data_3NXP # _model_server_result.job_id fyG1BI7lZ3kHAtlJcpP6Bg _model_server_result.datetime_utc '2024-11-21 17:43:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nxp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 3NXP # _exptl.entry_id 3NXP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3NXP _cell.length_a 67.893 _cell.length_b 81.006 _cell.length_c 88.463 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NXP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 15 A CYS 170 1_555 A SG CYS 93 A CYS 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf2 A SG CYS 36 A CYS 191 1_555 A SG CYS 76 A CYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 A SG CYS 64 A CYS 219 1_555 A SG CYS 88 A CYS 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? disulf ? disulf4 A SG CYS 138 A CYS 293 1_555 A SG CYS 284 A CYS 522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf5 A SG CYS 193 A CYS 442 1_555 A SG CYS 209 A CYS 458 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf6 A SG CYS 338 A CYS 568 1_555 A SG CYS 352 A CYS 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? disulf ? disulf7 A SG CYS 366 A CYS 591 1_555 A SG CYS 396 A CYS 620 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? covale ? covale1 A ND2 ASN 218 A ASN 460 1_555 B C1 NAG . A NAG 701 1_555 G ? ? ? ? ? ? ? ? ? ? ? 1.446 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 250 n n C1 O1 NAG sing 251 n n C1 O5 NAG sing 252 n n C1 H1 NAG sing 253 n n C2 C3 NAG sing 254 n n C2 N2 NAG sing 255 n n C2 H2 NAG sing 256 n n C3 C4 NAG sing 257 n n C3 O3 NAG sing 258 n n C3 H3 NAG sing 259 n n C4 C5 NAG sing 260 n n C4 O4 NAG sing 261 n n C4 H4 NAG sing 262 n n C5 C6 NAG sing 263 n n C5 O5 NAG sing 264 n n C5 H5 NAG sing 265 n n C6 O6 NAG sing 266 n n C6 H61 NAG sing 267 n n C6 H62 NAG sing 268 n n C7 C8 NAG sing 269 n n C7 N2 NAG sing 270 n n C7 O7 NAG doub 271 n n C8 H81 NAG sing 272 n n C8 H82 NAG sing 273 n n C8 H83 NAG sing 274 n n N2 HN2 NAG sing 275 n n O1 HO1 NAG sing 276 n n O3 HO3 NAG sing 277 n n O4 HO4 NAG sing 278 n n O6 HO6 NAG sing 279 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 3NXP _atom_sites.fract_transf_matrix[1][1] 0.014729 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012345 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011304 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 701 701 NAG NAG . C 3 TRS A 1 702 702 TRS TRS . D 3 TRS A 1 703 703 TRS TRS . E 4 GOL A 1 704 704 GOL GOL . F 4 GOL A 1 705 705 GOL GOL . G 5 HOH A 1 1 1 HOH HOH . G 5 HOH A 2 2 2 HOH HOH . G 5 HOH A 3 3 3 HOH HOH . G 5 HOH A 4 4 4 HOH HOH . G 5 HOH A 5 5 5 HOH HOH . G 5 HOH A 6 6 6 HOH HOH . G 5 HOH A 7 7 7 HOH HOH . G 5 HOH A 8 8 8 HOH HOH . G 5 HOH A 9 9 9 HOH HOH . G 5 HOH A 10 10 10 HOH HOH . G 5 HOH A 11 11 11 HOH HOH . G 5 HOH A 12 12 12 HOH HOH . G 5 HOH A 13 13 13 HOH HOH . G 5 HOH A 14 14 14 HOH HOH . G 5 HOH A 15 15 15 HOH HOH . G 5 HOH A 16 16 16 HOH HOH . G 5 HOH A 17 17 17 HOH HOH . G 5 HOH A 18 18 18 HOH HOH . G 5 HOH A 19 19 19 HOH HOH . G 5 HOH A 20 20 20 HOH HOH . G 5 HOH A 21 21 21 HOH HOH . G 5 HOH A 22 22 22 HOH HOH . G 5 HOH A 23 23 23 HOH HOH . G 5 HOH A 24 24 24 HOH HOH . G 5 HOH A 25 25 25 HOH HOH . G 5 HOH A 26 26 26 HOH HOH . G 5 HOH A 27 27 27 HOH HOH . G 5 HOH A 28 28 28 HOH HOH . G 5 HOH A 29 29 29 HOH HOH . G 5 HOH A 30 30 30 HOH HOH . G 5 HOH A 31 31 31 HOH HOH . G 5 HOH A 32 32 32 HOH HOH . G 5 HOH A 33 33 33 HOH HOH . G 5 HOH A 34 34 34 HOH HOH . G 5 HOH A 35 35 35 HOH HOH . G 5 HOH A 36 36 36 HOH HOH . G 5 HOH A 37 37 37 HOH HOH . G 5 HOH A 38 38 38 HOH HOH . G 5 HOH A 39 39 39 HOH HOH . G 5 HOH A 40 40 40 HOH HOH . G 5 HOH A 41 41 41 HOH HOH . G 5 HOH A 42 42 42 HOH HOH . G 5 HOH A 43 43 43 HOH HOH . G 5 HOH A 44 44 44 HOH HOH . G 5 HOH A 45 45 45 HOH HOH . G 5 HOH A 46 46 46 HOH HOH . G 5 HOH A 47 47 47 HOH HOH . G 5 HOH A 48 48 48 HOH HOH . G 5 HOH A 49 49 49 HOH HOH . G 5 HOH A 50 50 50 HOH HOH . G 5 HOH A 51 51 51 HOH HOH . G 5 HOH A 52 52 52 HOH HOH . G 5 HOH A 53 53 53 HOH HOH . G 5 HOH A 54 54 54 HOH HOH . G 5 HOH A 55 55 55 HOH HOH . G 5 HOH A 56 56 56 HOH HOH . G 5 HOH A 57 57 57 HOH HOH . G 5 HOH A 58 58 58 HOH HOH . G 5 HOH A 59 59 59 HOH HOH . G 5 HOH A 60 60 60 HOH HOH . G 5 HOH A 61 61 61 HOH HOH . G 5 HOH A 62 62 62 HOH HOH . G 5 HOH A 63 63 63 HOH HOH . G 5 HOH A 64 64 64 HOH HOH . G 5 HOH A 65 65 65 HOH HOH . G 5 HOH A 66 66 66 HOH HOH . G 5 HOH A 67 67 67 HOH HOH . G 5 HOH A 68 68 68 HOH HOH . G 5 HOH A 69 69 69 HOH HOH . G 5 HOH A 70 70 70 HOH HOH . G 5 HOH A 71 71 71 HOH HOH . G 5 HOH A 72 72 72 HOH HOH . G 5 HOH A 73 73 73 HOH HOH . G 5 HOH A 74 74 74 HOH HOH . G 5 HOH A 75 75 75 HOH HOH . G 5 HOH A 76 76 76 HOH HOH . G 5 HOH A 77 77 77 HOH HOH . G 5 HOH A 78 78 78 HOH HOH . G 5 HOH A 79 79 79 HOH HOH . G 5 HOH A 80 80 80 HOH HOH . G 5 HOH A 81 81 81 HOH HOH . G 5 HOH A 82 82 82 HOH HOH . G 5 HOH A 83 83 83 HOH HOH . G 5 HOH A 84 84 84 HOH HOH . G 5 HOH A 85 85 85 HOH HOH . G 5 HOH A 86 86 86 HOH HOH . G 5 HOH A 87 87 87 HOH HOH . G 5 HOH A 88 88 88 HOH HOH . G 5 HOH A 89 89 89 HOH HOH . G 5 HOH A 90 90 90 HOH HOH . G 5 HOH A 91 91 91 HOH HOH . G 5 HOH A 92 92 92 HOH HOH . G 5 HOH A 93 93 93 HOH HOH . G 5 HOH A 94 94 94 HOH HOH . G 5 HOH A 95 95 95 HOH HOH . G 5 HOH A 96 96 96 HOH HOH . G 5 HOH A 97 97 97 HOH HOH . G 5 HOH A 98 98 98 HOH HOH . G 5 HOH A 99 99 99 HOH HOH . G 5 HOH A 100 100 100 HOH HOH . G 5 HOH A 101 101 101 HOH HOH . G 5 HOH A 102 102 102 HOH HOH . G 5 HOH A 103 103 103 HOH HOH . G 5 HOH A 104 104 104 HOH HOH . G 5 HOH A 105 105 105 HOH HOH . G 5 HOH A 106 106 106 HOH HOH . G 5 HOH A 107 107 107 HOH HOH . G 5 HOH A 108 108 108 HOH HOH . G 5 HOH A 109 109 109 HOH HOH . G 5 HOH A 110 110 110 HOH HOH . G 5 HOH A 111 111 111 HOH HOH . G 5 HOH A 112 112 112 HOH HOH . G 5 HOH A 113 113 113 HOH HOH . G 5 HOH A 114 114 114 HOH HOH . G 5 HOH A 115 115 115 HOH HOH . G 5 HOH A 116 116 116 HOH HOH . G 5 HOH A 117 117 117 HOH HOH . G 5 HOH A 118 118 118 HOH HOH . G 5 HOH A 119 119 119 HOH HOH . G 5 HOH A 120 120 120 HOH HOH . G 5 HOH A 121 121 121 HOH HOH . G 5 HOH A 122 122 122 HOH HOH . G 5 HOH A 123 123 123 HOH HOH . G 5 HOH A 124 124 124 HOH HOH . G 5 HOH A 125 125 125 HOH HOH . G 5 HOH A 126 126 126 HOH HOH . G 5 HOH A 127 127 127 HOH HOH . G 5 HOH A 128 128 128 HOH HOH . G 5 HOH A 129 129 129 HOH HOH . G 5 HOH A 130 130 130 HOH HOH . G 5 HOH A 131 131 131 HOH HOH . G 5 HOH A 132 132 132 HOH HOH . G 5 HOH A 133 133 133 HOH HOH . G 5 HOH A 134 134 134 HOH HOH . G 5 HOH A 135 135 135 HOH HOH . G 5 HOH A 136 136 136 HOH HOH . G 5 HOH A 137 137 137 HOH HOH . G 5 HOH A 138 138 138 HOH HOH . G 5 HOH A 139 139 139 HOH HOH . G 5 HOH A 140 140 140 HOH HOH . G 5 HOH A 141 141 141 HOH HOH . G 5 HOH A 142 142 142 HOH HOH . G 5 HOH A 143 143 143 HOH HOH . G 5 HOH A 144 144 144 HOH HOH . G 5 HOH A 145 145 145 HOH HOH . G 5 HOH A 146 146 146 HOH HOH . G 5 HOH A 147 147 147 HOH HOH . G 5 HOH A 148 148 148 HOH HOH . G 5 HOH A 149 149 149 HOH HOH . G 5 HOH A 150 150 150 HOH HOH . G 5 HOH A 151 151 151 HOH HOH . G 5 HOH A 152 152 152 HOH HOH . G 5 HOH A 153 153 153 HOH HOH . G 5 HOH A 154 154 154 HOH HOH . G 5 HOH A 155 155 155 HOH HOH . G 5 HOH A 156 648 648 HOH HOH . G 5 HOH A 157 649 649 HOH HOH . G 5 HOH A 158 650 650 HOH HOH . G 5 HOH A 159 651 651 HOH HOH . G 5 HOH A 160 652 652 HOH HOH . G 5 HOH A 161 653 653 HOH HOH . G 5 HOH A 162 654 654 HOH HOH . G 5 HOH A 163 655 655 HOH HOH . G 5 HOH A 164 656 656 HOH HOH . G 5 HOH A 165 657 657 HOH HOH . G 5 HOH A 166 658 658 HOH HOH . G 5 HOH A 167 659 659 HOH HOH . G 5 HOH A 168 660 660 HOH HOH . G 5 HOH A 169 661 661 HOH HOH . G 5 HOH A 170 662 662 HOH HOH . G 5 HOH A 171 663 663 HOH HOH . G 5 HOH A 172 664 664 HOH HOH . G 5 HOH A 173 665 665 HOH HOH . G 5 HOH A 174 666 666 HOH HOH . G 5 HOH A 175 667 667 HOH HOH . G 5 HOH A 176 668 668 HOH HOH . G 5 HOH A 177 669 669 HOH HOH . G 5 HOH A 178 670 670 HOH HOH . G 5 HOH A 179 671 671 HOH HOH . G 5 HOH A 180 672 672 HOH HOH . G 5 HOH A 181 673 673 HOH HOH . G 5 HOH A 182 674 674 HOH HOH . G 5 HOH A 183 675 675 HOH HOH . G 5 HOH A 184 676 676 HOH HOH . G 5 HOH A 185 677 677 HOH HOH . G 5 HOH A 186 678 678 HOH HOH . G 5 HOH A 187 679 679 HOH HOH . G 5 HOH A 188 680 680 HOH HOH . G 5 HOH A 189 681 681 HOH HOH . G 5 HOH A 190 682 682 HOH HOH . G 5 HOH A 191 683 683 HOH HOH . G 5 HOH A 192 684 684 HOH HOH . G 5 HOH A 193 685 685 HOH HOH . G 5 HOH A 194 686 686 HOH HOH . G 5 HOH A 195 687 687 HOH HOH . G 5 HOH A 196 688 688 HOH HOH . G 5 HOH A 197 689 689 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . B 2 18.035 -0.861 6.651 1 36.89 ? C1 NAG 701 A 1 HETATM 2 C C2 NAG . . . B 2 19.288 -1.715 6.428 1 40.21 ? C2 NAG 701 A 1 HETATM 3 C C3 NAG . . . B 2 20.546 -1.228 7.172 1 41.83 ? C3 NAG 701 A 1 HETATM 4 C C4 NAG . . . B 2 20.513 0.212 7.72 1 39.96 ? C4 NAG 701 A 1 HETATM 5 C C5 NAG . . . B 2 19.074 0.646 8 1 38.36 ? C5 NAG 701 A 1 HETATM 6 C C6 NAG . . . B 2 18.855 2.087 8.447 1 35.8 ? C6 NAG 701 A 1 HETATM 7 C C7 NAG . . . B 2 19.457 -4.125 6.094 1 43.11 ? C7 NAG 701 A 1 HETATM 8 C C8 NAG . . . B 2 19.187 -5.55 6.551 1 44.37 ? C8 NAG 701 A 1 HETATM 9 N N2 NAG . . . B 2 19.041 -3.099 6.848 1 43.47 ? N2 NAG 701 A 1 HETATM 10 O O3 NAG . . . B 2 21.707 -1.428 6.367 1 44.61 ? O3 NAG 701 A 1 HETATM 11 O O4 NAG . . . B 2 21.241 0.212 8.933 1 40.29 ? O4 NAG 701 A 1 HETATM 12 O O5 NAG . . . B 2 18.431 0.487 6.77 1 38.3 ? O5 NAG 701 A 1 HETATM 13 O O6 NAG . . . B 2 17.907 2.026 9.498 1 35.77 ? O6 NAG 701 A 1 HETATM 14 O O7 NAG . . . B 2 20.039 -3.883 5.039 1 38.83 ? O7 NAG 701 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 449 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #