data_3NXO # _model_server_result.job_id x-deW0RNeZB9sykZyC_08A _model_server_result.datetime_utc '2024-11-22 08:33:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nxo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":193}' # _entry.id 3NXO # _exptl.entry_id 3NXO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3NXO _cell.length_a 84.15 _cell.length_b 84.15 _cell.length_c 77.968 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NXO _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 283 n n PA O2A NDP sing 284 n n PA O5B NDP sing 285 n n PA O3 NDP sing 286 n n O2A HOA2 NDP sing 287 n n O5B C5B NDP sing 288 n n C5B C4B NDP sing 289 n n C5B H51A NDP sing 290 n n C5B H52A NDP sing 291 n n C4B O4B NDP sing 292 n n C4B C3B NDP sing 293 n n C4B H4B NDP sing 294 n n O4B C1B NDP sing 295 n n C3B O3B NDP sing 296 n n C3B C2B NDP sing 297 n n C3B H3B NDP sing 298 n n O3B HO3A NDP sing 299 n n C2B O2B NDP sing 300 n n C2B C1B NDP sing 301 n n C2B H2B NDP sing 302 n n O2B P2B NDP sing 303 n n C1B N9A NDP sing 304 n n C1B H1B NDP sing 305 n n N9A C8A NDP sing 306 n y N9A C4A NDP sing 307 n y C8A N7A NDP doub 308 n y C8A H8A NDP sing 309 n n N7A C5A NDP sing 310 n y C5A C6A NDP sing 311 n y C5A C4A NDP doub 312 n y C6A N6A NDP sing 313 n n C6A N1A NDP doub 314 n y N6A H61A NDP sing 315 n n N6A H62A NDP sing 316 n n N1A C2A NDP sing 317 n y C2A N3A NDP doub 318 n y C2A H2A NDP sing 319 n n N3A C4A NDP sing 320 n y O3 PN NDP sing 321 n n PN O1N NDP doub 322 n n PN O2N NDP sing 323 n n PN O5D NDP sing 324 n n O2N H21N NDP sing 325 n n O5D C5D NDP sing 326 n n C5D C4D NDP sing 327 n n C5D H51N NDP sing 328 n n C5D H52N NDP sing 329 n n C4D O4D NDP sing 330 n n C4D C3D NDP sing 331 n n C4D H4D NDP sing 332 n n O4D C1D NDP sing 333 n n C3D O3D NDP sing 334 n n C3D C2D NDP sing 335 n n C3D H3D NDP sing 336 n n O3D HO3N NDP sing 337 n n C2D O2D NDP sing 338 n n C2D C1D NDP sing 339 n n C2D H2D NDP sing 340 n n O2D HO2N NDP sing 341 n n C1D N1N NDP sing 342 n n C1D H1D NDP sing 343 n n N1N C2N NDP sing 344 n n N1N C6N NDP sing 345 n n C2N C3N NDP doub 346 n n C2N H2N NDP sing 347 n n C3N C7N NDP sing 348 n n C3N C4N NDP sing 349 n n C7N O7N NDP doub 350 n n C7N N7N NDP sing 351 n n N7N H71N NDP sing 352 n n N7N H72N NDP sing 353 n n C4N C5N NDP sing 354 n n C4N H41N NDP sing 355 n n C4N H42N NDP sing 356 n n C5N C6N NDP doub 