data_3NX8 # _model_server_result.job_id '_XLakI8GEDTzD3TKG-fLMA' _model_server_result.datetime_utc '2024-11-26 23:00:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nx8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":351}' # _entry.id 3NX8 # _exptl.entry_id 3NX8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.111 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHENOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3NX8 _cell.length_a 72.2 _cell.length_b 77.1 _cell.length_c 79.6 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NX8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TRP 197 A TRP 196 1_555 A N TPO 198 A TPO 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C TPO 198 A TPO 197 1_555 A N LEU 199 A LEU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.293 ? covale ? covale3 A C ILE 292 A ILE 291 1_555 A N LGY 293 A LGY 292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale4 A C LGY 293 A LGY 292 1_555 A N ASN 294 A ASN 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 A C VAL 338 A VAL 337 1_555 A N SEP 339 A SEP 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale6 A C SEP 339 A SEP 338 1_555 A N ILE 340 A ILE 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? # _chem_comp.formula 'C6 H6 O' _chem_comp.formula_weight 94.111 _chem_comp.id IPH _chem_comp.mon_nstd_flag . _chem_comp.name PHENOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3NX8 _atom_sites.fract_transf_matrix[1][1] 0.01385 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01297 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012563 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 IPH A 1 351 1 IPH IPH . D 3 IPH A 1 352 2 IPH IPH . E 3 IPH A 1 353 3 IPH IPH . F 4 HOH A 1 354 100 HOH HOH . F 4 HOH A 2 355 102 HOH HOH . F 4 HOH A 3 356 104 HOH HOH . F 4 HOH A 4 357 105 HOH HOH . F 4 HOH A 5 358 106 HOH HOH . F 4 HOH A 6 359 107 HOH HOH . F 4 HOH A 7 360 108 HOH HOH . F 4 HOH A 8 361 109 HOH HOH . F 4 HOH A 9 362 110 HOH HOH . F 4 HOH A 10 363 111 HOH HOH . F 4 HOH A 11 364 112 HOH HOH . F 4 HOH A 12 365 113 HOH HOH . F 4 HOH A 13 366 114 HOH HOH . F 4 HOH A 14 367 115 HOH HOH . F 4 HOH A 15 368 116 HOH HOH . F 4 HOH A 16 369 117 HOH HOH . F 4 HOH A 17 370 119 HOH HOH . F 4 HOH A 18 371 120 HOH HOH . F 4 HOH A 19 372 121 HOH HOH . F 4 HOH A 20 373 122 HOH HOH . F 4 HOH A 21 374 123 HOH HOH . F 4 HOH A 22 375 124 HOH HOH . F 4 HOH A 23 376 125 HOH HOH . F 4 HOH A 24 377 129 HOH HOH . F 4 HOH A 25 378 130 HOH HOH . F 4 HOH A 26 379 131 HOH HOH . F 4 HOH A 27 380 132 HOH HOH . F 4 HOH A 28 381 133 HOH HOH . F 4 HOH A 29 382 134 HOH HOH . F 4 HOH A 30 383 135 HOH HOH . F 4 HOH A 31 384 136 HOH HOH . F 4 HOH A 32 385 137 HOH HOH . F 4 HOH A 33 386 138 HOH HOH . F 4 HOH A 34 387 139 HOH HOH . F 4 HOH A 35 388 140 HOH HOH . F 4 HOH A 36 389 141 HOH HOH . F 4 HOH A 37 390 142 HOH HOH . F 4 HOH A 38 391 143 HOH HOH . F 4 HOH A 39 392 144 HOH HOH . F 4 HOH A 40 393 145 HOH HOH . F 4 HOH A 41 394 146 HOH HOH . F 4 HOH A 42 395 147 HOH HOH . F 4 HOH A 43 396 148 HOH HOH . F 4 HOH A 44 397 149 HOH HOH . F 4 HOH A 45 398 150 HOH HOH . F 4 HOH A 46 399 151 HOH HOH . F 4 HOH A 47 400 152 HOH HOH . F 4 HOH A 48 401 153 HOH HOH . F 4 HOH A 49 402 155 HOH HOH . F 4 HOH A 50 403 156 HOH HOH . F 4 HOH A 51 404 157 HOH HOH . F 4 HOH A 52 405 158 HOH HOH . F 4 HOH A 53 406 159 HOH HOH . F 4 HOH A 54 407 160 HOH HOH . F 4 HOH A 55 408 161 HOH HOH . F 4 HOH A 56 409 162 HOH HOH . F 4 HOH A 57 410 164 HOH HOH . F 4 HOH A 58 411 165 HOH HOH . F 4 HOH A 59 412 166 HOH HOH . F 4 HOH A 60 413 167 HOH HOH . F 4 HOH A 61 414 168 HOH HOH . F 4 HOH A 62 415 169 HOH HOH . F 4 HOH A 63 416 170 HOH HOH . F 4 HOH A 64 417 171 HOH HOH . F 4 HOH A 65 418 172 HOH HOH . F 4 HOH A 66 419 173 HOH HOH . F 4 HOH A 67 420 174 HOH HOH . F 4 HOH A 68 421 175 HOH HOH . F 4 HOH A 69 422 176 HOH HOH . F 4 HOH A 70 423 178 HOH HOH . F 4 HOH A 71 424 179 HOH HOH . F 4 HOH A 72 425 180 HOH HOH . F 4 HOH A 73 426 181 HOH HOH . F 4 HOH A 74 427 182 HOH HOH . F 4 HOH A 75 428 183 HOH HOH . F 4 HOH A 76 429 184 HOH HOH . F 4 HOH A 77 430 185 HOH HOH . F 4 HOH A 78 431 186 HOH HOH . F 4 HOH A 79 432 188 HOH HOH . F 4 HOH A 80 433 189 HOH HOH . F 4 HOH A 81 434 191 HOH HOH . F 4 HOH A 82 435 192 HOH HOH . F 4 HOH A 83 436 193 HOH HOH . F 4 HOH A 84 437 194 HOH HOH . F 4 HOH A 85 438 196 HOH HOH . F 4 HOH A 86 439 198 HOH HOH . F 4 HOH A 87 440 199 HOH HOH . F 4 HOH A 88 441 200 HOH HOH . F 4 HOH A 89 442 201 HOH HOH . F 4 HOH A 90 443 202 HOH HOH . F 4 HOH A 91 444 203 HOH HOH . F 4 HOH A 92 445 204 HOH HOH . F 4 HOH A 93 446 205 HOH HOH . F 4 HOH A 94 447 206 HOH HOH . F 4 HOH A 95 448 207 HOH HOH . F 4 HOH A 96 449 208 HOH HOH . G 4 HOH B 1 101 101 HOH HOH . G 4 HOH B 2 103 103 HOH HOH . G 4 HOH B 3 118 118 HOH HOH . G 4 HOH B 4 126 126 HOH HOH . G 4 HOH B 5 127 127 HOH HOH . G 4 HOH B 6 128 128 HOH HOH . G 4 HOH B 7 154 154 HOH HOH . G 4 HOH B 8 163 163 HOH HOH . G 4 HOH B 9 177 177 HOH HOH . G 4 HOH B 10 187 187 HOH HOH . G 4 HOH B 11 190 190 HOH HOH . G 4 HOH B 12 195 195 HOH HOH . G 4 HOH B 13 197 197 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 IPH . . . C 3 32.32 10.145 -3.657 1 29.93 ? C1 IPH 351 A 1 HETATM 2 C C2 IPH . . . C 3 31.905 10.078 -2.322 1 25.93 ? C2 IPH 351 A 1 HETATM 3 C C3 IPH . . . C 3 30.545 9.953 -2.037 1 28.84 ? C3 IPH 351 A 1 HETATM 4 C C4 IPH . . . C 3 29.617 9.942 -3.091 1 24.24 ? C4 IPH 351 A 1 HETATM 5 C C5 IPH . . . C 3 30.04 9.973 -4.417 1 31.6 ? C5 IPH 351 A 1 HETATM 6 C C6 IPH . . . C 3 31.406 10.034 -4.712 1 32.43 ? C6 IPH 351 A 1 HETATM 7 O O1 IPH . . . C 3 33.656 10.34 -3.946 1 33.66 ? O1 IPH 351 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 7 #