data_3NWF # _model_server_result.job_id 1P7teyVfm2Y2UsTKnfI49g _model_server_result.datetime_utc '2025-01-10 15:11:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nwf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1674}' # _entry.id 3NWF # _exptl.entry_id 3NWF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3NWF _cell.length_a 117.802 _cell.length_b 117.802 _cell.length_c 318.324 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NWF _symmetry.cell_setting ? _symmetry.Int_Tables_number 143 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 PISA trimeric 3 author_and_software_defined_assembly 3 PISA trimeric 3 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,H,I,P 1 1,2,3 B,J,K,Q 2 1,4,5 C,L,M,N,R 3 1,2,3 D,O,S 4 1,4,5 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 58.901 -102.019525 0 5 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 117.802 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 I N N ? 2 J N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 89 A CYS 116 1_555 A SG CYS 546 A CYS 573 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 106 A CYS 133 1_555 A SG CYS 502 A CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf3 A SG CYS 180 A CYS 207 1_555 A SG CYS 244 A CYS 271 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf4 A SG CYS 337 A CYS 364 1_555 A SG CYS 385 A CYS 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf5 A SG CYS 569 A CYS 596 1_555 A SG CYS 606 A CYS 633 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 B SG CYS 89 B CYS 116 1_555 B SG CYS 546 B CYS 573 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf7 B SG CYS 106 B CYS 133 1_555 B SG CYS 502 B CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf8 B SG CYS 180 B CYS 207 1_555 B SG CYS 244 B CYS 271 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf9 B SG CYS 337 B CYS 364 1_555 B SG CYS 385 B CYS 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf10 B SG CYS 569 B CYS 596 1_555 B SG CYS 606 B CYS 633 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf11 C SG CYS 89 C CYS 116 1_555 C SG CYS 546 C CYS 573 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf12 C SG CYS 106 C CYS 133 1_555 C SG CYS 502 C CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf13 C SG CYS 180 C CYS 207 1_555 C SG CYS 244 C CYS 271 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf14 C SG CYS 337 C CYS 364 1_555 C SG CYS 385 C CYS 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf15 C SG CYS 569 C CYS 596 1_555 C SG CYS 606 C CYS 633 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf16 D SG CYS 89 D CYS 116 1_555 D SG CYS 546 D CYS 573 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf17 D SG CYS 106 D CYS 133 1_555 D SG CYS 502 D CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf18 D SG CYS 180 D CYS 207 1_555 D SG CYS 244 D CYS 271 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf19 D SG CYS 337 D CYS 364 1_555 D SG CYS 385 D CYS 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf20 D SG CYS 569 D CYS 596 1_555 D SG CYS 606 D CYS 633 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 114 A ASN 141 1_555 I C1 NAG . A NAG 1141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale2 A ND2 ASN 371 A ASN 398 1_555 E C1 NAG . A NAG 1398 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale3 A ND2 ASN 647 A ASN 674 1_555 F C1 NAG . A NAG 1674 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale4 B ND2 ASN 403 B ASN 430 1_555 J C1 NAG . B NAG 1430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale5 C ND2 ASN 114 C ASN 141 1_555 L C1 NAG . C NAG 1141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale6 C ND2 ASN 371 C ASN 398 1_555 M C1 NAG . C NAG 1398 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale7 C ND2 ASN 647 C ASN 674 1_555 N C1 NAG . C NAG 1674 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale8 D ND2 ASN 114 D ASN 141 1_555 O C1 NAG . D NAG 1141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? metalc ? metalc1 H NA NA . A NA 751 1_555 B O PRO 209 B PRO 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.195 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 254 n n C1 O1 NAG sing 255 n n C1 O5 NAG sing 256 n n C1 H1 NAG sing 257 n n C2 C3 NAG sing 258 n n C2 N2 NAG sing 259 n n C2 H2 NAG sing 260 n n C3 C4 NAG sing 261 n n C3 O3 NAG sing 262 n n C3 H3 NAG sing 263 n n C4 C5 NAG sing 264 n n C4 O4 NAG sing 265 n n C4 H4 NAG sing 266 n n C5 C6 NAG sing 267 n n C5 O5 NAG sing 268 n n C5 H5 NAG sing 269 n n C6 O6 NAG sing 270 n n C6 H61 NAG sing 271 n n C6 H62 NAG sing 272 n n C7 C8 NAG sing 273 n n C7 N2 NAG sing 274 n n C7 O7 NAG doub 275 n n C8 H81 NAG sing 276 n n C8 H82 NAG sing 277 n n C8 H83 NAG sing 278 n n N2 HN2 NAG sing 279 n n O1 HO1 NAG sing 280 n n O3 HO3 NAG sing 281 n n O4 HO4 NAG sing 282 n n O6 HO6 NAG sing 283 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 3NWF _atom_sites.fract_transf_matrix[1][1] 0.008489 _atom_sites.fract_transf_matrix[1][2] 0.004901 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009802 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003141 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAG A 1 1398 1398 NAG NAG . F 2 NAG A 1 1674 1674 NAG NAG . G 3 MRY A 1 4000 4000 MRY MRY . H 4 NA A 1 751 78 NA NA . I 2 NAG A 1 1141 1141 NAG NAG . J 2 NAG B 1 1430 1430 NAG NAG . K 3 MRY B 1 4000 4000 MRY MRY . L 2 NAG C 1 1141 1141 NAG NAG . M 2 NAG C 1 1398 1398 NAG NAG . N 2 NAG C 1 1674 1674 NAG NAG . O 2 NAG D 1 1141 1141 NAG NAG . P 5 HOH A 1 1 1 HOH HOH . P 5 HOH A 2 6 6 HOH HOH . P 5 HOH A 3 11 11 HOH HOH . P 5 HOH A 4 12 12 HOH HOH . P 5 HOH A 5 13 13 HOH HOH . P 5 HOH A 6 14 14 HOH HOH . P 5 HOH A 7 15 15 HOH HOH . P 5 HOH A 8 16 16 HOH HOH . P 5 HOH A 9 17 17 HOH HOH . P 5 HOH A 10 18 18 HOH HOH . P 5 HOH A 11 19 19 HOH HOH . P 5 HOH A 12 20 20 HOH HOH . P 5 HOH A 13 731 38 HOH HOH . P 5 HOH A 14 732 39 HOH HOH . P 5 HOH A 15 733 44 HOH HOH . P 5 HOH A 16 734 47 HOH HOH . P 5 HOH A 17 735 48 HOH HOH . P 5 HOH A 18 736 49 HOH HOH . P 5 HOH A 19 737 51 HOH HOH . P 5 HOH A 20 738 53 HOH HOH . P 5 HOH A 21 739 54 HOH HOH . P 5 HOH A 22 740 55 HOH HOH . P 5 HOH A 23 741 62 HOH HOH . P 5 HOH A 24 742 64 HOH HOH . P 5 HOH A 25 743 65 HOH HOH . P 5 HOH A 26 744 66 HOH HOH . P 5 HOH A 27 745 67 HOH HOH . P 5 HOH A 28 746 68 HOH HOH . P 5 HOH A 29 747 69 HOH HOH . P 5 HOH A 30 748 70 HOH HOH . P 5 HOH A 31 749 76 HOH HOH . P 5 HOH A 32 750 77 HOH HOH . Q 5 HOH B 1 4 4 HOH HOH . Q 5 HOH B 2 5 5 HOH HOH . Q 5 HOH B 3 8 8 HOH HOH . Q 5 HOH B 4 9 9 HOH HOH . Q 5 HOH B 5 732 30 HOH HOH . Q 5 HOH B 6 733 31 HOH HOH . Q 5 HOH B 7 734 36 HOH HOH . Q 5 HOH B 8 735 37 HOH HOH . Q 5 HOH B 9 736 43 HOH HOH . Q 5 HOH B 10 737 45 HOH HOH . Q 5 HOH B 11 738 50 HOH HOH . Q 5 HOH B 12 739 52 HOH HOH . Q 5 HOH B 13 740 57 HOH HOH . Q 5 HOH B 14 741 58 HOH HOH . Q 5 HOH B 15 742 59 HOH HOH . Q 5 HOH B 16 743 60 HOH HOH . Q 5 HOH B 17 744 61 HOH HOH . R 5 HOH C 1 3 3 HOH HOH . R 5 HOH C 2 21 21 HOH HOH . R 5 HOH C 3 22 22 HOH HOH . R 5 HOH C 4 23 23 HOH HOH . R 5 HOH C 5 731 33 HOH HOH . R 5 HOH C 6 732 34 HOH HOH . R 5 HOH C 7 733 35 HOH HOH . R 5 HOH C 8 734 40 HOH HOH . R 5 HOH C 9 735 42 HOH HOH . R 5 HOH C 10 736 46 HOH HOH . R 5 HOH C 11 737 56 HOH HOH . R 5 HOH C 12 738 71 HOH HOH . S 5 HOH D 1 2 2 HOH HOH . S 5 HOH D 2 7 7 HOH HOH . S 5 HOH D 3 10 10 HOH HOH . S 5 HOH D 4 24 24 HOH HOH . S 5 HOH D 5 25 25 HOH HOH . S 5 HOH D 6 26 26 HOH HOH . S 5 HOH D 7 27 27 HOH HOH . S 5 HOH D 8 731 28 HOH HOH . S 5 HOH D 9 732 29 HOH HOH . S 5 HOH D 10 733 32 HOH HOH . S 5 HOH D 11 734 41 HOH HOH . S 5 HOH D 12 735 72 HOH HOH . S 5 HOH D 13 736 73 HOH HOH . S 5 HOH D 14 737 74 HOH HOH . S 5 HOH D 15 738 75 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . F 2 -10.281 11.234 230.217 1 73.46 ? C1 NAG 1674 A 1 HETATM 2 C C2 NAG . . . F 2 -11.271 12.33 230.611 1 73.46 ? C2 NAG 1674 A 1 HETATM 3 C C3 NAG . . . F 2 -12.139 12.737 229.429 1 73.46 ? C3 NAG 1674 A 1 HETATM 4 C C4 NAG . . . F 2 -11.25 13.075 228.241 1 73.46 ? C4 NAG 1674 A 1 HETATM 5 C C5 NAG . . . F 2 -10.249 11.96 227.958 1 73.46 ? C5 NAG 1674 A 1 HETATM 6 C C6 NAG . . . F 2 -9.312 12.385 226.834 1 73.46 ? C6 NAG 1674 A 1 HETATM 7 C C7 NAG . . . F 2 -12.178 12.633 232.822 1 73.46 ? C7 NAG 1674 A 1 HETATM 8 C C8 NAG . . . F 2 -13.241 12.258 233.812 1 73.46 ? C8 NAG 1674 A 1 HETATM 9 N N2 NAG . . . F 2 -12.106 11.902 231.716 1 73.46 ? N2 NAG 1674 A 1 HETATM 10 O O3 NAG . . . F 2 -12.904 13.87 229.786 1 73.46 ? O3 NAG 1674 A 1 HETATM 11 O O4 NAG . . . F 2 -12.046 13.287 227.097 1 73.46 ? O4 NAG 1674 A 1 HETATM 12 O O5 NAG . . . F 2 -9.494 11.643 229.113 1 73.46 ? O5 NAG 1674 A 1 HETATM 13 O O6 NAG . . . F 2 -8.523 11.281 226.445 1 73.46 ? O6 NAG 1674 A 1 HETATM 14 O O7 NAG . . . F 2 -11.422 13.579 233.041 1 73.46 ? O7 NAG 1674 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 231 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 14 #