
C4 C4X FAD sing 128 n n 
C4X N5 FAD doub 129 n n 
C4X C10 FAD sing 130 n n 
N5 C5X FAD sing 131 n n 
C5X C6 FAD doub 132 n y 
C5X C9A FAD sing 133 n y 
C6 C7 FAD sing 134 n y 
C6 H6 FAD sing 135 n n 
C7 C7M FAD sing 136 n n 
C7 C8 FAD doub 137 n y 
C7M HM71 FAD sing 138 n n 
C7M HM72 FAD sing 139 n n 
C7M HM73 FAD sing 140 n n 
C8 C8M FAD sing 141 n n 
C8 C9 FAD sing 142 n y 
C8M HM81 FAD sing 143 n n 
C8M HM82 FAD sing 144 n n 
C8M HM83 FAD sing 145 n n 
C9 C9A FAD doub 146 n y 
C9 H9 FAD sing 147 n n 
C9A N10 FAD sing 148 n n 
N10 C10 FAD sing 149 n n 
N10 C1' FAD sing 150 n n 
C1' C2' FAD sing 151 n n 
C1' "H1'1" FAD sing 152 n n 
C1' "H1'2" FAD sing 153 n n 
C2' O2' FAD sing 154 n n 
C2' C3' FAD sing 155 n n 
C2' H2' FAD sing 156 n n 
O2' HO2' FAD sing 157 n n 
C3' O3' FAD sing 158 n n 
C3' C4' FAD sing 159 n n 
C3' H3' FAD sing 160 n n 
O3' HO3' FAD sing 161 n n 
C4' O4' FAD sing 162 n n 
C4' C5' FAD sing 163 n n 
C4' H4' FAD sing 164 n n 
O4' HO4' FAD sing 165 n n 
C5' O5' FAD sing 166 n n 
C5' "H5'1" FAD sing 167 n n 
C5' "H5'2" FAD sing 168 n n 
O5' P FAD sing 169 n n 
P O1P FAD doub 170 n n 
P O2P FAD sing 171 n n 
P O3P FAD sing 172 n n 
O2P HOP2 FAD sing 173 n n 
#
_atom_sites.entry_id                     3NVJ 
_atom_sites.fract_transf_matrix[1][1]    0.009327 
_atom_sites.fract_transf_matrix[1][2]    0.005385 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010769 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00805 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NEN A 1 501 501 NEN NEN . 
C 3 FAD A 1 1 1 FAD FAD . 
D 4 CD A 1 432 432 CD CD . 
E 5 HOH A 1 2 2 HOH HOH . 
E 5 HOH A 2 3 3 HOH HOH . 
E 5 HOH A 3 4 4 HOH HOH . 
E 5 HOH A 4 5 5 HOH HOH . 
E 5 HOH A 5 6 6 HOH HOH . 
E 5 HOH A 6 7 7 HOH HOH . 
E 5 HOH A 7 8 8 HOH HOH . 
E 5 HOH A 8 9 9 HOH HOH . 
E 5 HOH A 9 10 10 HOH HOH . 
E 5 HOH A 10 11 11 HOH HOH . 
E 5 HOH A 11 12 12 HOH HOH . 
E 5 HOH A 12 433 433 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . C 3 56.413 -5.705 -11.892 1 68.12 ? PA FAD 1 A 1 
HETATM 2 O O1A FAD . . . C 3 55.687 -6.989 -11.775 1 68.64 ? O1A FAD 1 A 1 
HETATM 3 O O2A FAD . . . C 3 57.726 -5.295 -11.302 1 64.59 ? O2A FAD 1 A 1 
HETATM 4 O O5B FAD . . . C 3 55.329 -4.617 -11.554 1 65.97 ? O5B FAD 1 A 1 
HETATM 5 C C5B FAD . . . C 3 53.897 -4.719 -11.564 1 63.63 ? C5B FAD 1 A 1 
HETATM 6 C C4B FAD . . . C 3 53.382 -3.381 -11.068 1 61.11 ? C4B FAD 1 A 1 
HETATM 7 O O4B FAD . . . C 3 53.209 -3.73 -9.665 1 59.08 ? O4B FAD 1 A 1 
HETATM 8 C C3B FAD . . . C 3 54.1 -2.015 -11.05 1 59.85 ? C3B FAD 1 A 1 
HETATM 9 O O3B FAD . . . C 3 52.998 -1.098 -11.051 1 58.67 ? O3B FAD 1 A 1 
HETATM 10 C C2B FAD . . . C 3 54.854 -1.962 -9.794 1 57.42 ? C2B FAD 1 A 1 
HETATM 11 O O2B FAD . . . C 3 54.937 -0.665 -9.292 1 53.13 ? O2B FAD 1 A 1 
HETATM 12 C C1B FAD . . . C 3 54.055 -2.882 -8.861 1 56.06 ? C1B FAD 1 A 1 
HETATM 13 N N9A FAD . . . C 3 54.823 -3.742 -8.012 1 53.84 ? N9A FAD 1 A 1 
HETATM 14 C C8A FAD . . . C 3 56.062 -4.425 -8.172 1 54.18 ? C8A FAD 1 A 1 
HETATM 15 N N7A FAD . . . C 3 56.49 -5.145 -7.181 1 52.58 ? N7A FAD 1 A 1 
