data_3NXO # _model_server_result.job_id '_DTxlFltGGuNaagyeXVuGA' _model_server_result.datetime_utc '2024-11-05 04:27:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nxo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":187}' # _entry.id 3NXO # _exptl.entry_id 3NXO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 324.377 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-[(1Z)-2-(2-methoxyphenyl)-3-methylbut-1-en-1-yl]furo[2,3-d]pyrimidine-2,4-diamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3NXO _cell.length_a 84.15 _cell.length_b 84.15 _cell.length_c 77.968 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NXO _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H20 N4 O2' _chem_comp.formula_weight 324.377 _chem_comp.id D2B _chem_comp.mon_nstd_flag . _chem_comp.name 5-[(1Z)-2-(2-methoxyphenyl)-3-methylbut-1-en-1-yl]furo[2,3-d]pyrimidine-2,4-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C6 N1 D2B doub 83 n y N1 C2 D2B sing 84 n y N3 C2 D2B doub 85 n y C2 NAD D2B sing 86 n n C4 N3 D2B sing 87 n y C5 C4 D2B doub 88 n y OAP C4 D2B sing 89 n y CAS C5 D2B sing 90 n y C5 C6 D2B sing 91 n y NAE C6 D2B sing 92 n n CAB OAO D2B sing 93 n n CAB HAB D2B sing 94 n n CAB HABA D2B sing 95 n n CAB HABB D2B sing 96 n n CAC CAY D2B sing 97 n n CAC HAC D2B sing 98 n n CAC HACA D2B sing 99 n n CAC HACB D2B sing 100 n n NAD HNAD D2B sing 101 n n NAD HNAA D2B sing 102 n n NAE HNAE D2B sing 103 n n NAE HNAB D2B sing 104 n n CAQ CAF D2B doub 105 n n CAF CAS D2B sing 106 n n CAF HAF D2B sing 107 n n CAI CAG D2B doub 108 n y CAG CAH D2B sing 109 n y CAG HAG D2B sing 110 n n CAJ CAH D2B doub 111 n y CAH HAH D2B sing 112 n n CAU CAI D2B sing 113 n y CAI HAI D2B sing 114 n n CAV CAJ D2B sing 115 n y CAJ HAJ D2B sing 116 n n CAS CAK D2B doub 117 n y CAK OAP D2B sing 118 n y CAK HAK D2B sing 119 n n CAL CAY D2B sing 120 z n CAL HAL D2B sing 121 n n CAL HALA D2B sing 122 n n CAL HALB D2B sing 123 n n OAO CAU D2B sing 124 n n CAY CAQ D2B sing 125 n n CAQ CAV D2B sing 126 n n CAU CAV D2B doub 127 n y CAY HAY D2B sing 128 n n # _atom_sites.entry_id 3NXO _atom_sites.fract_transf_matrix[1][1] 0.011884 _atom_sites.fract_transf_matrix[1][2] 0.006861 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013722 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012826 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 D2B A 1 187 