data_3NVO # _model_server_result.job_id UqrHWKNNI0TeNZzP2NyCDQ _model_server_result.datetime_utc '2024-11-15 13:42:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nvo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":271}' # _entry.id 3NVO # _exptl.entry_id 3NVO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.58 _cell.angle_gamma 90 _cell.entry_id 3NVO _cell.length_a 45.039 _cell.length_b 93.845 _cell.length_c 68.231 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NVO _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 1 1 A,C,D,E,F,G,H,I,O 2 1 B,J,K,L,M,N,P 2 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,y+1/2,-z -1 0 0 0 1 0 0 0 -1 45.039 46.9225 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A N GLY 1 A GLY 1 1_555 I ZN ZN . A ZN 271 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? metalc ? metalc2 A N HIS 2 A HIS 2 1_555 I ZN ZN . A ZN 271 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc3 A ND1 HIS 2 A HIS 2 1_555 I ZN ZN . A ZN 271 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc4 A SG CYS 94 A CYS 94 1_555 H ZN ZN . A ZN 270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.586 ? metalc ? metalc5 A OE1 GLU 115 A GLU 115 1_555 I ZN ZN . A ZN 271 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc6 A OD2 ASP 131 A ASP 131 1_555 F ZN ZN . A ZN 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc7 A NE2 HIS 159 A HIS 159 1_555 F ZN ZN . A ZN 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc8 A ND1 HIS 168 A HIS 168 1_555 G ZN ZN . A ZN 269 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? metalc ? metalc9 A SG CYS 246 A CYS 246 1_555 G ZN ZN . A ZN 269 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc10 A NH2 ARG 249 A ARG 249 1_555 G ZN ZN . A ZN 269 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.664 ? metalc ? metalc11 B N GLY 1 B GLY 1 1_555 N ZN ZN . B ZN 269 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? metalc ? metalc12 B N HIS 2 B HIS 2 1_555 N ZN ZN . B ZN 269 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc13 B ND1 HIS 2 B HIS 2 1_555 N ZN ZN . B ZN 269 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? metalc ? metalc14 B OD2 ASP 38 B ASP 38 1_555 M ZN ZN . B ZN 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc15 B OD1 ASP 38 B ASP 38 1_555 M ZN ZN . B ZN 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc16 B ND1 HIS 41 B HIS 41 1_555 M ZN ZN . B ZN 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc17 B OE1 GLU 115 B GLU 115 1_555 N ZN ZN . B ZN 269 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc18 B OD2 ASP 131 B ASP 131 1_555 L ZN ZN . B ZN 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc19 B OD1 ASP 131 B ASP 131 1_555 L ZN ZN . B ZN 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? metalc ? metalc20 B NE2 HIS 159 B HIS 159 1_555 L ZN ZN . B ZN 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc21 B ND1 HIS 168 B HIS 168 1_555 K ZN ZN . B ZN 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc22 B SG CYS 246 B CYS 246 1_555 K ZN ZN . B ZN 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3NVO _atom_sites.fract_transf_matrix[1][1] 0.022203 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000612 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010656 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014662 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 265 265 SO4 SO4 . D 2 SO4 A 1 266 266 SO4 SO4 . E 2 SO4 A 1 267 267 SO4 SO4 . F 3 ZN A 1 268 268 ZN ZN . G 3 ZN A 1 269 269 ZN ZN . H 3 ZN A 1 270 270 ZN ZN . I 3 ZN A 1 271 271 ZN ZN . J 2 SO4 B 1 265 265 SO4 SO4 . K 3 ZN B 1 266 266 ZN ZN . L 3 ZN B 1 267 267 ZN ZN . M 3 ZN B 1 268 268 ZN ZN . N 3 ZN B 1 269 269 ZN ZN . O 4 HOH A 1 272 272 HOH HOH . O 4 HOH A 2 273 273 HOH HOH . O 4 HOH A 3 274 274 HOH HOH . O 4 HOH A 4 275 275 HOH HOH . O 4 HOH A 5 276 276 HOH HOH . O 4 HOH A 6 277 277 HOH HOH . O 4 HOH A 7 278 278 HOH HOH . O 4 HOH A 8 279 279 HOH HOH . O 4 HOH A 9 280 280 HOH HOH . O 4 HOH A 10 281 281 HOH HOH . O 4 HOH A 11 282 282 HOH HOH . O 4 HOH A 12 283 283 HOH HOH . O 4 HOH A 13 284 284 HOH HOH . O 4 HOH A 14 285 285 HOH HOH . O 4 HOH A 15 286 286 HOH HOH . O 4 HOH A 16 287 287 HOH HOH . O 4 HOH A 17 288 288 HOH HOH . O 4 HOH A 18 289 289 HOH HOH . O 4 HOH A 19 290 290 HOH HOH . O 4 HOH A 20 291 291 HOH HOH . O 4 HOH A 21 292 292 HOH HOH . O 4 HOH A 22 293 293 HOH HOH . O 4 HOH A 23 294 294 HOH HOH . O 4 HOH A 24 295 295 HOH HOH . O 4 HOH A 25 296 296 HOH HOH . O 4 HOH A 26 297 297 HOH HOH . O 4 HOH A 27 298 298 HOH HOH . O 4 HOH A 28 299 299 HOH HOH . O 4 HOH A 29 300 300 HOH HOH . O 4 HOH A 30 301 301 HOH HOH . O 4 HOH A 31 302 302 HOH HOH . O 4 HOH A 32 303 303 HOH HOH . O 4 HOH A 33 304 304 HOH HOH . O 4 HOH A 34 305 305 HOH HOH . O 4 HOH A 35 306 306 HOH HOH . O 4 HOH A 36 307 307 HOH HOH . O 4 HOH A 37 308 308 HOH HOH . O 4 HOH A 38 309 309 HOH HOH . O 4 HOH A 39 310 310 HOH HOH . O 4 HOH A 40 311 311 HOH HOH . O 4 HOH A 41 312 312 HOH HOH . O 4 HOH A 42 313 313 HOH HOH . O 4 HOH A 43 314 314 HOH HOH . O 4 HOH A 44 315 315 HOH HOH . O 4 HOH A 45 316 316 HOH HOH . O 4 HOH A 46 317 317 HOH HOH . O 4 HOH A 47 318 318 HOH HOH . O 4 HOH A 48 319 319 HOH HOH . O 4 HOH A 49 320 320 HOH HOH . O 4 HOH A 50 321 321 HOH HOH . O 4 HOH A 51 322 322 HOH HOH . O 4 HOH A 52 323 323 HOH HOH . O 4 HOH A 53 324 324 HOH HOH . O 4 HOH A 54 325 325 HOH HOH . O 4 HOH A 55 326 326 HOH HOH . O 4 HOH A 56 327 327 HOH HOH . O 4 HOH A 57 328 328 HOH HOH . O 4 HOH A 58 329 329 HOH HOH . O 4 HOH A 59 330 330 HOH HOH . O 4 HOH A 60 331 331 HOH HOH . O 4 HOH A 61 332 332 HOH HOH . O 4 HOH A 62 333 333 HOH HOH . O 4 HOH A 63 334 334 HOH HOH . O 4 HOH A 64 335 335 HOH HOH . O 4 HOH A 65 336 336 HOH HOH . P 4 HOH B 1 270 270 HOH HOH . P 4 HOH B 2 271 271 HOH HOH . P 4 HOH B 3 272 272 HOH HOH . P 4 HOH B 4 273 273 HOH HOH . P 4 HOH B 5 274 274 HOH HOH . P 4 HOH B 6 275 275 HOH HOH . P 4 HOH B 7 276 276 HOH HOH . P 4 HOH B 8 277 277 HOH HOH . P 4 HOH B 9 278 278 HOH HOH . P 4 HOH B 10 279 279 HOH HOH . P 4 HOH B 11 280 280 HOH HOH . P 4 HOH B 12 281 281 HOH HOH . P 4 HOH B 13 282 282 HOH HOH . P 4 HOH B 14 283 283 HOH HOH . P 4 HOH B 15 284 284 HOH HOH . P 4 HOH B 16 285 285 HOH HOH . P 4 HOH B 17 286 286 HOH HOH . P 4 HOH B 18 287 287 HOH HOH . P 4 HOH B 19 288 288 HOH HOH . P 4 HOH B 20 289 289 HOH HOH . P 4 HOH B 21 290 290 HOH HOH . P 4 HOH B 22 291 291 HOH HOH . P 4 HOH B 23 292 292 HOH HOH . P 4 HOH B 24 293 293 HOH HOH . P 4 HOH B 25 294 294 HOH HOH . P 4 HOH B 26 295 295 HOH HOH . P 4 HOH B 27 296 296 HOH HOH . P 4 HOH B 28 297 297 HOH HOH . P 4 HOH B 29 298 298 HOH HOH . P 4 HOH B 30 299 299 HOH HOH . P 4 HOH B 31 300 300 HOH HOH . P 4 HOH B 32 301 301 HOH HOH . P 4 HOH B 33 302 302 HOH HOH . P 4 HOH B 34 303 303 HOH HOH . P 4 HOH B 35 304 304 HOH HOH . P 4 HOH B 36 305 305 HOH HOH . P 4 HOH B 37 306 306 HOH HOH . P 4 HOH B 38 307 307 HOH HOH . P 4 HOH B 39 308 308 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 3 _atom_site.Cartn_x 16.427 _atom_site.Cartn_y 73.357 _atom_site.Cartn_z 36.89 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 63.95 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 271 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 1 #