data_3NXP
#
_model_server_result.job_id            UyDmOooYcW5_GMfdJdpKzw 
_model_server_result.datetime_utc      '2024-11-21 17:10:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3nxp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":702}' 
#
_entry.id    3NXP 
#
_exptl.entry_id    3NXP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              122.143 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3NXP 
_cell.length_a            67.893 
_cell.length_b            81.006 
_cell.length_c            88.463 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3NXP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 15 A CYS 170 1_555 A SG CYS 93 A CYS 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
disulf ? disulf2 A SG CYS 36 A CYS 191 1_555 A SG CYS 76 A CYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf3 A SG CYS 64 A CYS 219 1_555 A SG CYS 88 A CYS 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? 
disulf ? disulf4 A SG CYS 138 A CYS 293 1_555 A SG CYS 284 A CYS 522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf5 A SG CYS 193 A CYS 442 1_555 A SG CYS 209 A CYS 458 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf6 A SG CYS 338 A CYS 568 1_555 A SG CYS 352 A CYS 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? 
disulf ? disulf7 A SG CYS 366 A CYS 591 1_555 A SG CYS 396 A CYS 620 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
covale ? covale1 A ND2 ASN 218 A ASN 460 1_555 B C1 NAG . A NAG 701 1_555 G ? ? ? ? ? ? ? ? ? ? ? 1.446 ? 
#
_chem_comp.formula           'C4 H12 N O3 1' 
_chem_comp.formula_weight    122.143 
_chem_comp.id                TRS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'TRIS BUFFER' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C C1 TRS sing 377 n n 
C C2 TRS sing 378 n n 
C C3 TRS sing 379 n n 
C N TRS sing 380 n n 
C1 O1 TRS sing 381 n n 
C1 H11 TRS sing 382 n n 
C1 H12 TRS sing 383 n n 
C2 O2 TRS sing 384 n n 
C2 H21 TRS sing 385 n n 
C2 H22 TRS sing 386 n n 
C3 O3 TRS sing 387 n n 
C3 H31 TRS sing 388 n n 
C3 H32 TRS sing 389 n n 
N HN1 TRS sing 390 n n 
N HN2 TRS sing 391 n n 
N HN3 TRS sing 392 n n 
O1 HO1 TRS sing 393 n n 
O2 HO2 TRS sing 394 n n 
O3 HO3 TRS sing 395 n n 
#
_atom_sites.entry_id                     3NXP 
_atom_sites.fract_transf_matrix[1][1]    0.014729 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012345 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011304 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAG A 1 701 701 NAG NAG . 
C 3 TRS A 1 702 702 TRS TRS . 
D 3 TRS A 1 703 703 TRS TRS . 
E 4 GOL A 1 704 704 GOL GOL . 
F 4 GOL A 1 705 705 GOL GOL . 
G 5 HOH A 1 1 1 HOH HOH . 
G 5 HOH A 2 2 2 HOH HOH . 
G 5 HOH A 3 3 3 HOH HOH . 
G 5 HOH A 4 4 4 HOH HOH . 
G 5 HOH A 5 5 5 HOH HOH . 
G 5 HOH A 6 6 6 HOH HOH . 
G 5 HOH A 7 7 7 HOH HOH . 
G 5 HOH A 8 8 8 HOH HOH . 
G 5 HOH A 9 9 9 HOH HOH . 
G 5 HOH A 10 10 10 HOH HOH . 
G 5 HOH A 11 11 11 HOH HOH . 
G 5 HOH A 12 12 12 HOH HOH . 
G 5 HOH A 13 13 13 HOH HOH . 
G 5 HOH A 14 14 14 HOH HOH . 
G 5 HOH A 15 15 15 HOH HOH . 
G 5 HOH A 16 16 16 HOH HOH . 
G 5 HOH A 17 17 17 HOH HOH . 
G 5 HOH A 18 18 18 HOH HOH . 
G 5 HOH A 19 19 19 HOH HOH . 