HETATM 16 C C5A FAD . . . C 3 55.52 -4.929 -6.204 1 50.53 ? C5A FAD 1 A 1 
HETATM 17 C C6A FAD . . . C 3 55.315 -5.372 -4.877 1 50.14 ? C6A FAD 1 A 1 
HETATM 18 N N6A FAD . . . C 3 56.153 -6.246 -4.298 1 49.99 ? N6A FAD 1 A 1 
HETATM 19 N N1A FAD . . . C 3 54.244 -4.899 -4.143 1 49.79 ? N1A FAD 1 A 1 
HETATM 20 C C2A FAD . . . C 3 53.29 -4.043 -4.602 1 50.77 ? C2A FAD 1 A 1 
HETATM 21 N N3A FAD . . . C 3 53.474 -3.66 -5.945 1 50.09 ? N3A FAD 1 A 1 
HETATM 22 C C4A FAD . . . C 3 54.596 -4.118 -6.69 1 51.01 ? C4A FAD 1 A 1 
HETATM 23 N N1 FAD . . . C 3 60.017 -13.041 -13.851 1 57.68 ? N1 FAD 1 A 1 
HETATM 24 C C2 FAD . . . C 3 61.282 -13.582 -13.801 1 55.8 ? C2 FAD 1 A 1 
HETATM 25 O O2 FAD . . . C 3 62.194 -13.022 -14.417 1 57.25 ? O2 FAD 1 A 1 
HETATM 26 N N3 FAD . . . C 3 61.325 -14.742 -13.047 1 53.79 ? N3 FAD 1 A 1 
HETATM 27 C C4 FAD . . . C 3 60.244 -15.354 -12.382 1 54.73 ? C4 FAD 1 A 1 
HETATM 28 O O4 FAD . . . C 3 60.469 -16.41 -11.708 1 52.24 ? O4 FAD 1 A 1 
HETATM 29 C C4X FAD . . . C 3 59.006 -14.765 -12.482 1 55.57 ? C4X FAD 1 A 1 
HETATM 30 N N5 FAD . . . C 3 57.83 -15.314 -11.886 1 53.77 ? N5 FAD 1 A 1 
HETATM 31 C C5X FAD . . . C 3 56.529 -14.755 -12 1 54.11 ? C5X FAD 1 A 1 
HETATM 32 C C6 FAD . . . C 3 55.448 -15.405 -11.376 1 53.61 ? C6 FAD 1 A 1 
HETATM 33 C C7 FAD . . . C 3 54.172 -14.779 -11.454 1 53.83 ? C7 FAD 1 A 1 
HETATM 34 C C7M FAD . . . C 3 53.096 -15.574 -10.72 1 51.67 ? C7M FAD 1 A 1 
HETATM 35 C C8 FAD . . . C 3 53.914 -13.609 -12.224 1 54.72 ? C8 FAD 1 A 1 
HETATM 36 C C8M FAD . . . C 3 52.591 -12.917 -12.5 1 55.79 ? C8M FAD 1 A 1 
HETATM 37 C C9 FAD . . . C 3 55.004 -13.009 -12.856 1 55.34 ? C9 FAD 1 A 1 
HETATM 38 C C9A FAD . . . C 3 56.333 -13.498 -12.763 1 55.24 ? C9A FAD 1 A 1 
HETATM 39 N N10 FAD . . . C 3 57.65 -13.017 -13.234 1 57.93 ? N10 FAD 1 A 1 
HETATM 40 C C10 FAD . . . C 3 58.903 -13.564 -13.248 1 57.51 ? C10 FAD 1 A 1 
HETATM 41 C C1' FAD . . . C 3 57.624 -11.663 -13.697 1 60.41 ? C1' FAD 1 A 1 
HETATM 42 C C2' FAD . . . C 3 57.865 -10.482 -12.802 1 61.46 ? C2' FAD 1 A 1 
HETATM 43 O O2' FAD . . . C 3 57.062 -10.666 -11.607 1 60.56 ? O2' FAD 1 A 1 
HETATM 44 C C3' FAD . . . C 3 57.6 -9.141 -13.416 1 62.27 ? C3' FAD 1 A 1 
HETATM 45 O O3' FAD . . . C 3 56.245 -8.913 -13.773 1 63.63 ? O3' FAD 1 A 1 
HETATM 46 C C4' FAD . . . C 3 58.592 -8.68 -14.469 1 62.64 ? C4' FAD 1 A 1 
HETATM 47 O O4' FAD . . . C 3 60.002 -8.844 -14.147 1 63.21 ? O4' FAD 1 A 1 
HETATM 48 C C5' FAD . . . C 3 58.368 -7.467 -15.26 1 64.37 ? C5' FAD 1 A 1 
HETATM 49 O O5' FAD . . . C 3 58.424 -6.386 -14.329 1 65.47 ? O5' FAD 1 A 1 
HETATM 50 P P FAD . . . C 3 57.674 -5.029 -14.457 1 70.21 ? P FAD 1 A 1 
HETATM 51 O O1P FAD . . . C 3 58.549 -3.983 -13.961 1 70.96 ? O1P FAD 1 A 1 
HETATM 52 O O2P FAD . . . C 3 56.993 -4.945 -15.778 1 71.8 ? O2P FAD 1 A 1 
HETATM 53 O O3P FAD . . . C 3 56.478 -5.16 -13.39 1 69.86 ? O3P FAD 1 A 1 
#
_model_server_stats.io_time_ms              5 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           255 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           53 
#