357 n n C5N H5N NDP sing 358 n n C6N H6N NDP sing 359 n n P2B O1X NDP doub 360 n n P2B O2X NDP sing 361 n n P2B O3X NDP sing 362 n n O2X HOP2 NDP sing 363 n n O3X HOP3 NDP sing 364 n n # _atom_sites.entry_id 3NXO _atom_sites.fract_transf_matrix[1][1] 0.011884 _atom_sites.fract_transf_matrix[1][2] 0.006861 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013722 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012826 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 D2B A 1 187 1 D2B D2B . C 3 SO4 A 1 188 2 SO4 SO4 . D 3 SO4 A 1 189 3 SO4 SO4 . E 3 SO4 A 1 190 4 SO4 SO4 . F 3 SO4 A 1 191 5 SO4 SO4 . G 3 SO4 A 1 192 6 SO4 SO4 . H 4 NDP A 1 193 1 NDP NDP . I 5 HOH A 1 194 1 HOH HOH . I 5 HOH A 2 195 2 HOH HOH . I 5 HOH A 3 196 3 HOH HOH . I 5 HOH A 4 197 4 HOH HOH . I 5 HOH A 5 198 5 HOH HOH . I 5 HOH A 6 199 6 HOH HOH . I 5 HOH A 7 200 7 HOH HOH . I 5 HOH A 8 201 8 HOH HOH . I 5 HOH A 9 202 9 HOH HOH . I 5 HOH A 10 203 10 HOH HOH . I 5 HOH A 11 204 11 HOH HOH . I 5 HOH A 12 205 12 HOH HOH . I 5 HOH A 13 206 13 HOH HOH . I 5 HOH A 14 207 14 HOH HOH . I 5 HOH A 15 208 15 HOH HOH . I 5 HOH A 16 209 16 HOH HOH . I 5 HOH A 17 210 17 HOH HOH . I 5 HOH A 18 211 18 HOH HOH . I 5 HOH A 19 212 19 HOH HOH . I 5 HOH A 20 213 20 HOH HOH . I 5 HOH A 21 214 21 HOH HOH . I 5 HOH A 22 215 22 HOH HOH . I 5 HOH A 23 216 23 HOH HOH . I 5 HOH A 24 217 24 HOH HOH . I 5 HOH A 25 218 25 HOH HOH . I 5 HOH A 26 219 26 HOH HOH . I 5 HOH A 27 220 27 HOH HOH . I 5 HOH A 28 221 28 HOH HOH . I 5 HOH A 29 222 29 HOH HOH . I 5 HOH A 30 223 30 HOH HOH . I 5 HOH A 31 224 31 HOH HOH . I 5 HOH A 32 225 33 HOH HOH . I 5 HOH A 33 226 34 HOH HOH . I 5 HOH A 34 227 35 HOH HOH . I 5 HOH A 35 228 38 HOH HOH . I 5 HOH A 36 229 39 HOH HOH . I 5 HOH A 37 230 40 HOH HOH . I 5 HOH A 38 231 41 HOH HOH . I 5 HOH A 39 232 42 HOH HOH . I 5 HOH A 40 233 43 HOH HOH . I 5 HOH A 41 234 44 HOH HOH . I 5 HOH A 42 235 45 HOH HOH . I 5 HOH A 43 236 46 HOH HOH . I 5 HOH A 44 237 47 HOH HOH . I 5 HOH A 45 238 48 HOH HOH . I 5 HOH A 46 239 49 HOH HOH . I 5 HOH A 47 240 50 HOH HOH . I 5 HOH A 48 241 51 HOH HOH . I 5 HOH A 49 242 52 HOH HOH . I 5 HOH A 50 243 53 HOH HOH . I 5 HOH A 51 244 54 HOH HOH . I 5 HOH A 52 245 55 HOH HOH . I 5 HOH A 53 246 56 HOH HOH . I 5 HOH A 54 247 57 HOH HOH . I 5 HOH A 55 248 58 HOH HOH . I 5 HOH A 56 249 59 HOH HOH . I 5 HOH A 57 250 60 HOH HOH . I 5 HOH A 58 251 61 HOH HOH . I 5 HOH A 59 252 62 HOH HOH . I 5 HOH A 60 253 64 HOH HOH . I 5 HOH A 61 254 65 HOH HOH . I 5 HOH A 62 255 66 HOH HOH . I 5 HOH A 63 256 67 HOH HOH . I 5 HOH A 64 257 68 HOH HOH . I 5 HOH A 65 258 69 HOH HOH . I 5 HOH A 66 259 70 HOH HOH . I 5 HOH A 67 260 71 HOH HOH . I 5 HOH A 68 261 72 HOH HOH . I 5 HOH A 69 262 73 HOH HOH . I 5 HOH A 70 263 74 HOH HOH . I 5 HOH A 71 264 75 HOH HOH . I 5 HOH A 72 265 76 HOH HOH . I 5 HOH A 73 266 77 HOH HOH . I 5 HOH A 74 267 78 HOH HOH . I 5 HOH A 75 268 79 HOH HOH . I 5 HOH A 76 269 82 HOH HOH . I 5 HOH A 77 270 83 HOH HOH . I 5 HOH A 78 271 84 HOH HOH . I 5 HOH A 79 272 85 HOH HOH . I 5 HOH A 80 273 86 HOH HOH . I 5 HOH A 81 274 87 HOH HOH . I 5 HOH A 82 275 88 HOH HOH . I 5 HOH A 83 276 89 HOH HOH . I 5 HOH A 84 277 90 HOH HOH . I 5 HOH A 85 278 91 HOH HOH . I 5 HOH A 86 279 92 HOH HOH . I 5 HOH A 87 280 93 HOH HOH . I 5 HOH A 88 281 94 HOH HOH . I 5 HOH A 89 282 95 HOH HOH . I 5 HOH A 90 283 96 HOH HOH . I 5 HOH A 91 284 97 HOH HOH . I 5 HOH A 92 285 98 HOH HOH . I 5 HOH A 93 286 99 HOH HOH . I 5 HOH A 94 287 100 HOH HOH . I 5 HOH A 95 288 101 HOH HOH . I 5 HOH A 96 289 102 HOH HOH . I 5 HOH A 97 290 103 HOH HOH . I 5 HOH A 98 291 104 HOH HOH . I 5 HOH A 99 292 105 HOH HOH . I 5 HOH A 100 293 106 HOH HOH . I 5 HOH A 101 294 107 HOH HOH . I 5 HOH A 102 295 108 HOH HOH . I 5 HOH A 103 296 110 HOH HOH . I 5 HOH A 104 297 112 HOH HOH . I 5 HOH A 105 298 114 HOH HOH . I 5 HOH A 106 299 116 HOH HOH . I 5 HOH A 107 300 117 HOH HOH . I 5 HOH A 108 301 119 HOH HOH . I 5 HOH A 109 302 120 HOH HOH . I 5 HOH A 110 303 121 HOH HOH . I 5 HOH A 111 304 122 HOH HOH . I 5 HOH A 112 305 123 HOH HOH . I 5 HOH A 113 306 124 HOH HOH . I 5 HOH A 114 307 125 HOH HOH . I 5 HOH A 115 308 126 HOH HOH . I 5 HOH A 116 309 127 HOH HOH . I 5 HOH A 117 310 128 HOH HOH . I 5 HOH A 118 311 129 HOH HOH . I 5 HOH A 119 312 130 HOH HOH . I 5 HOH A 120 313 131 HOH HOH . I 5 HOH A 121 314 132 HOH HOH . I 5 HOH A 122 315 133 HOH HOH . I 5 HOH A 123 316 134 HOH HOH . I 5 HOH A 124 317 135 HOH HOH . I 5 HOH A 125 318 136 HOH HOH . I 5 HOH A 126 319 137 HOH HOH . I 5 HOH A 127 320 138 HOH HOH . I 5 HOH A 128 321 139 HOH HOH . I 5 HOH A 129 322 140 HOH HOH . I 5 HOH A 130 323 141 HOH HOH . I 5 HOH A 131 324 142 HOH HOH . I 5 HOH A 132 325 143 HOH HOH . I 5 HOH A 133 326 144 HOH HOH . I 5 HOH A 134 327 145 HOH HOH . I 5 HOH A 135 328 146 HOH HOH . I 5 HOH A 136 329 147 HOH HOH . I 5 HOH A 137 330 149 HOH HOH . I 5 HOH A 138 331 150 HOH HOH . I 5 HOH A 139 332 151 HOH HOH . I 5 HOH A 140 333 152 HOH HOH . I 5 HOH A 141 334 153 HOH HOH . I 5 HOH A 142 335 154 HOH HOH . I 5 HOH A 143 336 155 HOH HOH . I 5 HOH A 144 337 156 HOH HOH . I 5 HOH A 145 338 157 HOH HOH . I 5 HOH A 146 339 158 HOH HOH . I 5 HOH A 147 340 159 HOH HOH . I 5 HOH A 148 341 160 HOH HOH . I 5 HOH A 149 342 161 HOH HOH . I 5 HOH A 150 343 162 HOH HOH . I 5 HOH A 151 344 165 HOH HOH . I 5 HOH A 152 345 166 HOH HOH . I 5 HOH A 153 346 167 HOH HOH . I 5 HOH A 154 347 168 HOH HOH . I 5 HOH A 155 348 170 HOH HOH . I 5 HOH A 156 349 171 HOH HOH . I 5 HOH A 157 350 172 HOH HOH . I 5 HOH A 158 351 173 HOH HOH . I 5 HOH A 159 352 174 HOH HOH . I 5 HOH A 160 353 175 HOH HOH . I 5 HOH A 161 354 176 HOH HOH . I 5 HOH A 162 355 177 HOH HOH . I 5 HOH A 163 356 178 HOH HOH . I 5 HOH A 164 357 179 HOH HOH . I 5 HOH A 165 358 180 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . H 4 22.381 6.026 -10.102 1 12.83 ? PA NDP 193 A 1 HETATM 2 O O1A NDP . . . H 4 23.356 6.973 -9.722 1 16.44 ? O1A NDP 193 A 1 HETATM 3 O O2A NDP . . . H 4 21.104 6.276 -9.525 1 12.38 ? O2A NDP 193 A 1 HETATM 4 O O5B NDP . . . H 4 22.14 5.969 -11.643 1 14.18 ? O5B NDP 193 A 1 HETATM 5 C C5B NDP . . . H 4 23.244 5.873 -12.622 1 19.92 ? C5B NDP 193 A 1 HETATM 6 C C4B NDP . . . H 4 22.701 6.395 -13.939 1 21.81 ? C4B NDP 193 A 1 HETATM 7 O O4B NDP . . . H 4 22.276 7.848 -13.618 1 24.66 ? O4B NDP 193 A 1 HETATM 8 C C3B NDP . . . H 4 23.934 6.541 -14.852 1 21.74 ? C3B NDP 193 A 1 HETATM 9 O O3B NDP . . . H 4 24.062 5.363 -15.72 1 25.77 ? O3B NDP 193 A 1 HETATM 10 C C2B NDP . . . H 4 23.626 7.896 -15.512 1 21.94 ? C2B NDP 193 A 1 HETATM 11 O O2B NDP . . . H 4 22.725 7.711 -16.496 1 19.23 ? O2B NDP 193 A 1 HETATM 12 C C1B NDP . . . H 4 22.836 8.739 -14.454 1 20.22 ? C1B NDP 193 A 1 HETATM 13 N N9A NDP . . . H 4 23.923 9.489 -13.694 1 24.91 ? N9A NDP 193 A 1 HETATM 14 C C8A NDP . . . H 4 24.425 9.172 -12.449 1 21.56 ? C8A NDP 193 A 1 HETATM 15 N N7A NDP . . . H 4 25.294 10.189 -12.155 1 25.44 ? N7A NDP 193 A 1 HETATM 16 C C5A NDP . . . H 4 25.244 11.194 -13.07 1 23.46 ? C5A NDP 193 A 1 HETATM 17 C C6A NDP . . . H 4 25.847 12.461 -13.287 1 27.72 ? C6A NDP 193 A 1 HETATM 18 N N6A NDP . . . H 4 26.729 13.111 -12.462 1 26.96 ? N6A NDP 193 A 1 HETATM 19 N N1A NDP . . . H 4 25.513 13.101 -14.445 1 25.08 ? N1A NDP 193 A 1 HETATM 20 C C2A NDP . . . H 4 24.648 12.609 -15.343 1 26.42 ? C2A NDP 193 A 1 HETATM 21 N N3A NDP . . . H 4 24.088 11.456 -15.194 1 25.14 ? N3A NDP 193 A 1 HETATM 22 C C4A NDP . . . H 4 24.388 10.711 -14.079 1 26.8 ? C4A NDP 193 A 1 HETATM 23 O O3 NDP . . . H 4 22.82 4.495 -9.852 1 16.5 ? O3 NDP 193 A 1 HETATM 24 P PN NDP . . . H 4 23.366 3.29 -8.816 1 17.86 ? PN NDP 193 A 1 HETATM 25 O O1N NDP . . . H 4 23.404 1.839 -9.431 1 22.4 ? O1N NDP 193 A 1 HETATM 26 O O2N NDP . . . H 4 24.579 3.885 -8.218 1 19.31 ? O2N NDP 193 A 1 HETATM 27 O O5D NDP . . . H 4 22.21 3.278 -7.82 1 17.66 ? O5D NDP 193 A 1 HETATM 28 C C5D NDP . . . H 4 20.979 2.709 -7.827 1 18.82 ? C5D NDP 193 A 1 HETATM 29 C C4D NDP . . . H 4 21.016 1.674 -6.658 1 24.02 ? C4D NDP 193 A 1 HETATM 30 O O4D NDP . . . H 4 21.291 2.25 -5.289 1 21.76 ? O4D NDP 193 A 1 HETATM 31 C C3D NDP . . . H 4 19.718 0.918 -6.524 1 26.25 ? C3D NDP 193 A 1 HETATM 32 O O3D NDP . . . H 4 20.079 -0.314 -5.878 1 21.43 ? O3D NDP 193 A 1 HETATM 33 C C2D NDP . . . H 4 18.885 1.67 -5.464 1 22.71 ? C2D NDP 193 A 1 HETATM 34 O O2D NDP . . . H 4 18.047 0.773 -4.633 1 22.61 ? O2D NDP 193 A 1 HETATM 35 C C1D NDP . . . H 4 20.012 2.073 -4.488 1 23.98 ? C1D NDP 193 A 1 HETATM 36 N N1N NDP . . . H 4 20 3.323 -3.688 1 19.66 ? N1N NDP 193 A 1 HETATM 37 C C2N NDP . . . H 4 20.087 3.108 -2.277 1 18.58 ? C2N NDP 193 A 1 HETATM 38 C C3N NDP . . . H 4 20.098 4.209 -1.46 1 22.41 ? C3N NDP 193 A 1 HETATM 39 C C7N NDP . . . H 4 20.233 3.902 0.04 1 19.07 ? C7N NDP 193 A 1 HETATM 40 O O7N NDP . . . H 4 20.477 2.669 0.598 1 19.69 ? O7N NDP 193 A 1 HETATM 41 N N7N NDP . . . H 4 20.171 4.934 0.755 1 12.73 ? N7N NDP 193 A 1 HETATM 42 C C4N NDP . . . H 4 20.021 5.51 -2.05 1 19.74 ? C4N NDP 193 A 1 HETATM 43 C C5N NDP . . . H 4 19.895 5.654 -3.489 1 22.92 ? C5N NDP 193 A 1 HETATM 44 C C6N NDP . . . H 4 19.88 4.591 -4.429 1 17.28 ? C6N NDP 193 A 1 HETATM 45 P P2B NDP . . . H 4 22.876 7.778 -18.011 1 13.32 ? P2B NDP 193 A 1 HETATM 46 O O1X NDP . . . H 4 23.646 9 -18.451 1 17.26 ? O1X NDP 193 A 1 HETATM 47 O O2X NDP . . . H 4 21.459 7.829 -18.509 1 15.32 ? O2X NDP 193 A 1 HETATM 48 O O3X NDP . . . H 4 23.566 6.525 -18.473 1 15.5 ? O3X NDP 193 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #