data_3NVU # _model_server_result.job_id 5cGFKSWIOkq_fA6iPj-Ymg _model_server_result.datetime_utc '2024-11-24 21:57:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nvu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":493}' # _entry.id 3NVU # _exptl.entry_id 3NVU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 31.999 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OXYGEN MOLECULE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.25 _cell.angle_gamma 90 _cell.entry_id 3NVU _cell.length_a 127.158 _cell.length_b 79.828 _cell.length_c 43.322 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NVU _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 102 A HIS 102 1_555 C FE HEM . A HEM 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc2 C FE HEM . A HEM 200 1_555 D O1 OXY . A OXY 493 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc3 C FE HEM . A HEM 200 1_555 D O2 OXY . A OXY 493 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.757 ? metalc ? metalc4 B NE2 HIS 102 B HIS 102 1_555 F FE HEM . B HEM 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc5 F FE HEM . B HEM 200 1_555 G O1 OXY . B OXY 494 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? # _chem_comp.formula O2 _chem_comp.formula_weight 31.999 _chem_comp.id OXY _chem_comp.mon_nstd_flag . _chem_comp.name 'OXYGEN MOLECULE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _chem_comp_bond.atom_id_1 O1 _chem_comp_bond.atom_id_2 O2 _chem_comp_bond.comp_id OXY _chem_comp_bond.value_order doub _chem_comp_bond.pdbx_ordinal 306 _chem_comp_bond.pdbx_stereo_config n _chem_comp_bond.pdbx_aromatic_flag n # _atom_sites.entry_id 3NVU _atom_sites.fract_transf_matrix[1][1] 0.007864 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001707 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012527 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023621 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 200 200 HEM HEM . D 3 OXY A 1 493 493 OXY OXY . E 4 CL A 1 189 1 CL CL . F 2 HEM B 1 200 200 HEM HEM . G 3 OXY B 1 494 494 OXY O2 . H 5 HOH A 1 190 2 HOH HOH . H 5 HOH A 2 191 6 HOH HOH . H 5 HOH A 3 192 7 HOH HOH . H 5 HOH A 4 193 11 HOH HOH . H 5 HOH A 5 194 12 HOH HOH . H 5 HOH A 6 195 13 HOH HOH . H 5 HOH A 7 196 14 HOH HOH . H 5 HOH A 8 197 15 HOH HOH . H 5 HOH A 9 198 18 HOH HOH . H 5 HOH A 10 199 21 HOH HOH . H 5 HOH A 11 201 22 HOH HOH . H 5 HOH A 12 202 23 HOH HOH . H 5 HOH A 13 203 26 HOH HOH . H 5 HOH A 14 204 27 HOH HOH . H 5 HOH A 15 205 28 HOH HOH . H 5 HOH A 16 206 30 HOH HOH . H 5 HOH A 17 207 31 HOH HOH . H 5 HOH A 18 208 32 HOH HOH . H 5 HOH A 19 209 34 HOH HOH . H 5 HOH A 20 210 35 HOH HOH . H 5 HOH A 21 211 36 HOH HOH . H 5 HOH A 22 212 37 HOH HOH . H 5 HOH A 23 213 39 HOH HOH . H 5 HOH A 24 214 44 HOH HOH . H 5 HOH A 25 215 53 HOH HOH . H 5 HOH A 26 216 54 HOH HOH . H 5 HOH A 27 217 58 HOH HOH . H 5 HOH A 28 218 63 HOH HOH . H 5 HOH A 29 219 67 HOH HOH . H 5 HOH A 30 220 68 HOH HOH . H 5 HOH A 31 221 71 HOH HOH . H 5 HOH A 32 222 74 HOH HOH . H 5 HOH A 33 223 75 HOH HOH . H 5 HOH A 34 224 78 HOH HOH . H 5 HOH A 35 225 79 HOH HOH . H 5 HOH A 36 226 80 HOH HOH . H 5 HOH A 37 227 81 HOH HOH . H 5 HOH A 38 228 82 HOH HOH . H 5 HOH A 39 229 87 HOH HOH . H 5 HOH A 40 230 89 HOH HOH . H 5 HOH A 41 231 90 HOH HOH . H 5 HOH A 42 232 92 HOH HOH . H 5 HOH A 43 233 93 HOH HOH . H 5 HOH A 44 234 97 HOH HOH . H 5 HOH A 45 235 100 HOH HOH . H 5 HOH A 46 236 101 HOH HOH . H 5 HOH A 47 237 102 HOH HOH . H 5 HOH A 48 238 105 HOH HOH . H 5 HOH A 49 239 106 HOH HOH . H 5 HOH A 50 240 107 HOH HOH . H 5 HOH A 51 241 108 HOH HOH . H 5 HOH A 52 242 109 HOH HOH . H 5 HOH A 53 243 110 HOH HOH . H 5 HOH A 54 244 111 HOH HOH . H 5 HOH A 55 245 112 HOH HOH . H 5 HOH A 56 246 113 HOH HOH . H 5 HOH A 57 247 114 HOH HOH . H 5 HOH A 58 248 115 HOH HOH . H 5 HOH A 59 249 126 HOH HOH . H 5 HOH A 60 250 131 HOH HOH . H 5 HOH A 61 251 134 HOH HOH . H 5 HOH A 62 252 135 HOH HOH . H 5 HOH A 63 253 139 HOH HOH . H 5 HOH A 64 254 140 HOH HOH . H 5 HOH A 65 255 141 HOH HOH . I 5 HOH B 1 189 1 HOH HOH . I 5 HOH B 2 190 3 HOH HOH . I 5 HOH B 3 191 4 HOH HOH . I 5 HOH B 4 192 5 HOH HOH . I 5 HOH B 5 193 8 HOH HOH . I 5 HOH B 6 194 9 HOH HOH . I 5 HOH B 7 195 10 HOH HOH . I 5 HOH B 8 196 16 HOH HOH . I 5 HOH B 9 197 17 HOH HOH . I 5 HOH B 10 198 19 HOH HOH . I 5 HOH B 11 199 20 HOH HOH . I 5 HOH B 12 201 24 HOH HOH . I 5 HOH B 13 202 25 HOH HOH . I 5 HOH B 14 203 29 HOH HOH . I 5 HOH B 15 204 33 HOH HOH . I 5 HOH B 16 205 38 HOH HOH . I 5 HOH B 17 206 40 HOH HOH . I 5 HOH B 18 207 41 HOH HOH . I 5 HOH B 19 208 42 HOH HOH . I 5 HOH B 20 209 43 HOH HOH . I 5 HOH B 21 210 45 HOH HOH . I 5 HOH B 22 211 46 HOH HOH . I 5 HOH B 23 212 47 HOH HOH . I 5 HOH B 24 213 48 HOH HOH . I 5 HOH B 25 214 49 HOH HOH . I 5 HOH B 26 215 50 HOH HOH . I 5 HOH B 27 216 51 HOH HOH . I 5 HOH B 28 217 52 HOH HOH . I 5 HOH B 29 218 55 HOH HOH . I 5 HOH B 30 219 56 HOH HOH . I 5 HOH B 31 220 57 HOH HOH . I 5 HOH B 32 221 59 HOH HOH . I 5 HOH B 33 222 60 HOH HOH . I 5 HOH B 34 223 61 HOH HOH . I 5 HOH B 35 224 62 HOH HOH . I 5 HOH B 36 225 64 HOH HOH . I 5 HOH B 37 226 65 HOH HOH . I 5 HOH B 38 227 66 HOH HOH . I 5 HOH B 39 228 69 HOH HOH . I 5 HOH B 40 229 70 HOH HOH . I 5 HOH B 41 230 72 HOH HOH . I 5 HOH B 42 231 73 HOH HOH . I 5 HOH B 43 232 76 HOH HOH . I 5 HOH B 44 233 77 HOH HOH . I 5 HOH B 45 234 83 HOH HOH . I 5 HOH B 46 235 84 HOH HOH . I 5 HOH B 47 236 85 HOH HOH . I 5 HOH B 48 237 86 HOH HOH . I 5 HOH B 49 238 88 HOH HOH . I 5 HOH B 50 239 91 HOH HOH . I 5 HOH B 51 240 94 HOH HOH . I 5 HOH B 52 241 95 HOH HOH . I 5 HOH B 53 242 96 HOH HOH . I 5 HOH B 54 243 98 HOH HOH . I 5 HOH B 55 244 99 HOH HOH . I 5 HOH B 56 245 103 HOH HOH . I 5 HOH B 57 246 104 HOH HOH . I 5 HOH B 58 247 116 HOH HOH . I 5 HOH B 59 248 117 HOH HOH . I 5 HOH B 60 249 118 HOH HOH . I 5 HOH B 61 250 119 HOH HOH . I 5 HOH B 62 251 120 HOH HOH . I 5 HOH B 63 252 121 HOH HOH . I 5 HOH B 64 253 122 HOH HOH . I 5 HOH B 65 254 123 HOH HOH . I 5 HOH B 66 255 124 HOH HOH . I 5 HOH B 67 256 125 HOH HOH . I 5 HOH B 68 257 127 HOH HOH . I 5 HOH B 69 258 128 HOH HOH . I 5 HOH B 70 259 129 HOH HOH . I 5 HOH B 71 260 130 HOH HOH . I 5 HOH B 72 261 132 HOH HOH . I 5 HOH B 73 262 133 HOH HOH . I 5 HOH B 74 263 136 HOH HOH . I 5 HOH B 75 264 137 HOH HOH . I 5 HOH B 76 265 138 HOH HOH . I 5 HOH B 77 266 142 HOH HOH . I 5 HOH B 78 267 143 HOH HOH . I 5 HOH B 79 268 144 HOH HOH . I 5 HOH B 80 269 145 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 OXY . . . D 3 49.861 -8.248 -25.837 1 18.15 ? O1 OXY 493 A 1 HETATM 2 O O2 OXY . . . D 3 49.618 -8.253 -24.469 1 31.98 ? O2 OXY 493 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 2 #