G 5 HOH A 20 20 20 HOH HOH . 
G 5 HOH A 21 21 21 HOH HOH . 
G 5 HOH A 22 22 22 HOH HOH . 
G 5 HOH A 23 23 23 HOH HOH . 
G 5 HOH A 24 24 24 HOH HOH . 
G 5 HOH A 25 25 25 HOH HOH . 
G 5 HOH A 26 26 26 HOH HOH . 
G 5 HOH A 27 27 27 HOH HOH . 
G 5 HOH A 28 28 28 HOH HOH . 
G 5 HOH A 29 29 29 HOH HOH . 
G 5 HOH A 30 30 30 HOH HOH . 
G 5 HOH A 31 31 31 HOH HOH . 
G 5 HOH A 32 32 32 HOH HOH . 
G 5 HOH A 33 33 33 HOH HOH . 
G 5 HOH A 34 34 34 HOH HOH . 
G 5 HOH A 35 35 35 HOH HOH . 
G 5 HOH A 36 36 36 HOH HOH . 
G 5 HOH A 37 37 37 HOH HOH . 
G 5 HOH A 38 38 38 HOH HOH . 
G 5 HOH A 39 39 39 HOH HOH . 
G 5 HOH A 40 40 40 HOH HOH . 
G 5 HOH A 41 41 41 HOH HOH . 
G 5 HOH A 42 42 42 HOH HOH . 
G 5 HOH A 43 43 43 HOH HOH . 
G 5 HOH A 44 44 44 HOH HOH . 
G 5 HOH A 45 45 45 HOH HOH . 
G 5 HOH A 46 46 46 HOH HOH . 
G 5 HOH A 47 47 47 HOH HOH . 
G 5 HOH A 48 48 48 HOH HOH . 
G 5 HOH A 49 49 49 HOH HOH . 
G 5 HOH A 50 50 50 HOH HOH . 
G 5 HOH A 51 51 51 HOH HOH . 
G 5 HOH A 52 52 52 HOH HOH . 
G 5 HOH A 53 53 53 HOH HOH . 
G 5 HOH A 54 54 54 HOH HOH . 
G 5 HOH A 55 55 55 HOH HOH . 
G 5 HOH A 56 56 56 HOH HOH . 
G 5 HOH A 57 57 57 HOH HOH . 
G 5 HOH A 58 58 58 HOH HOH . 
G 5 HOH A 59 59 59 HOH HOH . 
G 5 HOH A 60 60 60 HOH HOH . 
G 5 HOH A 61 61 61 HOH HOH . 
G 5 HOH A 62 62 62 HOH HOH . 
G 5 HOH A 63 63 63 HOH HOH . 
G 5 HOH A 64 64 64 HOH HOH . 
G 5 HOH A 65 65 65 HOH HOH . 
G 5 HOH A 66 66 66 HOH HOH . 
G 5 HOH A 67 67 67 HOH HOH . 
G 5 HOH A 68 68 68 HOH HOH . 
G 5 HOH A 69 69 69 HOH HOH . 
G 5 HOH A 70 70 70 HOH HOH . 
G 5 HOH A 71 71 71 HOH HOH . 
G 5 HOH A 72 72 72 HOH HOH . 
G 5 HOH A 73 73 73 HOH HOH . 
G 5 HOH A 74 74 74 HOH HOH . 
G 5 HOH A 75 75 75 HOH HOH . 
G 5 HOH A 76 76 76 HOH HOH . 
G 5 HOH A 77 77 77 HOH HOH . 
G 5 HOH A 78 78 78 HOH HOH . 
G 5 HOH A 79 79 79 HOH HOH . 
G 5 HOH A 80 80 80 HOH HOH . 
G 5 HOH A 81 81 81 HOH HOH . 
G 5 HOH A 82 82 82 HOH HOH . 
G 5 HOH A 83 83 83 HOH HOH . 
G 5 HOH A 84 84 84 HOH HOH . 
G 5 HOH A 85 85 85 HOH HOH . 
G 5 HOH A 86 86 86 HOH HOH . 
G 5 HOH A 87 87 87 HOH HOH . 
G 5 HOH A 88 88 88 HOH HOH . 
G 5 HOH A 89 89 89 HOH HOH . 
G 5 HOH A 90 90 90 HOH HOH . 
G 5 HOH A 91 91 91 HOH HOH . 
G 5 HOH A 92 92 92 HOH HOH . 
G 5 HOH A 93 93 93 HOH HOH . 
G 5 HOH A 94 94 94 HOH HOH . 
G 5 HOH A 95 95 95 HOH HOH . 
G 5 HOH A 96 96 96 HOH HOH . 
G 5 HOH A 97 97 97 HOH HOH . 
G 5 HOH A 98 98 98 HOH HOH . 
G 5 HOH A 99 99 99 HOH HOH . 
G 5 HOH A 100 100 100 HOH HOH . 
G 5 HOH A 101 101 101 HOH HOH . 
G 5 HOH A 102 102 102 HOH HOH . 
G 5 HOH A 103 103 103 HOH HOH . 
G 5 HOH A 104 104 104 HOH HOH . 
G 5 HOH A 105 105 105 HOH HOH . 
G 5 HOH A 106 106 106 HOH HOH . 
G 5 HOH A 107 107 107 HOH HOH . 
G 5 HOH A 108 108 108 HOH HOH . 
G 5 HOH A 109 109 109 HOH HOH . 
G 5 HOH A 110 110 110 HOH HOH . 
G 5 HOH A 111 111 111 HOH HOH . 
G 5 HOH A 112 112 112 HOH HOH . 
G 5 HOH A 113 113 113 HOH HOH . 
G 5 HOH A 114 114 114 HOH HOH . 
G 5 HOH A 115 115 115 HOH HOH . 
G 5 HOH A 116 116 116 HOH HOH . 
G 5 HOH A 117 117 117 HOH HOH . 
G 5 HOH A 118 118 118 HOH HOH . 
G 5 HOH A 119 119 119 HOH HOH . 
G 5 HOH A 120 120 120 HOH HOH . 
G 5 HOH A 121 121 121 HOH HOH . 
G 5 HOH A 122 122 122 HOH HOH . 
G 5 HOH A 123 123 123 HOH HOH . 
G 5 HOH A 124 124 124 HOH HOH . 
G 5 HOH A 125 125 125 HOH HOH . 
G 5 HOH A 126 126 126 HOH HOH . 
G 5 HOH A 127 127 127 HOH HOH . 
G 5 HOH A 128 128 128 HOH HOH . 
G 5 HOH A 129 129 129 HOH HOH . 
G 5 HOH A 130 130 130 HOH HOH . 
G 5 HOH A 131 131 131 HOH HOH . 
G 5 HOH A 132 132 132 HOH HOH . 
G 5 HOH A 133 133 133 HOH HOH . 
G 5 HOH A 134 134 134 HOH HOH . 
G 5 HOH A 135 135 135 HOH HOH . 
G 5 HOH A 136 136 136 HOH HOH . 
G 5 HOH A 137 137 137 HOH HOH . 
G 5 HOH A 138 138 138 HOH HOH . 
G 5 HOH A 139 139 139 HOH HOH . 
G 5 HOH A 140 140 140 HOH HOH . 
G 5 HOH A 141 141 141 HOH HOH . 
G 5 HOH A 142 142 142 HOH HOH . 
G 5 HOH A 143 143 143 HOH HOH . 
G 5 HOH A 144 144 144 HOH HOH . 
G 5 HOH A 145 145 145 HOH HOH . 
G 5 HOH A 146 146 146 HOH HOH . 
G 5 HOH A 147 147 147 HOH HOH . 
G 5 HOH A 148 148 148 HOH HOH . 
G 5 HOH A 149 149 149 HOH HOH . 
G 5 HOH A 150 150 150 HOH HOH . 
G 5 HOH A 151 151 151 HOH HOH . 
G 5 HOH A 152 152 152 HOH HOH . 
G 5 HOH A 153 153 153 HOH HOH . 
G 5 HOH A 154 154 154 HOH HOH . 
G 5 HOH A 155 155 155 HOH HOH . 
G 5 HOH A 156 648 648 HOH HOH . 
G 5 HOH A 157 649 649 HOH HOH . 
G 5 HOH A 158 650 650 HOH HOH . 
G 5 HOH A 159 651 651 HOH HOH . 
G 5 HOH A 160 652 652 HOH HOH . 
G 5 HOH A 161 653 653 HOH HOH . 
G 5 HOH A 162 654 654 HOH HOH . 
G 5 HOH A 163 655 655 HOH HOH . 
G 5 HOH A 164 656 656 HOH HOH . 
G 5 HOH A 165 657 657 HOH HOH . 
G 5 HOH A 166 658 658 HOH HOH . 
G 5 HOH A 167 659 659 HOH HOH . 
G 5 HOH A 168 660 660 HOH HOH . 
G 5 HOH A 169 661 661 HOH HOH . 
G 5 HOH A 170 662 662 HOH HOH . 
G 5 HOH A 171 663 663 HOH HOH . 
G 5 HOH A 172 664 664 HOH HOH . 
G 5 HOH A 173 665 665 HOH HOH . 
G 5 HOH A 174 666 666 HOH HOH . 
G 5 HOH A 175 667 667 HOH HOH . 
G 5 HOH A 176 668 668 HOH HOH . 
G 5 HOH A 177 669 669 HOH HOH . 
G 5 HOH A 178 670 670 HOH HOH . 
G 5 HOH A 179 671 671 HOH HOH . 
G 5 HOH A 180 672 672 HOH HOH . 
G 5 HOH A 181 673 673 HOH HOH . 
G 5 HOH A 182 674 674 HOH HOH . 
G 5 HOH A 183 675 675 HOH HOH . 
G 5 HOH A 184 676 676 HOH HOH . 
G 5 HOH A 185 677 677 HOH HOH . 
G 5 HOH A 186 678 678 HOH HOH . 
G 5 HOH A 187 679 679 HOH HOH . 
G 5 HOH A 188 680 680 HOH HOH . 
G 5 HOH A 189 681 681 HOH HOH . 
G 5 HOH A 190 682 682 HOH HOH . 
G 5 HOH A 191 683 683 HOH HOH . 
G 5 HOH A 192 684 684 HOH HOH . 
G 5 HOH A 193 685 685 HOH HOH . 
G 5 HOH A 194 686 686 HOH HOH . 
G 5 HOH A 195 687 687 HOH HOH . 
G 5 HOH A 196 688 688 HOH HOH . 
G 5 HOH A 197 689 689 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C TRS . . . C 3 23.032 -19.821 -0.505 1 26.13 ? C TRS 702 A 1 
HETATM 2 C C1 TRS . . . C 3 23.246 -19.934 1.002 1 25.59 ? C1 TRS 702 A 1 
HETATM 3 C C2 TRS . . . C 3 22.271 -18.53 -0.821 1 25.5 ? C2 TRS 702 A 1 
HETATM 4 C C3 TRS . . . C 3 22.374 -21.087 -1.022 1 26.53 ? C3 TRS 702 A 1 
HETATM 5 N N TRS . . . C 3 24.326 -19.809 -1.216 1 25.92 ? N TRS 702 A 1 
HETATM 6 O O1 TRS . . . C 3 24.144 -21.002 1.275 1 26.75 ? O1 TRS 702 A 1 
HETATM 7 O O2 TRS . . . C 3 21.049 -18.417 -0.1 1 24.35 ? O2 TRS 702 A 1 
HETATM 8 O O3 TRS . . . C 3 21.987 -20.83 -2.336 1 27.41 ? O3 TRS 702 A 1 
#
_model_server_stats.io_time_ms              80 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           433 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           8 
#