data_3NX7 # _model_server_result.job_id RARONj1K5ZBrJOWjypdi2A _model_server_result.datetime_utc '2024-10-22 03:40:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nx7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":267}' # _entry.id 3NX7 # _exptl.entry_id 3NX7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 114.5 _cell.angle_gamma 90 _cell.entry_id 3NX7 _cell.length_a 51.316 _cell.length_b 60.4 _cell.length_c 53.719 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NX7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 G O1 NHK . A NHK 0 1_555 B ZN ZN . A ZN 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc2 G O2 NHK . A NHK 0 1_555 B ZN ZN . A ZN 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc3 H O HOH . A HOH 11 1_555 D CA CA . A CA 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? metalc ? metalc4 H O HOH . A HOH 16 1_555 E CA CA . A CA 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc5 H O HOH . A HOH 72 1_555 E CA CA . A CA 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? metalc ? metalc6 A OD2 ASP 19 A ASP 124 1_555 E CA CA . A CA 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc7 A OD1 ASP 19 A ASP 124 1_555 E CA CA . A CA 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? metalc ? metalc8 A O ASP 53 A ASP 158 1_555 D CA CA . A CA 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc9 A NE2 HIS 63 A HIS 168 1_555 C ZN ZN . A ZN 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc10 A OD1 ASP 65 A ASP 170 1_555 C ZN ZN . A ZN 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.955 ? metalc ? metalc11 A OD2 ASP 70 A ASP 175 1_555 F CA CA . A CA 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc12 A O GLY 71 A GLY 176 1_555 F CA CA . A CA 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc13 A O GLY 73 A GLY 178 1_555 F CA CA . A CA 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc14 A O ILE 75 A ILE 180 1_555 F CA CA . A CA 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc15 A NE2 HIS 78 A HIS 183 1_555 C ZN ZN . A ZN 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc16 A O GLY 85 A GLY 190 1_555 D CA CA . A CA 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc17 A O GLY 87 A GLY 192 1_555 D CA CA . A CA 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc18 A OD2 ASP 89 A ASP 194 1_555 D CA CA . A CA 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? metalc ? metalc19 A ND1 HIS 91 A HIS 196 1_555 C ZN ZN . A ZN 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc20 A OD1 ASP 93 A ASP 198 1_555 F CA CA . A CA 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc21 A O GLU 94 A GLU 199 1_555 E CA CA . A CA 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc22 A OE2 GLU 94 A GLU 199 1_555 E CA CA . A CA 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc23 A O GLU 96 A GLU 201 1_555 E CA CA . A CA 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc24 A OE2 GLU 96 A GLU 201 1_555 F CA CA . A CA 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc25 A NE2 HIS 113 A HIS 218 1_555 B ZN ZN . A ZN 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc26 A NE2 HIS 117 A HIS 222 1_555 B ZN ZN . A ZN 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc27 A NE2 HIS 123 A HIS 228 1_555 B ZN ZN . A ZN 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3NX7 _atom_sites.fract_transf_matrix[1][1] 0.019487 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008881 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016556 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020457 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 264 264 ZN ZN . C 2 ZN A 1 265 265 ZN ZN . D 3 CA A 1 266 266 CA CA . E 3 CA A 1 267 267 CA CA . F 3 CA A 1 268 268 CA CA . G 4 NHK A 1 0 0 NHK NHK . H 5 HOH A 1 1 1 HOH HOH . H 5 HOH A 2 2 2 HOH HOH . H 5 HOH A 3 3 3 HOH HOH . H 5 HOH A 4 4 4 HOH HOH . H 5 HOH A 5 7 7 HOH HOH . H 5 HOH A 6 8 8 HOH HOH . H 5 HOH A 7 9 9 HOH HOH . H 5 HOH A 8 10 10 HOH HOH . H 5 HOH A 9 11 11 HOH HOH . H 5 HOH A 10 12 12 HOH HOH . H 5 HOH A 11 13 13 HOH HOH . H 5 HOH A 12 14 14 HOH HOH . H 5 HOH A 13 15 15 HOH HOH . H 5 HOH A 14 16 16 HOH HOH . H 5 HOH A 15 17 17 HOH HOH . H 5 HOH A 16 18 18 HOH HOH . H 5 HOH A 17 19 19 HOH HOH . H 5 HOH A 18 20 20 HOH HOH . H 5 HOH A 19 21 21 HOH HOH . H 5 HOH A 20 22 22 HOH HOH . H 5 HOH A 21 23 23 HOH HOH . H 5 HOH A 22 24 24 HOH HOH . H 5 HOH A 23 25 25 HOH HOH . H 5 HOH A 24 26 26 HOH HOH . H 5 HOH A 25 27 27 HOH HOH . H 5 HOH A 26 28 28 HOH HOH . H 5 HOH A 27 29 29 HOH HOH . H 5 HOH A 28 30 30 HOH HOH . H 5 HOH A 29 31 31 HOH HOH . H 5 HOH A 30 32 32 HOH HOH . H 5 HOH A 31 33 33 HOH HOH . H 5 HOH A 32 34 34 HOH HOH . H 5 HOH A 33 35 35 HOH HOH . H 5 HOH A 34 36 36 HOH HOH . H 5 HOH A 35 38 38 HOH HOH . H 5 HOH A 36 39 39 HOH HOH . H 5 HOH A 37 40 40 HOH HOH . H 5 HOH A 38 41 41 HOH HOH . H 5 HOH A 39 42 42 HOH HOH . H 5 HOH A 40 43 43 HOH HOH . H 5 HOH A 41 44 44 HOH HOH . H 5 HOH A 42 45 45 HOH HOH . H 5 HOH A 43 47 47 HOH HOH . H 5 HOH A 44 48 48 HOH HOH . H 5 HOH A 45 49 49 HOH HOH . H 5 HOH A 46 50 50 HOH HOH . H 5 HOH A 47 51 51 HOH HOH . H 5 HOH A 48 52 52 HOH HOH . H 5 HOH A 49 53 53 HOH HOH . H 5 HOH A 50 54 54 HOH HOH . H 5 HOH A 51 55 55 HOH HOH . H 5 HOH A 52 56 56 HOH HOH . H 5 HOH A 53 57 57 HOH HOH . H 5 HOH A 54 58 58 HOH HOH . H 5 HOH A 55 59 59 HOH HOH . H 5 HOH A 56 60 60 HOH HOH . H 5 HOH A 57 62 62 HOH HOH . H 5 HOH A 58 63 63 HOH HOH . H 5 HOH A 59 64 64 HOH HOH . H 5 HOH A 60 65 65 HOH HOH . H 5 HOH A 61 66 66 HOH HOH . H 5 HOH A 62 67 67 HOH HOH . H 5 HOH A 63 69 69 HOH HOH . H 5 HOH A 64 70 70 HOH HOH . H 5 HOH A 65 71 71 HOH HOH . H 5 HOH A 66 72 72 HOH HOH . H 5 HOH A 67 73 73 HOH HOH . H 5 HOH A 68 75 75 HOH HOH . H 5 HOH A 69 76 76 HOH HOH . H 5 HOH A 70 77 77 HOH HOH . H 5 HOH A 71 78 78 HOH HOH . H 5 HOH A 72 79 79 HOH HOH . H 5 HOH A 73 80 80 HOH HOH . H 5 HOH A 74 81 81 HOH HOH . H 5 HOH A 75 82 82 HOH HOH . H 5 HOH A 76 83 83 HOH HOH . H 5 HOH A 77 84 84 HOH HOH . H 5 HOH A 78 85 85 HOH HOH . H 5 HOH A 79 86 86 HOH HOH . H 5 HOH A 80 87 87 HOH HOH . H 5 HOH A 81 88 88 HOH HOH . H 5 HOH A 82 89 89 HOH HOH . H 5 HOH A 83 90 90 HOH HOH . H 5 HOH A 84 91 91 HOH HOH . H 5 HOH A 85 92 92 HOH HOH . H 5 HOH A 86 93 93 HOH HOH . H 5 HOH A 87 94 94 HOH HOH . H 5 HOH A 88 95 95 HOH HOH . H 5 HOH A 89 96 96 HOH HOH . H 5 HOH A 90 97 97 HOH HOH . H 5 HOH A 91 98 98 HOH HOH . H 5 HOH A 92 99 99 HOH HOH . H 5 HOH A 93 100 100 HOH HOH . H 5 HOH A 94 101 101 HOH HOH . H 5 HOH A 95 102 102 HOH HOH . H 5 HOH A 96 103 103 HOH HOH . H 5 HOH A 97 104 104 HOH HOH . H 5 HOH A 98 105 105 HOH HOH . H 5 HOH A 99 269 106 HOH HOH . H 5 HOH A 100 270 107 HOH HOH . H 5 HOH A 101 271 108 HOH HOH . H 5 HOH A 102 272 109 HOH HOH . H 5 HOH A 103 273 110 HOH HOH . H 5 HOH A 104 274 111 HOH HOH . H 5 HOH A 105 275 112 HOH HOH . H 5 HOH A 106 276 114 HOH HOH . H 5 HOH A 107 277 115 HOH HOH . H 5 HOH A 108 278 116 HOH HOH . H 5 HOH A 109 279 117 HOH HOH . H 5 HOH A 110 280 119 HOH HOH . H 5 HOH A 111 281 120 HOH HOH . H 5 HOH A 112 282 121 HOH HOH . H 5 HOH A 113 283 122 HOH HOH . H 5 HOH A 114 284 123 HOH HOH . H 5 HOH A 115 285 124 HOH HOH . H 5 HOH A 116 286 125 HOH HOH . H 5 HOH A 117 287 126 HOH HOH . H 5 HOH A 118 288 127 HOH HOH . H 5 HOH A 119 289 128 HOH HOH . H 5 HOH A 120 290 129 HOH HOH . H 5 HOH A 121 291 130 HOH HOH . H 5 HOH A 122 292 131 HOH HOH . H 5 HOH A 123 293 132 HOH HOH . H 5 HOH A 124 294 133 HOH HOH . H 5 HOH A 125 295 134 HOH HOH . H 5 HOH A 126 296 135 HOH HOH . H 5 HOH A 127 297 137 HOH HOH . H 5 HOH A 128 298 138 HOH HOH . H 5 HOH A 129 299 139 HOH HOH . H 5 HOH A 130 300 140 HOH HOH . H 5 HOH A 131 301 141 HOH HOH . H 5 HOH A 132 302 142 HOH HOH . H 5 HOH A 133 303 143 HOH HOH . H 5 HOH A 134 304 145 HOH HOH . H 5 HOH A 135 305 146 HOH HOH . H 5 HOH A 136 306 147 HOH HOH . H 5 HOH A 137 307 148 HOH HOH . H 5 HOH A 138 308 149 HOH HOH . H 5 HOH A 139 309 150 HOH HOH . H 5 HOH A 140 310 151 HOH HOH . H 5 HOH A 141 311 152 HOH HOH . H 5 HOH A 142 312 2 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x 8.73 _atom_site.Cartn_y -10.453 _atom_site.Cartn_z -15.123 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 7.98 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 267 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #