data_3NWL # _model_server_result.job_id 2gaIUymXQpv2lm3VFx2grw _model_server_result.datetime_utc '2024-11-15 15:34:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nwl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":528}' # _entry.id 3NWL # _exptl.entry_id 3NWL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3NWL _cell.length_a 68.652 _cell.length_b 173.744 _cell.length_c 186.325 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NWL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 J N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OH TYR 358 A TYR 357 1_555 E FE HEM . A HEM 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc2 B OH TYR 358 B TYR 357 1_555 G FE HEM . B HEM 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc3 C OH TYR 358 C TYR 357 1_555 I FE HEM . C HEM 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc4 D OH TYR 358 D TYR 357 1_555 K FE HEM . D HEM 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 319 n n PA O2A NDP sing 320 n n PA O5B NDP sing 321 n n PA O3 NDP sing 322 n n O2A HOA2 NDP sing 323 n n O5B C5B NDP sing 324 n n C5B C4B NDP sing 325 n n C5B H51A NDP sing 326 n n C5B H52A NDP sing 327 n n C4B O4B NDP sing 328 n n C4B C3B NDP sing 329 n n C4B H4B NDP sing 330 n n O4B C1B NDP sing 331 n n C3B O3B NDP sing 332 n n C3B C2B NDP sing 333 n n C3B H3B NDP sing 334 n n O3B HO3A NDP sing 335 n n C2B O2B NDP sing 336 n n C2B C1B NDP sing 337 n n C2B H2B NDP sing 338 n n O2B P2B NDP sing 339 n n C1B N9A NDP sing 340 n n C1B H1B NDP sing 341 n n N9A C8A NDP sing 342 n y N9A C4A NDP sing 343 n y C8A N7A NDP doub 344 n y C8A H8A NDP sing 345 n n N7A C5A NDP sing 346 n y C5A C6A NDP sing 347 n y C5A C4A NDP doub 348 n y C6A N6A NDP sing 349 n n C6A N1A NDP doub 350 n y N6A H61A NDP sing 351 n n N6A H62A NDP sing 352 n n N1A C2A NDP sing 353 n y C2A N3A NDP doub 354 n y C2A H2A NDP sing 355 n n N3A C4A NDP sing 356 n y O3 PN NDP sing 357 n n PN O1N NDP doub 358 n n PN O2N NDP sing 359 n n PN O5D NDP sing 360 n n O2N H21N NDP sing 361 n n O5D C5D NDP sing 362 n n C5D C4D NDP sing 363 n n C5D H51N NDP sing 364 n n C5D H52N NDP sing 365 n n C4D O4D NDP sing 366 n n C4D C3D NDP sing 367 n n C4D H4D NDP sing 368 n n O4D C1D NDP sing 369 n n C3D O3D NDP sing 370 n n C3D C2D NDP sing 371 n n C3D H3D NDP sing 372 n n O3D HO3N NDP sing 373 n n C2D O2D NDP sing 374 n n C2D C1D NDP sing 375 n n C2D H2D NDP sing 376 n n O2D HO2N NDP sing 377 n n C1D N1N NDP sing 378 n n C1D H1D NDP sing 379 n n N1N C2N NDP sing 380 n n N1N C6N NDP sing 381 n n C2N C3N NDP doub 382 n n C2N H2N NDP sing 383 n n C3N C7N NDP sing 384 n n C3N C4N NDP sing 385 n n C7N O7N NDP doub 386 n n C7N N7N NDP sing 387 n n N7N H71N NDP sing 388 n n N7N H72N NDP sing 389 n n C4N C5N NDP sing 390 n n C4N H41N NDP sing 391 n n C4N H42N NDP sing 392 n n C5N C6N NDP doub 393 n n C5N H5N NDP sing 394 n n C6N H6N NDP sing 395 n n P2B O1X NDP doub 396 n n P2B O2X NDP sing 397 n n P2B O3X NDP sing 398 n n O2X HOP2 NDP sing 399 n n O3X HOP3 NDP sing 400 n n # _atom_sites.entry_id 3NWL _atom_sites.fract_transf_matrix[1][1] 0.014566 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005756 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005367 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HEM A 1 527 502 HEM HEM . F 3 NDP A 1 528 503 NDP NDP . G 2 HEM B 1 527 502 HEM HEM . H 3 NDP B 1 528 503 NDP NDP . I 2 HEM C 1 527 502 HEM HEM . J 3 NDP C 1 528 503 NDP NDP . K 2 HEM D 1 527 502 HEM HEM . L 3 NDP D 1 528 503 NDP NDP . M 4 HOH A 1 529 1 HOH HOH . M 4 HOH A 2 530 3 HOH HOH . M 4 HOH A 3 531 5 HOH HOH . M 4 HOH A 4 532 11 HOH HOH . M 4 HOH A 5 533 14 HOH HOH . M 4 HOH A 6 534 15 HOH HOH . M 4 HOH A 7 535 16 HOH HOH . M 4 HOH A 8 536 20 HOH HOH . M 4 HOH A 9 537 21 HOH HOH . M 4 HOH A 10 538 27 HOH HOH . M 4 HOH A 11 539 29 HOH HOH . M 4 HOH A 12 540 38 HOH HOH . M 4 HOH A 13 541 42 HOH HOH . M 4 HOH A 14 542 47 HOH HOH . M 4 HOH A 15 543 60 HOH HOH . M 4 HOH A 16 544 61 HOH HOH . M 4 HOH A 17 545 63 HOH HOH . M 4 HOH A 18 546 67 HOH HOH . M 4 HOH A 19 547 68 HOH HOH . M 4 HOH A 20 548 72 HOH HOH . M 4 HOH A 21 549 74 HOH HOH . M 4 HOH A 22 550 77 HOH HOH . M 4 HOH A 23 551 82 HOH HOH . M 4 HOH A 24 552 84 HOH HOH . M 4 HOH A 25 553 94 HOH HOH . M 4 HOH A 26 554 98 HOH HOH . M 4 HOH A 27 555 104 HOH HOH . M 4 HOH A 28 556 106 HOH HOH . M 4 HOH A 29 557 107 HOH HOH . M 4 HOH A 30 558 109 HOH HOH . M 4 HOH A 31 559 115 HOH HOH . M 4 HOH A 32 560 128 HOH HOH . M 4 HOH A 33 561 132 HOH HOH . M 4 HOH A 34 562 142 HOH HOH . M 4 HOH A 35 563 143 HOH HOH . M 4 HOH A 36 564 144 HOH HOH . M 4 HOH A 37 565 145 HOH HOH . N 4 HOH B 1 529 9 HOH HOH . N 4 HOH B 2 530 34 HOH HOH . N 4 HOH B 3 531 48 HOH HOH . N 4 HOH B 4 532 51 HOH HOH . N 4 HOH B 5 533 54 HOH HOH . N 4 HOH B 6 534 56 HOH HOH . N 4 HOH B 7 535 75 HOH HOH . N 4 HOH B 8 536 78 HOH HOH . N 4 HOH B 9 537 79 HOH HOH . N 4 HOH B 10 538 85 HOH HOH . N 4 HOH B 11 539 86 HOH HOH . N 4 HOH B 12 540 88 HOH HOH . N 4 HOH B 13 541 92 HOH HOH . N 4 HOH B 14 542 97 HOH HOH . N 4 HOH B 15 543 102 HOH HOH . N 4 HOH B 16 544 103 HOH HOH . N 4 HOH B 17 545 105 HOH HOH . N 4 HOH B 18 546 111 HOH HOH . N 4 HOH B 19 547 112 HOH HOH . N 4 HOH B 20 548 121 HOH HOH . N 4 HOH B 21 549 129 HOH HOH . O 4 HOH C 1 529 4 HOH HOH . O 4 HOH C 2 530 10 HOH HOH . O 4 HOH C 3 531 22 HOH HOH . O 4 HOH C 4 532 24 HOH HOH . O 4 HOH C 5 533 26 HOH HOH . O 4 HOH C 6 534 28 HOH HOH . O 4 HOH C 7 535 37 HOH HOH . O 4 HOH C 8 536 41 HOH HOH . O 4 HOH C 9 537 45 HOH HOH . O 4 HOH C 10 538 46 HOH HOH . O 4 HOH C 11 539 52 HOH HOH . O 4 HOH C 12 540 53 HOH HOH . O 4 HOH C 13 541 64 HOH HOH . O 4 HOH C 14 542 66 HOH HOH . O 4 HOH C 15 543 70 HOH HOH . O 4 HOH C 16 544 71 HOH HOH . O 4 HOH C 17 545 73 HOH HOH . O 4 HOH C 18 546 76 HOH HOH . O 4 HOH C 19 547 81 HOH HOH . O 4 HOH C 20 548 89 HOH HOH . O 4 HOH C 21 549 95 HOH HOH . O 4 HOH C 22 550 110 HOH HOH . O 4 HOH C 23 551 117 HOH HOH . O 4 HOH C 24 552 118 HOH HOH . O 4 HOH C 25 553 120 HOH HOH . O 4 HOH C 26 554 122 HOH HOH . O 4 HOH C 27 555 125 HOH HOH . O 4 HOH C 28 556 133 HOH HOH . O 4 HOH C 29 557 138 HOH HOH . O 4 HOH C 30 558 139 HOH HOH . O 4 HOH C 31 559 147 HOH HOH . P 4 HOH D 1 529 2 HOH HOH . P 4 HOH D 2 530 13 HOH HOH . P 4 HOH D 3 531 18 HOH HOH . P 4 HOH D 4 532 23 HOH HOH . P 4 HOH D 5 533 30 HOH HOH . P 4 HOH D 6 534 31 HOH HOH . P 4 HOH D 7 535 33 HOH HOH . P 4 HOH D 8 536 35 HOH HOH . P 4 HOH D 9 537 39 HOH HOH . P 4 HOH D 10 538 40 HOH HOH . P 4 HOH D 11 539 44 HOH HOH . P 4 HOH D 12 540 49 HOH HOH . P 4 HOH D 13 541 50 HOH HOH . P 4 HOH D 14 542 55 HOH HOH . P 4 HOH D 15 543 57 HOH HOH . P 4 HOH D 16 544 58 HOH HOH . P 4 HOH D 17 545 59 HOH HOH . P 4 HOH D 18 546 62 HOH HOH . P 4 HOH D 19 547 65 HOH HOH . P 4 HOH D 20 548 80 HOH HOH . P 4 HOH D 21 549 87 HOH HOH . P 4 HOH D 22 550 90 HOH HOH . P 4 HOH D 23 551 96 HOH HOH . P 4 HOH D 24 552 99 HOH HOH . P 4 HOH D 25 553 100 HOH HOH . P 4 HOH D 26 554 101 HOH HOH . P 4 HOH D 27 555 108 HOH HOH . P 4 HOH D 28 556 116 HOH HOH . P 4 HOH D 29 557 124 HOH HOH . P 4 HOH D 30 558 126 HOH HOH . P 4 HOH D 31 559 135 HOH HOH . P 4 HOH D 32 560 146 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . H 3 55.669 108.292 96.936 1 28.83 ? PA NDP 528 B 1 HETATM 2 O O1A NDP . . . H 3 55.102 108.055 95.548 1 28.04 ? O1A NDP 528 B 1 HETATM 3 O O2A NDP . . . H 3 56.759 109.319 97.234 1 26.45 ? O2A NDP 528 B 1 HETATM 4 O O5B NDP . . . H 3 56.301 106.873 97.353 1 33.13 ? O5B NDP 528 B 1 HETATM 5 C C5B NDP . . . H 3 55.942 105.645 96.713 1 37.18 ? C5B NDP 528 B 1 HETATM 6 C C4B NDP . . . H 3 56.558 104.534 97.558 1 40.58 ? C4B NDP 528 B 1 HETATM 7 O O4B NDP . . . H 3 55.798 103.326 97.465 1 40.91 ? O4B NDP 528 B 1 HETATM 8 C C3B NDP . . . H 3 57.973 104.214 97.114 1 42.62 ? C3B NDP 528 B 1 HETATM 9 O O3B NDP . . . H 3 58.841 104.28 98.24 1 45.21 ? O3B NDP 528 B 1 HETATM 10 C C2B NDP . . . H 3 57.949 102.765 96.694 1 45.69 ? C2B NDP 528 B 1 HETATM 11 O O2B NDP . . . H 3 59.163 102.115 97.113 1 48.99 ? O2B NDP 528 B 1 HETATM 12 C C1B NDP . . . H 3 56.678 102.205 97.328 1 43.41 ? C1B NDP 528 B 1 HETATM 13 N N9A NDP . . . H 3 55.982 101.187 96.499 1 43.04 ? N9A NDP 528 B 1 HETATM 14 C C8A NDP . . . H 3 55.777 101.242 95.164 1 42.89 ? C8A NDP 528 B 1 HETATM 15 N N7A NDP . . . H 3 55.071 100.147 94.778 1 42.91 ? N7A NDP 528 B 1 HETATM 16 C C5A NDP . . . H 3 54.823 99.416 95.893 1 43.29 ? C5A NDP 528 B 1 HETATM 17 C C6A NDP . . . H 3 54.154 98.215 96.117 1 43.07 ? C6A NDP 528 B 1 HETATM 18 N N6A NDP . . . H 3 53.592 97.571 95.06 1 41.43 ? N6A NDP 528 B 1 HETATM 19 N N1A NDP . . . H 3 54.088 97.711 97.393 1 43.04 ? N1A NDP 528 B 1 HETATM 20 C C2A NDP . . . H 3 54.647 98.368 98.435 1 40.91 ? C2A NDP 528 B 1 HETATM 21 N N3A NDP . . . H 3 55.292 99.534 98.234 1 40.98 ? N3A NDP 528 B 1 HETATM 22 C C4A NDP . . . H 3 55.399 100.073 96.98 1 42.58 ? C4A NDP 528 B 1 HETATM 23 O O3 NDP . . . H 3 54.371 108.59 97.855 1 25.99 ? O3 NDP 528 B 1 HETATM 24 P PN NDP . . . H 3 54.27 108.943 99.448 1 25.28 ? PN NDP 528 B 1 HETATM 25 O O1N NDP . . . H 3 53.242 110.067 99.606 1 23.25 ? O1N NDP 528 B 1 HETATM 26 O O2N NDP . . . H 3 55.601 108.976 100.199 1 22.84 ? O2N NDP 528 B 1 HETATM 27 O O5D NDP . . . H 3 53.518 107.609 99.868 1 23.75 ? O5D NDP 528 B 1 HETATM 28 C C5D NDP . . . H 3 52.149 107.481 99.484 1 23.76 ? C5D NDP 528 B 1 HETATM 29 C C4D NDP . . . H 3 51.72 106.042 99.706 1 23.75 ? C4D NDP 528 B 1 HETATM 30 O O4D NDP . . . H 3 52.734 105.15 99.23 1 25.97 ? O4D NDP 528 B 1 HETATM 31 C C3D NDP . . . H 3 51.596 105.727 101.184 1 22.72 ? C3D NDP 528 B 1 HETATM 32 O O3D NDP . . . H 3 50.297 106.078 101.644 1 20.5 ? O3D NDP 528 B 1 HETATM 33 C C2D NDP . . . H 3 51.896 104.245 101.245 1 24.09 ? C2D NDP 528 B 1 HETATM 34 O O2D NDP . . . H 3 50.705 103.497 100.973 1 24.93 ? O2D NDP 528 B 1 HETATM 35 C C1D NDP . . . H 3 52.859 104.008 100.097 1 25.6 ? C1D NDP 528 B 1 HETATM 36 N N1N NDP . . . H 3 54.262 103.877 100.538 1 28.69 ? N1N NDP 528 B 1 HETATM 37 C C2N NDP . . . H 3 54.883 104.89 101.184 1 29.7 ? C2N NDP 528 B 1 HETATM 38 C C3N NDP . . . H 3 56.221 104.781 101.581 1 30.54 ? C3N NDP 528 B 1 HETATM 39 C C7N NDP . . . H 3 56.868 105.903 102.345 1 31.3 ? C7N NDP 528 B 1 HETATM 40 O O7N NDP . . . H 3 57.631 105.614 103.253 1 31.32 ? O7N NDP 528 B 1 HETATM 41 N N7N NDP . . . H 3 56.546 107.175 102.071 1 32.91 ? N7N NDP 528 B 1 HETATM 42 C C4N NDP . . . H 3 56.926 103.609 101.308 1 29.73 ? C4N NDP 528 B 1 HETATM 43 C C5N NDP . . . H 3 56.275 102.573 100.634 1 29.15 ? C5N NDP 528 B 1 HETATM 44 C C6N NDP . . . H 3 54.936 102.735 100.265 1 29.19 ? C6N NDP 528 B 1 HETATM 45 P P2B NDP . . . H 3 60.461 102.18 96.124 1 54.15 ? P2B NDP 528 B 1 HETATM 46 O O1X NDP . . . H 3 59.981 102.439 94.694 1 50.38 ? O1X NDP 528 B 1 HETATM 47 O O2X NDP . . . H 3 61.105 100.822 96.254 1 54.97 ? O2X NDP 528 B 1 HETATM 48 O O3X NDP . . . H 3 61.271 103.293 96.769 1 53.58 ? O3X NDP 528 B 1 # _model_server_stats.io_time_ms 39 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 48 #