1 D2B D2B . C 3 SO4 A 1 188 2 SO4 SO4 . D 3 SO4 A 1 189 3 SO4 SO4 . E 3 SO4 A 1 190 4 SO4 SO4 . F 3 SO4 A 1 191 5 SO4 SO4 . G 3 SO4 A 1 192 6 SO4 SO4 . H 4 NDP A 1 193 1 NDP NDP . I 5 HOH A 1 194 1 HOH HOH . I 5 HOH A 2 195 2 HOH HOH . I 5 HOH A 3 196 3 HOH HOH . I 5 HOH A 4 197 4 HOH HOH . I 5 HOH A 5 198 5 HOH HOH . I 5 HOH A 6 199 6 HOH HOH . I 5 HOH A 7 200 7 HOH HOH . I 5 HOH A 8 201 8 HOH HOH . I 5 HOH A 9 202 9 HOH HOH . I 5 HOH A 10 203 10 HOH HOH . I 5 HOH A 11 204 11 HOH HOH . I 5 HOH A 12 205 12 HOH HOH . I 5 HOH A 13 206 13 HOH HOH . I 5 HOH A 14 207 14 HOH HOH . I 5 HOH A 15 208 15 HOH HOH . I 5 HOH A 16 209 16 HOH HOH . I 5 HOH A 17 210 17 HOH HOH . I 5 HOH A 18 211 18 HOH HOH . I 5 HOH A 19 212 19 HOH HOH . I 5 HOH A 20 213 20 HOH HOH . I 5 HOH A 21 214 21 HOH HOH . I 5 HOH A 22 215 22 HOH HOH . I 5 HOH A 23 216 23 HOH HOH . I 5 HOH A 24 217 24 HOH HOH . I 5 HOH A 25 218 25 HOH HOH . I 5 HOH A 26 219 26 HOH HOH . I 5 HOH A 27 220 27 HOH HOH . I 5 HOH A 28 221 28 HOH HOH . I 5 HOH A 29 222 29 HOH HOH . I 5 HOH A 30 223 30 HOH HOH . I 5 HOH A 31 224 31 HOH HOH . I 5 HOH A 32 225 33 HOH HOH . I 5 HOH A 33 226 34 HOH HOH . I 5 HOH A 34 227 35 HOH HOH . I 5 HOH A 35 228 38 HOH HOH . I 5 HOH A 36 229 39 HOH HOH . I 5 HOH A 37 230 40 HOH HOH . I 5 HOH A 38 231 41 HOH HOH . I 5 HOH A 39 232 42 HOH HOH . I 5 HOH A 40 233 43 HOH HOH . I 5 HOH A 41 234 44 HOH HOH . I 5 HOH A 42 235 45 HOH HOH . I 5 HOH A 43 236 46 HOH HOH . I 5 HOH A 44 237 47 HOH HOH . I 5 HOH A 45 238 48 HOH HOH . I 5 HOH A 46 239 49 HOH HOH . I 5 HOH A 47 240 50 HOH HOH . I 5 HOH A 48 241 51 HOH HOH . I 5 HOH A 49 242 52 HOH HOH . I 5 HOH A 50 243 53 HOH HOH . I 5 HOH A 51 244 54 HOH HOH . I 5 HOH A 52 245 55 HOH HOH . I 5 HOH A 53 246 56 HOH HOH . I 5 HOH A 54 247 57 HOH HOH . I 5 HOH A 55 248 58 HOH HOH . I 5 HOH A 56 249 59 HOH HOH . I 5 HOH A 57 250 60 HOH HOH . I 5 HOH A 58 251 61 HOH HOH . I 5 HOH A 59 252 62 HOH HOH . I 5 HOH A 60 253 64 HOH HOH . I 5 HOH A 61 254 65 HOH HOH . I 5 HOH A 62 255 66 HOH HOH . I 5 HOH A 63 256 67 HOH HOH . I 5 HOH A 64 257 68 HOH HOH . I 5 HOH A 65 258 69 HOH HOH . I 5 HOH A 66 259 70 HOH HOH . I 5 HOH A 67 260 71 HOH HOH . I 5 HOH A 68 261 72 HOH HOH . I 5 HOH A 69 262 73 HOH HOH . I 5 HOH A 70 263 74 HOH HOH . I 5 HOH A 71 264 75 HOH HOH . I 5 HOH A 72 265 76 HOH HOH . I 5 HOH A 73 266 77 HOH HOH . I 5 HOH A 74 267 78 HOH HOH . I 5 HOH A 75 268 79 HOH HOH . I 5 HOH A 76 269 82 HOH HOH . I 5 HOH A 77 270 83 HOH HOH . I 5 HOH A 78 271 84 HOH HOH . I 5 HOH A 79 272 85 HOH HOH . I 5 HOH A 80 273 86 HOH HOH . I 5 HOH A 81 274 87 HOH HOH . I 5 HOH A 82 275 88 HOH HOH . I 5 HOH A 83 276 89 HOH HOH . I 5 HOH A 84 277 90 HOH HOH . I 5 HOH A 85 278 91 HOH HOH . I 5 HOH A 86 279 92 HOH HOH . I 5 HOH A 87 280 93 HOH HOH . I 5 HOH A 88 281 94 HOH HOH . I 5 HOH A 89 282 95 HOH HOH . I 5 HOH A 90 283 96 HOH HOH . I 5 HOH A 91 284 97 HOH HOH . I 5 HOH A 92 285 98 HOH HOH . I 5 HOH A 93 286 99 HOH HOH . I 5 HOH A 94 287 100 HOH HOH . I 5 HOH A 95 288 101 HOH HOH . I 5 HOH A 96 289 102 HOH HOH . I 5 HOH A 97 290 103 HOH HOH . I 5 HOH A 98 291 104 HOH HOH . I 5 HOH A 99 292 105 HOH HOH . I 5 HOH A 100 293 106 HOH HOH . I 5 HOH A 101 294 107 HOH HOH . I 5 HOH A 102 295 108 HOH HOH . I 5 HOH A 103 296 110 HOH HOH . I 5 HOH A 104 297 112 HOH HOH . I 5 HOH A 105 298 114 HOH HOH . I 5 HOH A 106 299 116 HOH HOH . I 5 HOH A 107 300 117 HOH HOH . I 5 HOH A 108 301 119 HOH HOH . I 5 HOH A 109 302 120 HOH HOH . I 5 HOH A 110 303 121 HOH HOH . I 5 HOH A 111 304 122 HOH HOH . I 5 HOH A 112 305 123 HOH HOH . I 5 HOH A 113 306 124 HOH HOH . I 5 HOH A 114 307 125 HOH HOH . I 5 HOH A 115 308 126 HOH HOH . I 5 HOH A 116 309 127 HOH HOH . I 5 HOH A 117 310 128 HOH HOH . I 5 HOH A 118 311 129 HOH HOH . I 5 HOH A 119 312 130 HOH HOH . I 5 HOH A 120 313 131 HOH HOH . I 5 HOH A 121 314 132 HOH HOH . I 5 HOH A 122 315 133 HOH HOH . I 5 HOH A 123 316 134 HOH HOH . I 5 HOH A 124 317 135 HOH HOH . I 5 HOH A 125 318 136 HOH HOH . I 5 HOH A 126 319 137 HOH HOH . I 5 HOH A 127 320 138 HOH HOH . I 5 HOH A 128 321 139 HOH HOH . I 5 HOH A 129 322 140 HOH HOH . I 5 HOH A 130 323 141 HOH HOH . I 5 HOH A 131 324 142 HOH HOH . I 5 HOH A 132 325 143 HOH HOH . I 5 HOH A 133 326 144 HOH HOH . I 5 HOH A 134 327 145 HOH HOH . I 5 HOH A 135 328 146 HOH HOH . I 5 HOH A 136 329 147 HOH HOH . I 5 HOH A 137 330 149 HOH HOH . I 5 HOH A 138 331 150 HOH HOH . I 5 HOH A 139 332 151 HOH HOH . I 5 HOH A 140 333 152 HOH HOH . I 5 HOH A 141 334 153 HOH HOH . I 5 HOH A 142 335 154 HOH HOH . I 5 HOH A 143 336 155 HOH HOH . I 5 HOH A 144 337 156 HOH HOH . I 5 HOH A 145 338 157 HOH HOH . I 5 HOH A 146 339 158 HOH HOH . I 5 HOH A 147 340 159 HOH HOH . I 5 HOH A 148 341 160 HOH HOH . I 5 HOH A 149 342 161 HOH HOH . I 5 HOH A 150 343 162 HOH HOH . I 5 HOH A 151 344 165 HOH HOH . I 5 HOH A 152 345 166 HOH HOH . I 5 HOH A 153 346 167 HOH HOH . I 5 HOH A 154 347 168 HOH HOH . I 5 HOH A 155 348 170 HOH HOH . I 5 HOH A 156 349 171 HOH HOH . I 5 HOH A 157 350 172 HOH HOH . I 5 HOH A 158 351 173 HOH HOH . I 5 HOH A 159 352 174 HOH HOH . I 5 HOH A 160 353 175 HOH HOH . I 5 HOH A 161 354 176 HOH HOH . I 5 HOH A 162 355 177 HOH HOH . I 5 HOH A 163 356 178 HOH HOH . I 5 HOH A 164 357 179 HOH HOH . I 5 HOH A 165 358 180 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 D2B . . . B 2 18.399 7.485 2.733 1 8.6 ? N1 D2B 187 A 1 HETATM 2 C C2 D2B . . . B 2 17.891 6.863 3.791 1 8.61 ? C2 D2B 187 A 1 HETATM 3 N N3 D2B . . . B 2 16.868 5.939 3.738 1 11.23 ? N3 D2B 187 A 1 HETATM 4 C C4 D2B . . . B 2 16.283 5.794 2.559 1 13.34 ? C4 D2B 187 A 1 HETATM 5 C C5 D2B . . . B 2 16.778 6.302 1.374 1 12.61 ? C5 D2B 187 A 1 HETATM 6 C C6 D2B . . . B 2 17.891 7.178 1.508 1 8.68 ? C6 D2B 187 A 1 HETATM 7 C CAB D2B . . . B 2 14.245 2.162 -2.81 1 30.25 ? CAB D2B 187 A 1 HETATM 8 C CAC D2B . . . B 2 15.278 5.566 -4.442 1 22.64 ? CAC D2B 187 A 1 HETATM 9 N NAD D2B . . . B 2 18.382 7.135 5 1 9.12 ? NAD D2B 187 A 1 HETATM 10 N NAE D2B . . . B 2 18.464 7.849 0.494 1 9.36 ? NAE D2B 187 A 1 HETATM 11 C CAF D2B . . . B 2 15.93 6.252 -0.991 1 24.28 ? CAF D2B 187 A 1 HETATM 12 C CAG D2B . . . B 2 10.946 4.734 -1.695 1 36.41 ? CAG D2B 187 A 1 HETATM 13 C CAH D2B . . . B 2 11.168 6.116 -1.629 1 35.12 ? CAH D2B 187 A 1 HETATM 14 C CAI D2B . . . B 2 12.01 3.841 -1.847 1 33.49 ? CAI D2B 187 A 1 HETATM 15 C CAJ D2B . . . B 2 12.481 6.595 -1.669 1 31.56 ? CAJ D2B 187 A 1 HETATM 16 C CAK D2B . . . B 2 14.938 5.085 0.969 1 19.63 ? CAK D2B 187 A 1 HETATM 17 C CAL D2B . . . B 2 15.71 7.953 -3.52 1 28.07 ? CAL D2B 187 A 1 HETATM 18 O OAO D2B . . . B 2 14.418 3.46 -2.081 1 24.52 ? OAO D2B 187 A 1 HETATM 19 O OAP D2B . . . B 2 15.227 4.944 2.366 1 18.34 ? OAP D2B 187 A 1 HETATM 20 C CAQ D2B . . . B 2 14.855 6.212 -1.916 1 23.7 ? CAQ D2B 187 A 1 HETATM 21 C CAS D2B . . . B 2 15.831 5.914 0.383 1 18.41 ? CAS D2B 187 A 1 HETATM 22 C CAU D2B . . . B 2 13.34 4.324 -1.93 1 28.18 ? CAU D2B 187 A 1 HETATM 23 C CAV D2B . . . B 2 13.561 5.709 -1.771 1 29.66 ? CAV D2B 187 A 1 HETATM 24 C CAY D2B . . . B 2 14.952 6.689 -3.398 1 27.05 ? CAY D2B 187 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 24 #