data_3NVL # _model_server_result.job_id AfSy_OSOL92j0iNLMyCwdw _model_server_result.datetime_utc '2024-11-05 00:18:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nvl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":553}' # _entry.id 3NVL # _exptl.entry_id 3NVL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.933 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COBALT (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.2 _cell.angle_gamma 90 _cell.entry_id 3NVL _cell.length_a 62.67 _cell.length_b 85.66 _cell.length_c 109.11 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NVL _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 42 A ASP 22 1_555 D CO CO . A CO 553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.937 ? metalc ? metalc2 A OD2 ASP 42 A ASP 22 1_555 D CO CO . A CO 553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.733 ? metalc ? metalc3 A OG SER 94 A SER 74 1_555 D CO CO . A CO 553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc4 A OD1 ASP 339 A ASP 319 1_555 E CO CO . A CO 554 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.758 ? metalc ? metalc5 A OD2 ASP 339 A ASP 319 1_555 E CO CO . A CO 554 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? metalc ? metalc6 A OD1 ASP 444 A ASP 424 1_555 E CO CO . A CO 554 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.764 ? metalc ? metalc7 A OD2 ASP 444 A ASP 424 1_555 E CO CO . A CO 554 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc8 A NE2 HIS 448 A HIS 428 1_555 E CO CO . A CO 554 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc9 A OD2 ASP 485 A ASP 465 1_555 D CO CO . A CO 553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc10 A NE2 HIS 486 A HIS 466 1_555 D CO CO . A CO 553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc11 A NE2 HIS 515 A HIS 495 1_555 E CO CO . A CO 554 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc12 E CO CO . A CO 554 1_555 I O HOH . A HOH 695 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? metalc ? metalc13 B OD1 ASP 42 B ASP 22 1_555 G CO CO . B CO 553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc14 B OD2 ASP 42 B ASP 22 1_555 G CO CO . B CO 553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.698 ? metalc ? metalc15 B OG SER 94 B SER 74 1_555 G CO CO . B CO 553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? metalc ? metalc16 B OD1 ASP 339 B ASP 319 1_555 H CO CO . B CO 554 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc17 B OD2 ASP 339 B ASP 319 1_555 H CO CO . B CO 554 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? metalc ? metalc18 B OD2 ASP 444 B ASP 424 1_555 H CO CO . B CO 554 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc19 B NE2 HIS 448 B HIS 428 1_555 H CO CO . B CO 554 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc20 B OD1 ASP 485 B ASP 465 1_555 G CO CO . B CO 553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc21 B NE2 HIS 486 B HIS 466 1_555 G CO CO . B CO 553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc22 B NE2 HIS 515 B HIS 495 1_555 H CO CO . B CO 554 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? # _chem_comp.formula 'Co 2' _chem_comp.formula_weight 58.933 _chem_comp.id CO _chem_comp.mon_nstd_flag . _chem_comp.name 'COBALT (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3NVL _atom_sites.fract_transf_matrix[1][1] 0.015957 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00345 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011674 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009377 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 552 552 SO4 SO4 . D 3 CO A 1 553 553 CO CO . E 3 CO A 1 554 554 CO CO . F 2 SO4 B 1 552 552 SO4 SO4 . G 3 CO B 1 553 553 CO CO . H 3 CO B 1 554 554 CO CO . I 4 HOH A 1 555 555 HOH HOH . I 4 HOH A 2 556 556 HOH HOH . I 4 HOH A 3 557 557 HOH HOH . I 4 HOH A 4 558 558 HOH HOH . I 4 HOH A 5 559 559 HOH HOH . I 4 HOH A 6 560 560 HOH HOH . I 4 HOH A 7 561 561 HOH HOH . I 4 HOH A 8 562 562 HOH HOH . I 4 HOH A 9 563 563 HOH HOH . I 4 HOH A 10 564 564 HOH HOH . I 4 HOH A 11 565 565 HOH HOH . I 4 HOH A 12 566 566 HOH HOH . I 4 HOH A 13 567 567 HOH HOH . I 4 HOH A 14 568 568 HOH HOH . I 4 HOH A 15 569 569 HOH HOH . I 4 HOH A 16 570 570 HOH HOH . I 4 HOH A 17 571 571 HOH HOH . I 4 HOH A 18 572 572 HOH HOH . I 4 HOH A 19 573 573 HOH HOH . I 4 HOH A 20 574 574 HOH HOH . I 4 HOH A 21 575 575 HOH HOH . I 4 HOH A 22 576 576 HOH HOH . I 4 HOH A 23 577 577 HOH HOH . I 4 HOH A 24 578 578 HOH HOH . I 4 HOH A 25 579 579 HOH HOH . I 4 HOH A 26 580 580 HOH HOH . I 4 HOH A 27 581 581 HOH HOH . I 4 HOH A 28 582 582 HOH HOH . I 4 HOH A 29 583 583 HOH HOH . I 4 HOH A 30 584 584 HOH HOH . I 4 HOH A 31 585 585 HOH HOH . I 4 HOH A 32 586 586 HOH HOH . I 4 HOH A 33 587 587 HOH HOH . I 4 HOH A 34 588 588 HOH HOH . I 4 HOH A 35 589 589 HOH HOH . I 4 HOH A 36 590 590 HOH HOH . I 4 HOH A 37 591 591 HOH HOH . I 4 HOH A 38 592 592 HOH HOH . I 4 HOH A 39 593 593 HOH HOH . I 4 HOH A 40 594 594 HOH HOH . I 4 HOH A 41 595 595 HOH HOH . I 4 HOH A 42 596 596 HOH HOH . I 4 HOH A 43 597 597 HOH HOH . I 4 HOH A 44 598 598 HOH HOH . I 4 HOH A 45 599 599 HOH HOH . I 4 HOH A 46 600 600 HOH HOH . I 4 HOH A 47 601 601 HOH HOH . I 4 HOH A 48 602 602 HOH HOH . I 4 HOH A 49 603 603 HOH HOH . I 4 HOH A 50 604 604 HOH HOH . I 4 HOH A 51 605 605 HOH HOH . I 4 HOH A 52 606 606 HOH HOH . I 4 HOH A 53 607 607 HOH HOH . I 4 HOH A 54 608 608 HOH HOH . I 4 HOH A 55 609 609 HOH HOH . I 4 HOH A 56 610 610 HOH HOH . I 4 HOH A 57 611 611 HOH HOH . I 4 HOH A 58 612 612 HOH HOH . I 4 HOH A 59 613 613 HOH HOH . I 4 HOH A 60 614 614 HOH HOH . I 4 HOH A 61 615 615 HOH HOH . I 4 HOH A 62 616 616 HOH HOH . I 4 HOH A 63 617 617 HOH HOH . I 4 HOH A 64 618 618 HOH HOH . I 4 HOH A 65 619 619 HOH HOH . I 4 HOH A 66 620 620 HOH HOH . I 4 HOH A 67 621 621 HOH HOH . I 4 HOH A 68 622 622 HOH HOH . I 4 HOH A 69 623 623 HOH HOH . I 4 HOH A 70 624 624 HOH HOH . I 4 HOH A 71 625 625 HOH HOH . I 4 HOH A 72 626 626 HOH HOH . I 4 HOH A 73 627 627 HOH HOH . I 4 HOH A 74 628 628 HOH HOH . I 4 HOH A 75 629 629 HOH HOH . I 4 HOH A 76 630 630 HOH HOH . I 4 HOH A 77 631 631 HOH HOH . I 4 HOH A 78 632 632 HOH HOH . I 4 HOH A 79 633 633 HOH HOH . I 4 HOH A 80 634 634 HOH HOH . I 4 HOH A 81 635 635 HOH HOH . I 4 HOH A 82 636 636 HOH HOH . I 4 HOH A 83 637 637 HOH HOH . I 4 HOH A 84 638 638 HOH HOH . I 4 HOH A 85 639 639 HOH HOH . I 4 HOH A 86 640 640 HOH HOH . I 4 HOH A 87 641 641 HOH HOH . I 4 HOH A 88 642 642 HOH HOH . I 4 HOH A 89 643 643 HOH HOH . I 4 HOH A 90 644 644 HOH HOH . I 4 HOH A 91 645 645 HOH HOH . I 4 HOH A 92 646 646 HOH HOH . I 4 HOH A 93 647 647 HOH HOH . I 4 HOH A 94 648 648 HOH HOH . I 4 HOH A 95 649 649 HOH HOH . I 4 HOH A 96 650 650 HOH HOH . I 4 HOH A 97 651 651 HOH HOH . I 4 HOH A 98 652 652 HOH HOH . I 4 HOH A 99 653 653 HOH HOH . I 4 HOH A 100 654 654 HOH HOH . I 4 HOH A 101 655 655 HOH HOH . I 4 HOH A 102 656 656 HOH HOH . I 4 HOH A 103 657 657 HOH HOH . I 4 HOH A 104 658 658 HOH HOH . I 4 HOH A 105 659 659 HOH HOH . I 4 HOH A 106 660 660 HOH HOH . I 4 HOH A 107 661 661 HOH HOH . I 4 HOH A 108 662 662 HOH HOH . I 4 HOH A 109 663 663 HOH HOH . I 4 HOH A 110 664 664 HOH HOH . I 4 HOH A 111 665 665 HOH HOH . I 4 HOH A 112 666 666 HOH HOH . I 4 HOH A 113 667 667 HOH HOH . I 4 HOH A 114 668 668 HOH HOH . I 4 HOH A 115 669 669 HOH HOH . I 4 HOH A 116 670 670 HOH HOH . I 4 HOH A 117 671 671 HOH HOH . I 4 HOH A 118 672 672 HOH HOH . I 4 HOH A 119 673 673 HOH HOH . I 4 HOH A 120 674 674 HOH HOH . I 4 HOH A 121 675 675 HOH HOH . I 4 HOH A 122 676 676 HOH HOH . I 4 HOH A 123 677 677 HOH HOH . I 4 HOH A 124 678 678 HOH HOH . I 4 HOH A 125 679 679 HOH HOH . I 4 HOH A 126 680 680 HOH HOH . I 4 HOH A 127 681 681 HOH HOH . I 4 HOH A 128 682 682 HOH HOH . I 4 HOH A 129 683 683 HOH HOH . I 4 HOH A 130 684 684 HOH HOH . I 4 HOH A 131 685 685 HOH HOH . I 4 HOH A 132 686 686 HOH HOH . I 4 HOH A 133 687 687 HOH HOH . I 4 HOH A 134 688 688 HOH HOH . I 4 HOH A 135 689 689 HOH HOH . I 4 HOH A 136 690 690 HOH HOH . I 4 HOH A 137 691 691 HOH HOH . I 4 HOH A 138 692 692 HOH HOH . I 4 HOH A 139 693 693 HOH HOH . I 4 HOH A 140 694 694 HOH HOH . I 4 HOH A 141 695 554 HOH HOH . I 4 HOH A 142 696 1 HOH HOH . J 4 HOH B 1 555 555 HOH HOH . J 4 HOH B 2 556 556 HOH HOH . J 4 HOH B 3 557 557 HOH HOH . J 4 HOH B 4 558 558 HOH HOH . J 4 HOH B 5 559 559 HOH HOH . J 4 HOH B 6 560 560 HOH HOH . J 4 HOH B 7 561 561 HOH HOH . J 4 HOH B 8 562 562 HOH HOH . J 4 HOH B 9 563 563 HOH HOH . J 4 HOH B 10 564 564 HOH HOH . J 4 HOH B 11 565 565 HOH HOH . J 4 HOH B 12 566 566 HOH HOH . J 4 HOH B 13 567 567 HOH HOH . J 4 HOH B 14 568 568 HOH HOH . J 4 HOH B 15 569 569 HOH HOH . J 4 HOH B 16 570 570 HOH HOH . J 4 HOH B 17 571 571 HOH HOH . J 4 HOH B 18 572 572 HOH HOH . J 4 HOH B 19 573 573 HOH HOH . J 4 HOH B 20 574 574 HOH HOH . J 4 HOH B 21 575 575 HOH HOH . J 4 HOH B 22 576 576 HOH HOH . J 4 HOH B 23 577 577 HOH HOH . J 4 HOH B 24 578 578 HOH HOH . J 4 HOH B 25 579 579 HOH HOH . J 4 HOH B 26 580 580 HOH HOH . J 4 HOH B 27 581 581 HOH HOH . J 4 HOH B 28 582 582 HOH HOH . J 4 HOH B 29 583 583 HOH HOH . J 4 HOH B 30 584 584 HOH HOH . J 4 HOH B 31 585 585 HOH HOH . J 4 HOH B 32 586 586 HOH HOH . J 4 HOH B 33 587 587 HOH HOH . J 4 HOH B 34 588 588 HOH HOH . J 4 HOH B 35 589 589 HOH HOH . J 4 HOH B 36 590 590 HOH HOH . J 4 HOH B 37 591 591 HOH HOH . J 4 HOH B 38 592 592 HOH HOH . J 4 HOH B 39 593 593 HOH HOH . J 4 HOH B 40 594 594 HOH HOH . J 4 HOH B 41 595 595 HOH HOH . J 4 HOH B 42 596 596 HOH HOH . J 4 HOH B 43 597 597 HOH HOH . J 4 HOH B 44 598 598 HOH HOH . J 4 HOH B 45 599 599 HOH HOH . J 4 HOH B 46 600 600 HOH HOH . J 4 HOH B 47 601 601 HOH HOH . J 4 HOH B 48 602 602 HOH HOH . J 4 HOH B 49 603 603 HOH HOH . J 4 HOH B 50 604 604 HOH HOH . J 4 HOH B 51 605 605 HOH HOH . J 4 HOH B 52 606 606 HOH HOH . J 4 HOH B 53 607 607 HOH HOH . J 4 HOH B 54 608 608 HOH HOH . J 4 HOH B 55 609 609 HOH HOH . J 4 HOH B 56 610 610 HOH HOH . J 4 HOH B 57 611 611 HOH HOH . J 4 HOH B 58 612 612 HOH HOH . J 4 HOH B 59 613 613 HOH HOH . J 4 HOH B 60 614 614 HOH HOH . J 4 HOH B 61 615 615 HOH HOH . J 4 HOH B 62 616 616 HOH HOH . J 4 HOH B 63 617 617 HOH HOH . J 4 HOH B 64 618 618 HOH HOH . J 4 HOH B 65 619 619 HOH HOH . J 4 HOH B 66 620 620 HOH HOH . J 4 HOH B 67 621 621 HOH HOH . J 4 HOH B 68 622 622 HOH HOH . J 4 HOH B 69 623 623 HOH HOH . J 4 HOH B 70 624 624 HOH HOH . J 4 HOH B 71 625 625 HOH HOH . J 4 HOH B 72 626 626 HOH HOH . J 4 HOH B 73 627 627 HOH HOH . J 4 HOH B 74 628 628 HOH HOH . J 4 HOH B 75 629 629 HOH HOH . J 4 HOH B 76 630 630 HOH HOH . J 4 HOH B 77 631 631 HOH HOH . J 4 HOH B 78 632 632 HOH HOH . J 4 HOH B 79 633 633 HOH HOH . J 4 HOH B 80 634 634 HOH HOH . J 4 HOH B 81 635 635 HOH HOH . J 4 HOH B 82 636 636 HOH HOH . J 4 HOH B 83 637 637 HOH HOH . J 4 HOH B 84 638 638 HOH HOH . J 4 HOH B 85 639 639 HOH HOH . J 4 HOH B 86 640 640 HOH HOH . J 4 HOH B 87 641 641 HOH HOH . J 4 HOH B 88 642 642 HOH HOH . J 4 HOH B 89 643 643 HOH HOH . J 4 HOH B 90 644 644 HOH HOH . J 4 HOH B 91 645 645 HOH HOH . J 4 HOH B 92 646 646 HOH HOH . J 4 HOH B 93 647 647 HOH HOH . J 4 HOH B 94 648 648 HOH HOH . J 4 HOH B 95 649 554 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CO _atom_site.label_atom_id CO _atom_site.label_comp_id CO _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -6.279 _atom_site.Cartn_y -18.634 _atom_site.Cartn_z 22.745 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 23.38 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CO _atom_site.auth_comp_id CO _atom_site.auth_seq_id 553 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #