data_3NWY
#
_model_server_result.job_id            bA8TqaT0YFT5p-WlQ0dg2A 
_model_server_result.datetime_utc      '2024-11-22 06:00:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3nwy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":262}' 
#
_entry.id    3NWY 
#
_exptl.entry_id    3NWY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              523.18 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3NWY 
_cell.length_a            136.71 
_cell.length_b            175.48 
_cell.length_c            65.41 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3NWY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 H N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
#
_chem_comp.formula           'C10 H16 N5 O14 P3' 
_chem_comp.formula_weight    523.18 
_chem_comp.id                GTP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "GUANOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GTP doub 129 n n 
PG O2G GTP sing 130 n n 
PG O3G GTP sing 131 n n 
PG O3B GTP sing 132 n n 
O2G HOG2 GTP sing 133 n n 
O3G HOG3 GTP sing 134 n n 
O3B PB GTP sing 135 n n 
PB O1B GTP doub 136 n n 
PB O2B GTP sing 137 n n 
PB O3A GTP sing 138 n n 
O2B HOB2 GTP sing 139 n n 
O3A PA GTP sing 140 n n 
PA O1A GTP doub 141 n n 
PA O2A GTP sing 142 n n 
PA O5' GTP sing 143 n n 
O2A HOA2 GTP sing 144 n n 
O5' C5' GTP sing 145 n n 
C5' C4' GTP sing 146 n n 
C5' H5' GTP sing 147 n n 
C5' "H5''" GTP sing 148 n n 
C4' O4' GTP sing 149 n n 
C4' C3' GTP sing 150 n n 
C4' H4' GTP sing 151 n n 
O4' C1' GTP sing 152 n n 
C3' O3' GTP sing 153 n n 
C3' C2' GTP sing 154 n n 
C3' H3' GTP sing 155 n n 
O3' HO3' GTP sing 156 n n 
C2' O2' GTP sing 157 n n 
C2' C1' GTP sing 158 n n 
C2' H2' GTP sing 159 n n 
O2' HO2' GTP sing 160 n n 
C1' N9 GTP sing 161 n n 
C1' H1' GTP sing 162 n n 
N9 C8 GTP sing 163 n y 
N9 C4 GTP sing 164 n y 
C8 N7 GTP doub 165 n y 
C8 H8 GTP sing 166 n n 
N7 C5 GTP sing 167 n y 
C5 C6 GTP sing 168 n n 
C5 C4 GTP doub 169 n y 
C6 O6 GTP doub 170 n n 
C6 N1 GTP sing 171 n n 
N1 C2 GTP sing 172 n n 
N1 HN1 GTP sing 173 n n 
C2 N2 GTP sing 174 n n 
C2 N3 GTP doub 175 n n 
N2 HN21 GTP sing 176 n n 
N2 HN22 GTP sing 177 n n 
N3 C4 GTP sing 178 n n 
#
_atom_sites.entry_id                     3NWY 
_atom_sites.fract_transf_matrix[1][1]    0.007315 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005699 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015288 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 GTP A 1 262 262 GTP GTP . 
H 2 GTP B 1 262 262 GTP GTP . 
I 3 UDP B 1 263 263 UDP UDP . 
J 2 GTP C 1 262 262 GTP GTP . 
K 2 GTP D 1 262 262 GTP GTP . 
L 2 GTP E 1 262 262 GTP GTP . 
M 2 GTP F 1 262 262 GTP GTP . 
N 4 HOH A 1 263 21 HOH HOH . 
N 4 HOH A 2 264 36 HOH HOH . 
N 4 HOH A 3 265 42 HOH HOH . 
N 4 HOH A 4 266 66 HOH HOH . 
N 4 HOH A 5 267 73 HOH HOH . 
N 4 HOH A 6 268 75 HOH HOH . 
N 4 HOH A 7 269 86 HOH HOH . 
N 4 HOH A 8 270 124 HOH HOH . 
N 4 HOH A 9 271 217 HOH HOH . 
N 4 HOH A 10 302 302 HOH HOH . 
N 4 HOH A 11 357 357 HOH HOH . 
N 4 HOH A 12 395 395 HOH HOH . 
N 4 HOH A 13 397 397 HOH HOH . 
N 4 HOH A 14 409 409 HOH HOH . 
N 4 HOH A 15 410 410 HOH HOH . 
N 4 HOH A 16 411 411 HOH HOH . 
N 4 HOH A 17 412 412 HOH HOH . 
N 4 HOH A 18 505 505 HOH HOH . 
N 4 HOH A 19 506 506 HOH HOH . 
N 4 HOH A 20 509 509 HOH HOH . 
N 4 HOH A 21 510 510 HOH HOH . 
N 4 HOH A 22 513 513 HOH HOH . 
N 4 HOH A 23 514 514 HOH HOH . 
N 4 HOH A 24 515 515 HOH HOH . 
N 4 HOH A 25 521 521 HOH HOH . 
N 4 HOH A 26 522 522 HOH HOH . 
N 4 HOH A 27 523 523 HOH HOH . 
N 4 HOH A 28 524 524 HOH HOH . 
N 4 HOH A 29 538 538 HOH HOH . 
N 4 HOH A 30 539 539 HOH HOH . 
N 4 HOH A 31 540 540 HOH HOH . 
N 4 HOH A 32 541 541 HOH HOH . 
N 4 HOH A 33 542 542 HOH HOH . 
N 4 HOH A 34 543 543 HOH HOH . 
N 4 HOH A 35 544 544 HOH HOH . 
N 4 HOH A 36 545 545 HOH HOH . 
N 4 HOH A 37 546 546 HOH HOH . 
N 4 HOH A 38 548 548 HOH HOH . 
N 4 HOH A 39 569 569 HOH HOH . 
N 4 HOH A 40 570 570 HOH HOH . 
N 4 HOH A 41 571 571 HOH HOH . 
O 4 HOH B 1 264 16 HOH HOH . 
O 4 HOH B 2 265 67 HOH HOH . 
O 4 HOH B 3 266 69 HOH HOH . 
O 4 HOH B 4 267 121 HOH HOH . 
O 4 HOH B 5 268 125 HOH HOH . 
O 4 HOH B 6 269 194 HOH HOH . 
O 4 HOH B 7 390 390 HOH HOH . 
O 4 HOH B 8 398 398 HOH HOH . 
O 4 HOH B 9 399 399 HOH HOH . 
O 4 HOH B 10 400 400 HOH HOH . 
O 4 HOH B 11 402 402 HOH HOH . 
O 4 HOH B 12 403 403 HOH HOH . 
O 4 HOH B 13 413 413 HOH HOH . 
O 4 HOH B 14 415 415 HOH HOH . 
O 4 HOH B 15 416 416 HOH HOH . 
O 4 HOH B 16 417 417 HOH HOH . 
O 4 HOH B 17 418 418 HOH HOH . 
O 4 HOH B 18 419 419 HOH HOH . 
O 4 HOH B 19 421 421 HOH HOH . 
O 4 HOH B 20 422 422 HOH HOH . 
O 4 HOH B 21 423 423 HOH HOH . 
O 4 HOH B 22 424 424 HOH HOH . 
O 4 HOH B 23 507 507 HOH HOH . 
O 4 HOH B 24 511 511 HOH HOH . 
O 4 HOH B 25 525 525 HOH HOH . 
O 4 HOH B 26 526 526 HOH HOH . 
O 4 HOH B 27 527 527 HOH HOH . 
O 4 HOH B 28 528 528 HOH HOH . 
O 4 HOH B 29 547 547 HOH HOH . 
O 4 HOH B 30 550 550 HOH HOH . 
O 4 HOH B 31 551 551 HOH HOH . 
O 4 HOH B 32 562 562 HOH HOH . 
P 4 HOH C 1 263 23 HOH HOH . 
P 4 HOH C 2 264 48 HOH HOH . 
P 4 HOH C 3 265 74 HOH HOH . 
P 4 HOH C 4 266 201 HOH HOH . 
P 4 HOH C 5 267 244 HOH HOH . 
P 4 HOH C 6 372 372 HOH HOH . 
P 4 HOH C 7 383 383 HOH HOH . 
P 4 HOH C 8 389 389 HOH HOH . 
P 4 HOH C 9 394 394 HOH HOH . 
P 4 HOH C 10 404 404 HOH HOH . 
P 4 HOH C 11 405 405 HOH HOH . 
P 4 HOH C 12 406 406 HOH HOH . 
P 4 HOH C 13 407 407 HOH HOH . 
P 4 HOH C 14 432 432 HOH HOH . 
P 4 HOH C 15 512 512 HOH HOH . 
P 4 HOH C 16 520 520 HOH HOH . 
P 4 HOH C 17 529 529 HOH HOH . 
P 4 HOH C 18 530 530 HOH HOH . 
P 4 HOH C 19 531 531 HOH HOH . 
P 4 HOH C 20 532 532 HOH HOH . 
P 4 HOH C 21 552 552 HOH HOH . 
P 4 HOH C 22 553 553 HOH HOH . 
P 4 HOH C 23 554 554 HOH HOH . 
Q 4 HOH D 1 263 9 HOH HOH . 
Q 4 HOH D 2 264 31 HOH HOH . 
Q 4 HOH D 3 393 393 HOH HOH . 
Q 4 HOH D 4 429 429 HOH HOH . 
Q 4 HOH D 5 430 430 HOH HOH . 
Q 4 HOH D 6 431 431 HOH HOH . 
Q 4 HOH D 7 503 503 HOH HOH . 
Q 4 HOH D 8 516 516 HOH HOH . 
Q 4 HOH D 9 517 517 HOH HOH . 
Q 4 HOH D 10 518 518 HOH HOH . 
Q 4 HOH D 11 519 519 HOH HOH . 
Q 4 HOH D 12 555 555 HOH HOH . 
Q 4 HOH D 13 556 556 HOH HOH . 
Q 4 HOH D 14 557 557 HOH HOH . 
R 4 HOH E 1 263 20 HOH HOH . 
R 4 HOH E 2 391 391 HOH HOH . 
R 4 HOH E 3 392 392 HOH HOH . 
R 4 HOH E 4 408 408 HOH HOH . 
R 4 HOH E 5 427 427 HOH HOH . 
R 4 HOH E 6 533 533 HOH HOH . 
R 4 HOH E 7 534 534 HOH HOH . 
R 4 HOH E 8 535 535 HOH HOH . 
R 4 HOH E 9 536 536 HOH HOH . 
R 4 HOH E 10 537 537 HOH HOH . 
R 4 HOH E 11 558 558 HOH HOH . 
R 4 HOH E 12 559 559 HOH HOH . 
R 4 HOH E 13 560 560 HOH HOH . 
R 4 HOH E 14 561 561 HOH HOH . 
S 4 HOH F 1 263 10 HOH HOH . 
S 4 HOH F 2 264 25 HOH HOH . 
S 4 HOH F 3 401 401 HOH HOH . 
S 4 HOH F 4 414 414 HOH HOH . 
S 4 HOH F 5 420 420 HOH HOH . 
S 4 HOH F 6 425 425 HOH HOH . 
S 4 HOH F 7 426 426 HOH HOH . 
S 4 HOH F 8 501 501 HOH HOH . 
S 4 HOH F 9 502 502 HOH HOH . 
S 4 HOH F 10 504 504 HOH HOH . 
S 4 HOH F 11 508 508 HOH HOH . 
S 4 HOH F 12 549 549 HOH HOH . 
S 4 HOH F 13 563 563 HOH HOH . 
S 4 HOH F 14 564 564 HOH HOH . 
S 4 HOH F 15 565 565 HOH HOH . 
S 4 HOH F 16 566 566 HOH HOH . 
S 4 HOH F 17 567 567 HOH HOH . 
S 4 HOH F 18 568 568 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GTP . . . G 2 76.089 34.772 13.788 1 61.83 ? PG GTP 262 A 1 
HETATM 2 O O1G GTP . . . G 2 77.392 34.116 13.383 1 61.75 ? O1G GTP 262 A 1 
HETATM 3 O O2G GTP . . . G 2 76.117 36.236 13.409 1 62.16 ? O2G GTP 262 A 1 
HETATM 4 O O3G GTP . . . G 2 74.909 34.069 13.158 1 61.16 ? O3G GTP 262 A 1 
HETATM 5 O O3B GTP . . . G 2 75.894 34.622 15.367 1 60.22 ? O3B GTP 262 A 1 
HETATM 6 P PB GTP . . . G 2 76.617 33.397 16.103 1 60.18 ? PB GTP 262 A 1 
HETATM 7 O O1B GTP . . . G 2 75.682 32.745 17.09 1 58.83 ? O1B GTP 262 A 1 
HETATM 8 O O2B GTP . . . G 2 77.213 32.372 15.147 1 59.2 ? O2B GTP 262 A 1 
HETATM 9 O O3A GTP . . . G 2 77.753 34.198 16.887 1 56.82 ? O3A GTP 262 A 1 
HETATM 10 P PA GTP . . . G 2 78.799 33.461 17.852 1 53.62 ? PA GTP 262 A 1 
HETATM 11 O O1A GTP . . . G 2 78.266 33.526 19.263 1 53.52 ? O1A GTP 262 A 1 
HETATM 12 O O2A GTP . . . G 2 80.106 34.229 17.731 1 53.79 ? O2A GTP 262 A 1 
HETATM 13 O O5' GTP . . . G 2 78.869 31.915 17.386 1 48.76 ? O5' GTP 262 A 1 
HETATM 14 C C5' GTP . . . G 2 80.036 31.363 16.821 1 47.36 ? C5' GTP 262 A 1 
HETATM 15 C C4' GTP . . . G 2 80.485 30.128 17.594 1 46.3 ? C4' GTP 262 A 1 
HETATM 16 O O4' GTP . . . G 2 80.797 30.454 18.942 1 47.39 ? O4' GTP 262 A 1 
HETATM 17 C C3' GTP . . . G 2 79.405 29.057 17.636 1 44.77 ? C3' GTP 262 A 1 
HETATM 18 O O3' GTP . . . G 2 79.958 27.804 17.324 1 42.54 ? O3' GTP 262 A 1 
HETATM 19 C C2' GTP . . . G 2 78.892 29.13 19.066 1 44.94 ? C2' GTP 262 A 1 
HETATM 20 O O2' GTP . . . G 2 78.326 27.925 19.538 1 43.71 ? O2' GTP 262 A 1 
HETATM 21 C C1' GTP . . . G 2 80.149 29.556 19.818 1 45.35 ? C1' GTP 262 A 1 
HETATM 22 N N9 GTP . . . G 2 79.832 30.158 21.116 1 44.45 ? N9 GTP 262 A 1 
HETATM 23 C C8 GTP . . . G 2 79.163 31.323 21.37 1 44.88 ? C8 GTP 262 A 1 
HETATM 24 N N7 GTP . . . G 2 79.076 31.483 22.719 1 45.32 ? N7 GTP 262 A 1 
HETATM 25 C C5 GTP . . . G 2 79.681 30.436 23.324 1 45.04 ? C5 GTP 262 A 1 
HETATM 26 C C6 GTP . . . G 2 79.887 30.09 24.662 1 45.57 ? C6 GTP 262 A 1 
HETATM 27 O O6 GTP . . . G 2 79.491 30.818 25.579 1 45.47 ? O6 GTP 262 A 1 
HETATM 28 N N1 GTP . . . G 2 80.55 28.912 24.956 1 45.59 ? N1 GTP 262 A 1 
HETATM 29 C C2 GTP . . . G 2 81.011 28.104 23.933 1 45.47 ? C2 GTP 262 A 1 
HETATM 30 N N2 GTP . . . G 2 81.652 26.974 24.196 1 47.22 ? N2 GTP 262 A 1 
HETATM 31 N N3 GTP . . . G 2 80.806 28.456 22.62 1 45.13 ? N3 GTP 262 A 1 
HETATM 32 C C4 GTP . . . G 2 80.151 29.598 22.319 1 44.88 ? C4 GTP 262 A 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           32 
#