data_3NW2
#
_model_server_result.job_id            Sy9eyr5fStxa_LccK_t7PQ 
_model_server_result.datetime_utc      '2025-04-04 20:05:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3nw2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":901}' 
#
_entry.id    3NW2 
#
_exptl.entry_id    3NW2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3NW2 
_cell.length_a            212.6 
_cell.length_b            212.6 
_cell.length_c            111.5 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3NW2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,J 1 1,2 
B,G,H,I,K 2 1,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 11_655 -x+y+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 212.6 0 55.75 
3 'crystal symmetry operation' 9_766 -x+2,-x+y+1,-z+5/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 318.9 184.117001 185.833333 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 33 B CYS 109 1_555 B SG CYS 33 B CYS 109 9_766 ? ? ? ? ? ? ? ? ? ? ? ? 2.76 ? 
metalc ? metalc1 A SG CYS 118 A CYS 194 1_555 C FE HEM . A HEM 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.622 ? 
metalc ? metalc2 B SG CYS 118 B CYS 194 1_555 G FE HEM . B HEM 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 162 n n 
CHA C4D HEM doub 163 n n 
CHA HHA HEM sing 164 n n 
CHB C4A HEM sing 165 n n 
CHB C1B HEM doub 166 n n 
CHB HHB HEM sing 167 n n 
CHC C4B HEM sing 168 n n 
CHC C1C HEM doub 169 n n 
CHC HHC HEM sing 170 n n 
CHD C4C HEM doub 171 n n 
CHD C1D HEM sing 172 n n 
CHD HHD HEM sing 173 n n 
C1A C2A HEM doub 174 n y 
C1A NA HEM sing 175 n y 
C2A C3A HEM sing 176 n y 
C2A CAA HEM sing 177 n n 
C3A C4A HEM doub 178 n y 
C3A CMA HEM sing 179 n n 
C4A NA HEM sing 180 n y 
CMA HMA HEM sing 181 n n 
CMA HMAA HEM sing 182 n n 
CMA HMAB HEM sing 183 n n 
CAA CBA HEM sing 184 n n 
CAA HAA HEM sing 185 n n 
CAA HAAA HEM sing 186 n n 
CBA CGA HEM sing 187 n n 
CBA HBA HEM sing 188 n n 
CBA HBAA HEM sing 189 n n 
CGA O1A HEM doub 190 n n 
CGA O2A HEM sing 191 n n 
C1B C2B HEM sing 192 n n 
C1B NB HEM sing 193 n n 
C2B C3B HEM doub 194 n n 
C2B CMB HEM sing 195 n n 
C3B C4B HEM sing 196 n n 
C3B CAB HEM sing 197 n n 
C4B NB HEM doub 198 n n 
CMB HMB HEM sing 199 n n 
CMB HMBA HEM sing 200 n n 
CMB HMBB HEM sing 201 n n 
CAB CBB HEM doub 202 n n 
CAB HAB HEM sing 203 n n 
CBB HBB HEM sing 204 n n 
CBB HBBA HEM sing 205 n n 
C1C C2C HEM sing 206 n y 
C1C NC HEM sing 207 n y 
C2C C3C HEM doub 208 n y 
C2C CMC HEM sing 209 n n 
C3C C4C HEM sing 210 n y 
C3C CAC HEM sing 211 n n 
C4C NC HEM sing 212 n y 
CMC HMC HEM sing 213 n n 
CMC HMCA HEM sing 214 n n 
CMC HMCB HEM sing 215 n n 
CAC CBC HEM doub 216 n n 
CAC HAC HEM sing 217 n n 
CBC HBC HEM sing 218 n n 
CBC HBCA HEM sing 219 n n 
C1D C2D HEM sing 220 n n 
C1D ND HEM doub 221 n n 
C2D C3D HEM doub 222 n n 
C2D CMD HEM sing 223 n n 
C3D C4D HEM sing 224 n n 
C3D CAD HEM sing 225 n n 
C4D ND HEM sing 226 n n 
CMD HMD HEM sing 227 n n 
CMD HMDA HEM sing 228 n n 
CMD HMDB HEM sing 229 n n 
CAD CBD HEM sing 230 n n 
CAD HAD HEM sing 231 n n 
CAD HADA HEM sing 232 n n 
CBD CGD HEM sing 233 n n 
CBD HBD HEM sing 234 n n 
CBD HBDA HEM sing 235 n n 
CGD O1D HEM doub 236 n n 
CGD O2D HEM sing 237 n n 
O2A H2A HEM sing 238 n n 
O2D H2D HEM sing 239 n n 
FE NA HEM sing 240 n n 
FE NB HEM sing 241 n n 
FE NC HEM sing 242 n n 
FE ND HEM sing 243 n n 
#
_atom_sites.entry_id                     3NW2 
_atom_sites.fract_transf_matrix[1][1]    0.004704 
_atom_sites.fract_transf_matrix[1][2]    0.002716 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005431 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008969 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 901 901 HEM HEM . 
D 3 H4B A 1 902 902 H4B BH4 . 
E 4 SO4 A 1 907 907 SO4 SO4 . 
F 5 MPW A 1 1 1 MPW INH . 
G 2 HEM B 1 901 901 HEM HEM . 
H 3 H4B B 1 902 902 H4B BH4 . 
I 5 MPW B 1 1 1 MPW INH . 
J 6 HOH A 1 2 2 HOH HOH . 
J 6 HOH A 2 3 3 HOH HOH . 
J 6 HOH A 3 5 5 HOH HOH . 
J 6 HOH A 4 6 6 HOH HOH . 
J 6 HOH A 5 10 10 HOH HOH . 
J 6 HOH A 6 17 17 HOH HOH . 
J 6 HOH A 7 18 18 HOH HOH . 
J 6 HOH A 8 20 20 HOH HOH . 
J 6 HOH A 9 21 21 HOH HOH . 
J 6 HOH A 10 23 23 HOH HOH . 
J 6 HOH A 11 24 24 HOH HOH . 
J 6 HOH A 12 26 26 HOH HOH . 
J 6 HOH A 13 28 28 HOH HOH . 
J 6 HOH A 14 29 29 HOH HOH . 
J 6 HOH A 15 32 32 HOH HOH . 
J 6 HOH A 16 34 34 HOH HOH . 
J 6 HOH A 17 39 39 HOH HOH . 
J 6 HOH A 18 41 41 HOH HOH . 
J 6 HOH A 19 43 43 HOH HOH . 
J 6 HOH A 20 44 44 HOH HOH . 
J 6 HOH A 21 46 46 HOH HOH . 
J 6 HOH A 22 47 47 HOH HOH . 
J 6 HOH A 23 52 52 HOH HOH . 
J 6 HOH A 24 54 54 HOH HOH . 
J 6 HOH A 25 55 55 HOH HOH . 
J 6 HOH A 26 56 56 HOH HOH . 
J 6 HOH A 27 60 60 HOH HOH . 
J 6 HOH A 28 62 62 HOH HOH . 
J 6 HOH A 29 64 64 HOH HOH . 
J 6 HOH A 30 65 65 HOH HOH . 
J 6 HOH A 31 66 66 HOH HOH . 
J 6 HOH A 32 67 67 HOH HOH . 
J 6 HOH A 33 68 68 HOH HOH . 
J 6 HOH A 34 69 69 HOH HOH . 
J 6 HOH A 35 74 74 HOH HOH . 
J 6 HOH A 36 500 77 HOH HOH . 
J 6 HOH A 37 501 78 HOH HOH . 
J 6 HOH A 38 502 82 HOH HOH . 
J 6 HOH A 39 503 83 HOH HOH . 
J 6 HOH A 40 504 84 HOH HOH . 
K 6 HOH B 1 4 4 HOH HOH . 
K 6 HOH B 2 7 7 HOH HOH . 
K 6 HOH B 3 8 8 HOH HOH . 
K 6 HOH B 4 9 9 HOH HOH . 
K 6 HOH B 5 11 11 HOH HOH . 
K 6 HOH B 6 12 12 HOH HOH . 
K 6 HOH B 7 13 13 HOH HOH . 
K 6 HOH B 8 14 14 HOH HOH . 
K 6 HOH B 9 15 15 HOH HOH . 
K 6 HOH B 10 16 16 HOH HOH . 
K 6 HOH B 11 19 19 HOH HOH . 
K 6 HOH B 12 22 22 HOH HOH . 
K 6 HOH B 13 25 25 HOH HOH . 
K 6 HOH B 14 27 27 HOH HOH . 
K 6 HOH B 15 30 30 HOH HOH . 
K 6 HOH B 16 31 31 HOH HOH . 
K 6 HOH B 17 33 33 HOH HOH . 
K 6 HOH B 18 35 35 HOH HOH . 
K 6 HOH B 19 36 36 HOH HOH . 
K 6 HOH B 20 37 37 HOH HOH . 
K 6 HOH B 21 38 38 HOH HOH . 
K 6 HOH B 22 40 40 HOH HOH . 
K 6 HOH B 23 42 42 HOH HOH . 
K 6 HOH B 24 45 45 HOH HOH . 
K 6 HOH B 25 48 48 HOH HOH . 
K 6 HOH B 26 49 49 HOH HOH . 
K 6 HOH B 27 50 50 HOH HOH . 
K 6 HOH B 28 51 51 HOH HOH . 
K 6 HOH B 29 53 53 HOH HOH . 
K 6 HOH B 30 57 57 HOH HOH . 
K 6 HOH B 31 58 58 HOH HOH . 
K 6 HOH B 32 59 59 HOH HOH . 
K 6 HOH B 33 61 61 HOH HOH . 
K 6 HOH B 34 63 63 HOH HOH . 
K 6 HOH B 35 70 70 HOH HOH . 
K 6 HOH B 36 71 71 HOH HOH . 
K 6 HOH B 37 72 72 HOH HOH . 
K 6 HOH B 38 73 73 HOH HOH . 
K 6 HOH B 39 75 75 HOH HOH . 
K 6 HOH B 40 76 76 HOH HOH . 
K 6 HOH B 41 500 1 HOH HOH . 
K 6 HOH B 42 501 79 HOH HOH . 
K 6 HOH B 43 502 80 HOH HOH . 
K 6 HOH B 44 503 81 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . C 2 120.846 110.257 29.299 1 44.6 ? CHA HEM 901 A 1 
HETATM 2 C CHB HEM . . . C 2 122.17 114.176 26.832 1 49.67 ? CHB HEM 901 A 1 
HETATM 3 C CHC HEM . . . C 2 126.473 112.118 25.967 1 49.92 ? CHC HEM 901 A 1 
HETATM 4 C CHD HEM . . . C 2 125.11 108.185 28.327 1 53.87 ? CHD HEM 901 A 1 
HETATM 5 C C1A HEM . . . C 2 120.823 111.525 28.741 1 57.35 ? C1A HEM 901 A 1 
HETATM 6 C C2A HEM . . . C 2 119.73 112.466 28.859 1 50.11 ? C2A HEM 901 A 1 
HETATM 7 C C3A HEM . . . C 2 120.092 113.581 28.139 1 50.29 ? C3A HEM 901 A 1 
HETATM 8 C C4A HEM . . . C 2 121.431 113.303 27.603 1 53.91 ? C4A HEM 901 A 1 
HETATM 9 C CMA HEM . . . C 2 119.347 114.848 27.918 1 40.11 ? CMA HEM 901 A 1 
HETATM 10 C CAA HEM . . . C 2 118.444 112.238 29.663 1 57.11 ? CAA HEM 901 A 1 
HETATM 11 C CBA HEM . . . C 2 118.407 113.085 31.019 1 45.26 ? CBA HEM 901 A 1 
HETATM 12 C CGA HEM . . . C 2 118.687 112.442 32.272 1 73.08 ? CGA HEM 901 A 1 
HETATM 13 O O1A HEM . . . C 2 119.648 111.569 32.272 1 90.01 ? O1A HEM 901 A 1 
HETATM 14 O O2A HEM . . . C 2 118.066 112.697 33.34 1 64.09 ? O2A HEM 901 A 1 
HETATM 15 C C1B HEM . . . C 2 123.461 113.939 26.368 1 57.64 ? C1B HEM 901 A 1 
HETATM 16 C C2B HEM . . . C 2 124.215 114.895 25.578 1 59.7 ? C2B HEM 901 A 1 
HETATM 17 C C3B HEM . . . C 2 125.432 114.326 25.335 1 65.56 ? C3B HEM 901 A 1 
HETATM 18 C C4B HEM . . . C 2 125.408 113.013 25.98 1 64.53 ? C4B HEM 901 A 1 
HETATM 19 C CMB HEM . . . C 2 123.685 116.245 25.172 1 50.65 ? CMB HEM 901 A 1 
HETATM 20 C CAB HEM . . . C 2 126.615 114.894 24.58 1 77.07 ? CAB HEM 901 A 1 
HETATM 21 C CBB HEM . . . C 2 126.532 114.599 23.074 1 96.58 ? CBB HEM 901 A 1 
HETATM 22 C C1C HEM . . . C 2 126.502 110.886 26.558 1 35.83 ? C1C HEM 901 A 1 
HETATM 23 C C2C HEM . . . C 2 127.66 109.986 26.561 1 30.77 ? C2C HEM 901 A 1 
HETATM 24 C C3C HEM . . . C 2 127.244 108.873 27.226 1 42 ? C3C HEM 901 A 1 
HETATM 25 C C4C HEM . . . C 2 125.879 109.097 27.626 1 55.09 ? C4C HEM 901 A 1 
HETATM 26 C CMC HEM . . . C 2 128.987 110.348 25.935 1 1 ? CMC HEM 901 A 1 
HETATM 27 C CAC HEM . . . C 2 128.003 107.565 27.571 1 41.54 ? CAC HEM 901 A 1 
HETATM 28 C CBC HEM . . . C 2 129.536 107.546 27.291 1 60.98 ? CBC HEM 901 A 1 
HETATM 29 C C1D HEM . . . C 2 123.807 108.395 28.785 1 49.38 ? C1D HEM 901 A 1 
HETATM 30 C C2D HEM . . . C 2 123.05 107.408 29.561 1 40.12 ? C2D HEM 901 A 1 
HETATM 31 C C3D HEM . . . C 2 121.889 108.004 29.84 1 42.72 ? C3D HEM 901 A 1 
HETATM 32 C C4D HEM . . . C 2 121.899 109.339 29.224 1 38.84 ? C4D HEM 901 A 1 
HETATM 33 C CMD HEM . . . C 2 123.567 106.056 29.954 1 32 ? CMD HEM 901 A 1 
HETATM 34 C CAD HEM . . . C 2 120.747 107.514 30.654 1 46.21 ? CAD HEM 901 A 1 
HETATM 35 C CBD HEM . . . C 2 121.094 107.904 32.184 1 39.4 ? CBD HEM 901 A 1 
HETATM 36 C CGD HEM . . . C 2 120.142 107.493 33.106 1 66.03 ? CGD HEM 901 A 1 
HETATM 37 O O1D HEM . . . C 2 119.816 108.267 34.052 1 75.84 ? O1D HEM 901 A 1 
HETATM 38 O O2D HEM . . . C 2 119.609 106.366 33.018 1 82.46 ? O2D HEM 901 A 1 
HETATM 39 N NA HEM . . . C 2 121.858 112.04 27.981 1 47.62 ? NA HEM 901 A 1 
HETATM 40 N NB HEM . . . C 2 124.178 112.778 26.574 1 53.88 ? NB HEM 901 A 1 
HETATM 41 N NC HEM . . . C 2 125.409 110.324 27.226 1 51.21 ? NC HEM 901 A 1 
HETATM 42 N ND HEM . . . C 2 123.055 109.547 28.557 1 40.52 ? ND HEM 901 A 1 
HETATM 43 FE FE HEM . . . C 2 123.609 111.161 27.576 1 61.5 ? FE HEM 901 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           320 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           43 
#