data_3NX5
#
_model_server_result.job_id            amFlgXVUwSQ8wq7QxLs7iA 
_model_server_result.datetime_utc      '2024-10-15 02:15:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3nx5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":7}' 
#
_entry.id    3NX5 
#
_exptl.entry_id    3NX5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              332.329 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            13-methyl[1,3]benzodioxolo[5,6-c][1,3]dioxolo[4,5-i]phenanthridin-13-ium 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3NX5 
_cell.length_a            29.992 
_cell.length_b            29.992 
_cell.length_c            119.069 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3NX5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,G,H 1 1 
C,D,E,F,I 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 F CA CA . D CA 1 1_555 D OP2 DG 6 D DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.884 ? 
hydrog WATSON-CRICK hydrog1 A N1 DG 2 A DG 2 1_555 B N3 DC 5 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 A N2 DG 2 A DG 2 1_555 B O2 DC 5 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 A O6 DG 2 A DG 2 1_555 B N4 DC 5 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog TYPE_4_PAIR hydrog4 A N2 DG 2 A DG 2 1_555 D N3 DG 6 D DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog TYPE_4_PAIR hydrog5 A N3 DG 2 A DG 2 1_555 D N2 DG 6 D DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 A N3 DT 3 A DT 3 1_555 B N1 DA 4 B DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 A O4 DT 3 A DT 3 1_555 B N6 DA 4 B DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 A N1 DA 4 A DA 4 1_555 B N3 DT 3 B DT 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 A N6 DA 4 A DA 4 1_555 B O4 DT 3 B DT 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 A N3 DC 5 A DC 5 1_555 B N1 DG 2 B DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog11 A N4 DC 5 A DC 5 1_555 B O6 DG 2 B DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog12 A O2 DC 5 A DC 5 1_555 B N2 DG 2 B DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'DG-DG MISPAIR' hydrog13 B N2 DG 6 B DG 12 1_555 C N3 DG 2 C DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog14 C N1 DG 2 C DG 2 1_555 D N3 DC 5 D DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog15 C N2 DG 2 C DG 2 1_555 D O2 DC 5 D DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog16 C O6 DG 2 C DG 2 1_555 D N4 DC 5 D DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog17 C N3 DT 3 C DT 3 1_555 D N1 DA 4 D DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog18 C O4 DT 3 C DT 3 1_555 D N6 DA 4 D DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog19 C N1 DA 4 C DA 4 1_555 D N3 DT 3 D DT 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog20 C N6 DA 4 C DA 4 1_555 D O4 DT 3 D DT 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog21 C N3 DC 5 C DC 5 1_555 D N1 DG 2 D DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog22 C N4 DC 5 C DC 5 1_555 D O6 DG 2 D DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog23 C O2 DC 5 C DC 5 1_555 D N2 DG 2 D DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'C20 H14 N O4 1' 
_chem_comp.formula_weight    332.329 
_chem_comp.id                SAU 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              13-methyl[1,3]benzodioxolo[5,6-c][1,3]dioxolo[4,5-i]phenanthridin-13-ium 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     Sanguinarine 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N C10 SAU doub 152 n y 
N C12 SAU sing 153 n y 
N C25 SAU sing 154 n n 
C1 O1 SAU sing 155 n n 
C1 O2 SAU sing 156 n n 
O1 C3 SAU sing 157 n n 
C2 O2 SAU sing 158 n n 
C2 C3 SAU doub 159 n y 
C2 C4 SAU sing 160 n y 
C3 C7 SAU sing 161 n y 
O3 C20 SAU sing 162 n n 
O3 C23 SAU sing 163 n n 
C4 C5 SAU doub 164 n y 
O4 C21 SAU sing 165 n n 
O4 C23 SAU sing 166 n n 
C5 C6 SAU sing 167 n y 
C5 C8 SAU sing 168 n y 
C6 C7 SAU doub 169 n y 
C6 C10 SAU sing 170 n y 
C8 C9 SAU doub 171 n y 
C9 C15 SAU sing 172 n y 
C10 C15 SAU sing 173 n y 
C12 C13 SAU doub 174 n y 
C13 C14 SAU sing 175 n y 
C13 C21 SAU sing 176 n y 
C14 C15 SAU doub 177 n y 
C14 C18 SAU sing 178 n y 
C18 C19 SAU doub 179 n y 
C19 C20 SAU sing 180 n y 
C20 C21 SAU doub 181 n y 
C1 H1 SAU sing 182 n n 
C1 H1A SAU sing 183 n n 
C4 H4 SAU sing 184 n n 
C7 H7 SAU sing 185 n n 
C8 H8 SAU sing 186 n n 
C9 H9 SAU sing 187 n n 
C12 H12 SAU sing 188 n n 
C18 H18 SAU sing 189 n n 
C19 H19 SAU sing 190 n n 
C23 H23 SAU sing 191 n n 
C23 H23A SAU sing 192 n n 
C25 H25 SAU sing 193 n n 
C25 H25A SAU sing 194 n n 
C25 H25B SAU sing 195 n n 
#
_atom_sites.entry_id                     3NX5 
_atom_sites.fract_transf_matrix[1][1]    0.033342 
_atom_sites.fract_transf_matrix[1][2]    0.01925 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.0385 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008398 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 SAU C 1 7 1 SAU SAU . 
F 3 CA D 1 1 1 CA CA . 
G 4 HOH A 1 7 2 HOH HOH . 
G 4 HOH A 2 8 5 HOH HOH . 
H 4 HOH B 1 1 1 HOH HOH . 
H 4 HOH B 2 3 3 HOH HOH . 
I 4 HOH D 1 4 4 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAU . . . E 2 -8.276 1.942 11.914 1 35.94 ? N SAU 7 C 1 
HETATM 2 C C1 SAU . . . E 2 -12.204 5.411 7.513 1 46.07 ? C1 SAU 7 C 1 
HETATM 3 O O1 SAU . . . E 2 -11.805 5.037 8.877 1 45.56 ? O1 SAU 7 C 1 
HETATM 4 C C2 SAU . . . E 2 -10.7 3.682 7.411 1 43.18 ? C2 SAU 7 C 1 
HETATM 5 O O2 SAU . . . E 2 -11.544 4.444 6.639 1 45.09 ? O2 SAU 7 C 1 
HETATM 6 C C3 SAU . . . E 2 -10.858 4.048 8.82 1 43.07 ? C3 SAU 7 C 1 
HETATM 7 O O3 SAU . . . E 2 -4.05 -2.126 13.465 1 37.73 ? O3 SAU 7 C 1 
HETATM 8 C C4 SAU . . . E 2 -9.79 2.715 7.026 1 40.79 ? C4 SAU 7 C 1 
HETATM 9 O O4 SAU . . . E 2 -5.468 -0.58 14.44 1 38.93 ? O4 SAU 7 C 1 
HETATM 10 C C5 SAU . . . E 2 -9.029 2.112 8.031 1 38.86 ? C5 SAU 7 C 1 
HETATM 11 C C6 SAU . . . E 2 -9.181 2.468 9.49 1 37.87 ? C6 SAU 7 C 1 
HETATM 12 C C7 SAU . . . E 2 -10.112 3.458 9.843 1 40.82 ? C7 SAU 7 C 1 
HETATM 13 C C8 SAU . . . E 2 -8.121 1.146 7.631 1 38.25 ? C8 SAU 7 C 1 
HETATM 14 C C9 SAU . . . E 2 -7.31 0.475 8.538 1 37.79 ? C9 SAU 7 C 1 
HETATM 15 C C10 SAU . . . E 2 -8.299 1.744 10.487 1 36.5 ? C10 SAU 7 C 1 
HETATM 16 C C12 SAU . . . E 2 -7.457 1.232 12.719 1 35.63 ? C12 SAU 7 C 1 
HETATM 17 C C13 SAU . . . E 2 -6.57 0.266 12.239 1 36.23 ? C13 SAU 7 C 1 
HETATM 18 C C14 SAU . . . E 2 -6.471 -0.029 10.785 1 35.72 ? C14 SAU 7 C 1 
HETATM 19 C C15 SAU . . . E 2 -7.367 0.728 9.899 1 36 ? C15 SAU 7 C 1 
HETATM 20 C C18 SAU . . . E 2 -5.586 -0.988 10.271 1 35.64 ? C18 SAU 7 C 1 
HETATM 21 C C19 SAU . . . E 2 -4.733 -1.737 11.09 1 36.83 ? C19 SAU 7 C 1 
HETATM 22 C C20 SAU . . . E 2 -4.76 -1.516 12.468 1 37.22 ? C20 SAU 7 C 1 
HETATM 23 C C21 SAU . . . E 2 -5.654 -0.537 13.087 1 37.2 ? C21 SAU 7 C 1 
HETATM 24 C C23 SAU . . . E 2 -4.662 -1.753 14.73 1 37.95 ? C23 SAU 7 C 1 
HETATM 25 C C25 SAU . . . E 2 -9.147 2.908 12.585 1 35.37 ? C25 SAU 7 C 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           606 
_model_server_stats.encode_time_ms          16 
_model_server_stats.element_count           25 
#