data_3NXR # _model_server_result.job_id g6XyxnpFS7N2_SqqjBj9Ow _model_server_result.datetime_utc '2024-11-08 15:38:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nxr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":192}' # _entry.id 3NXR # _exptl.entry_id 3NXR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 338.404 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-[(1E)-2-(2-methoxyphenyl)-4-methylpent-1-en-1-yl]furo[2,3-d]pyrimidine-2,4-diamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3NXR _cell.length_a 84.5 _cell.length_b 84.5 _cell.length_c 78.131 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NXR _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H22 N4 O2' _chem_comp.formula_weight 338.404 _chem_comp.id D2D _chem_comp.mon_nstd_flag . _chem_comp.name 5-[(1E)-2-(2-methoxyphenyl)-4-methylpent-1-en-1-yl]furo[2,3-d]pyrimidine-2,4-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 D2D doub 83 n y N1 C6 D2D sing 84 n y C2 N3 D2D sing 85 n y C2 NAC D2D sing 86 n n N3 C4 D2D doub 87 n y C4 C5 D2D sing 88 n y C4 OAP D2D sing 89 n y C5 C6 D2D doub 90 n y C5 CAS D2D sing 91 n y C6 NAD D2D sing 92 n n CAA CAK D2D sing 93 n n CAA HAA D2D sing 94 n n CAA HAAA D2D sing 95 n n CAA HAAB D2D sing 96 n n CAB OAO D2D sing 97 n n CAB HAB D2D sing 98 n n CAB HABA D2D sing 99 n n CAB HABB D2D sing 100 n n NAC HNAC D2D sing 101 n n NAC HNAA D2D sing 102 n n NAD HNAD D2D sing 103 n n NAD HNAB D2D sing 104 n n CAE CAQ D2D doub 105 e n CAE CAS D2D sing 106 n n CAE HAE D2D sing 107 n n CAF CAG D2D doub 108 n y CAF CAH D2D sing 109 n y CAF HAF D2D sing 110 n n CAG CAI D2D sing 111 n y CAG HAG D2D sing 112 n n CAH CAU D2D doub 113 n y CAH HAH D2D sing 114 n n CAI CAV D2D doub 115 n y CAI HAI D2D sing 116 n n CAJ OAP D2D sing 117 n y CAJ CAS D2D doub 118 n y CAJ HAJ D2D sing 119 n n CAK CAL D2D sing 120 n n CAK C19 D2D sing 121 n n CAK HAK D2D sing 122 n n CAL CAQ D2D sing 123 n n CAL HAL D2D sing 124 n n CAL HALA D2D sing 125 n n OAO CAU D2D sing 126 n n CAQ CAV D2D sing 127 n n CAU CAV D2D sing 128 n y C19 H20 D2D sing 129 n n C19 H21 D2D sing 130 n n C19 H22 D2D sing 131 n n # _atom_sites.entry_id 3NXR _atom_sites.fract_transf_matrix[1][1] 0.011834 _atom_sites.fract_transf_matrix[1][2] 0.006833 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013665 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012799 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NDP A 1 187 1 NDP NDP . C 3 SO4 A 1 188 1 SO4 SO4 . D 3 SO4 A 1 189 2 SO4 SO4 . E 3 SO4 A 1 190 3 SO4 SO4 . F 3 SO4 A 1 191 4 SO4 SO4 . G 4 D2D A 1 192 1 D2D D2D . H 5 HOH A 1 193 193 HOH HOH . H 5 HOH A 2 194 194 HOH HOH . H 5 HOH A 3 195 195 HOH HOH . H 5 HOH A 4 196 196 HOH HOH . H 5 HOH A 5 197 1 HOH HOH . H 5 HOH A 6 198 198 HOH HOH . H 5 HOH A 7 199 199 HOH HOH . H 5 HOH A 8 200 200 HOH HOH . H 5 HOH A 9 201 201 HOH HOH . H 5 HOH A 10 202 202 HOH HOH . H 5 HOH A 11 203 2 HOH HOH . H 5 HOH A 12 204 3 HOH HOH . H 5 HOH A 13 205 5 HOH HOH . H 5 HOH A 14 206 6 HOH HOH . H 5 HOH A 15 207 7 HOH HOH . H 5 HOH A 16 208 8 HOH HOH . H 5 HOH A 17 209 9 HOH HOH . H 5 HOH A 18 210 10 HOH HOH . H 5 HOH A 19 211 11 HOH HOH . H 5 HOH A 20 212 12 HOH HOH . H 5 HOH A 21 213 13 HOH HOH . H 5 HOH A 22 214 14 HOH HOH . H 5 HOH A 23 215 15 HOH HOH . H 5 HOH A 24 216 16 HOH HOH . H 5 HOH A 25 217 17 HOH HOH . H 5 HOH A 26 218 18 HOH HOH . H 5 HOH A 27 219 19 HOH HOH . H 5 HOH A 28 220 20 HOH HOH . H 5 HOH A 29 221 21 HOH HOH . H 5 HOH A 30 222 22 HOH HOH . H 5 HOH A 31 223 23 HOH HOH . H 5 HOH A 32 224 24 HOH HOH . H 5 HOH A 33 225 25 HOH HOH . H 5 HOH A 34 226 26 HOH HOH . H 5 HOH A 35 227 27 HOH HOH . H 5 HOH A 36 228 28 HOH HOH . H 5 HOH A 37 229 29 HOH HOH . H 5 HOH A 38 230 30 HOH HOH . H 5 HOH A 39 231 31 HOH HOH . H 5 HOH A 40 232 32 HOH HOH . H 5 HOH A 41 233 33 HOH HOH . H 5 HOH A 42 234 34 HOH HOH . H 5 HOH A 43 235 35 HOH HOH . H 5 HOH A 44 236 36 HOH HOH . H 5 HOH A 45 237 37 HOH HOH . H 5 HOH A 46 238 38 HOH HOH . H 5 HOH A 47 239 39 HOH HOH . H 5 HOH A 48 240 40 HOH HOH . H 5 HOH A 49 241 41 HOH HOH . H 5 HOH A 50 242 42 HOH HOH . H 5 HOH A 51 243 43 HOH HOH . H 5 HOH A 52 244 44 HOH HOH . H 5 HOH A 53 245 45 HOH HOH . H 5 HOH A 54 246 46 HOH HOH . H 5 HOH A 55 247 47 HOH HOH . H 5 HOH A 56 248 48 HOH HOH . H 5 HOH A 57 249 49 HOH HOH . H 5 HOH A 58 250 50 HOH HOH . H 5 HOH A 59 251 51 HOH HOH . H 5 HOH A 60 252 52 HOH HOH . H 5 HOH A 61 253 53 HOH HOH . H 5 HOH A 62 254 54 HOH HOH . H 5 HOH A 63 255 56 HOH HOH . H 5 HOH A 64 256 57 HOH HOH . H 5 HOH A 65 257 58 HOH HOH . H 5 HOH A 66 258 59 HOH HOH . H 5 HOH A 67 259 60 HOH HOH . H 5 HOH A 68 260 61 HOH HOH . H 5 HOH A 69 261 62 HOH HOH . H 5 HOH A 70 262 63 HOH HOH . H 5 HOH A 71 263 64 HOH HOH . H 5 HOH A 72 264 65 HOH HOH . H 5 HOH A 73 265 66 HOH HOH . H 5 HOH A 74 266 67 HOH HOH . H 5 HOH A 75 267 68 HOH HOH . H 5 HOH A 76 268 69 HOH HOH . H 5 HOH A 77 269 70 HOH HOH . H 5 HOH A 78 270 71 HOH HOH . H 5 HOH A 79 271 72 HOH HOH . H 5 HOH A 80 272 73 HOH HOH . H 5 HOH A 81 273 74 HOH HOH . H 5 HOH A 82 274 75 HOH HOH . H 5 HOH A 83 275 76 HOH HOH . H 5 HOH A 84 276 77 HOH HOH . H 5 HOH A 85 277 78 HOH HOH . H 5 HOH A 86 278 80 HOH HOH . H 5 HOH A 87 279 81 HOH HOH . H 5 HOH A 88 280 82 HOH HOH . H 5 HOH A 89 281 83 HOH HOH . H 5 HOH A 90 282 84 HOH HOH . H 5 HOH A 91 283 85 HOH HOH . H 5 HOH A 92 284 86 HOH HOH . H 5 HOH A 93 285 89 HOH HOH . H 5 HOH A 94 286 90 HOH HOH . H 5 HOH A 95 287 91 HOH HOH . H 5 HOH A 96 288 92 HOH HOH . H 5 HOH A 97 289 93 HOH HOH . H 5 HOH A 98 290 94 HOH HOH . H 5 HOH A 99 291 95 HOH HOH . H 5 HOH A 100 292 96 HOH HOH . H 5 HOH A 101 293 97 HOH HOH . H 5 HOH A 102 294 98 HOH HOH . H 5 HOH A 103 295 99 HOH HOH . H 5 HOH A 104 296 100 HOH HOH . H 5 HOH A 105 297 101 HOH HOH . H 5 HOH A 106 298 102 HOH HOH . H 5 HOH A 107 299 103 HOH HOH . H 5 HOH A 108 300 104 HOH HOH . H 5 HOH A 109 301 105 HOH HOH . H 5 HOH A 110 302 107 HOH HOH . H 5 HOH A 111 303 108 HOH HOH . H 5 HOH A 112 304 109 HOH HOH . H 5 HOH A 113 305 110 HOH HOH . H 5 HOH A 114 306 111 HOH HOH . H 5 HOH A 115 307 112 HOH HOH . H 5 HOH A 116 308 113 HOH HOH . H 5 HOH A 117 309 115 HOH HOH . H 5 HOH A 118 310 116 HOH HOH . H 5 HOH A 119 311 117 HOH HOH . H 5 HOH A 120 312 118 HOH HOH . H 5 HOH A 121 313 119 HOH HOH . H 5 HOH A 122 314 120 HOH HOH . H 5 HOH A 123 315 121 HOH HOH . H 5 HOH A 124 316 122 HOH HOH . H 5 HOH A 125 317 123 HOH HOH . H 5 HOH A 126 318 124 HOH HOH . H 5 HOH A 127 319 125 HOH HOH . H 5 HOH A 128 320 126 HOH HOH . H 5 HOH A 129 321 127 HOH HOH . H 5 HOH A 130 322 128 HOH HOH . H 5 HOH A 131 323 129 HOH HOH . H 5 HOH A 132 324 130 HOH HOH . H 5 HOH A 133 325 131 HOH HOH . H 5 HOH A 134 326 132 HOH HOH . H 5 HOH A 135 327 133 HOH HOH . H 5 HOH A 136 328 134 HOH HOH . H 5 HOH A 137 329 135 HOH HOH . H 5 HOH A 138 330 136 HOH HOH . H 5 HOH A 139 331 137 HOH HOH . H 5 HOH A 140 332 138 HOH HOH . H 5 HOH A 141 333 139 HOH HOH . H 5 HOH A 142 334 140 HOH HOH . H 5 HOH A 143 335 142 HOH HOH . H 5 HOH A 144 336 143 HOH HOH . H 5 HOH A 145 337 144 HOH HOH . H 5 HOH A 146 338 147 HOH HOH . H 5 HOH A 147 339 148 HOH HOH . H 5 HOH A 148 340 149 HOH HOH . H 5 HOH A 149 341 151 HOH HOH . H 5 HOH A 150 342 152 HOH HOH . H 5 HOH A 151 343 153 HOH HOH . H 5 HOH A 152 344 154 HOH HOH . H 5 HOH A 153 345 155 HOH HOH . H 5 HOH A 154 346 156 HOH HOH . H 5 HOH A 155 347 157 HOH HOH . H 5 HOH A 156 348 158 HOH HOH . H 5 HOH A 157 349 159 HOH HOH . H 5 HOH A 158 350 160 HOH HOH . H 5 HOH A 159 351 161 HOH HOH . H 5 HOH A 160 352 162 HOH HOH . H 5 HOH A 161 353 163 HOH HOH . H 5 HOH A 162 354 164 HOH HOH . H 5 HOH A 163 355 165 HOH HOH . H 5 HOH A 164 356 166 HOH HOH . H 5 HOH A 165 357 167 HOH HOH . H 5 HOH A 166 358 169 HOH HOH . H 5 HOH A 167 359 170 HOH HOH . H 5 HOH A 168 360 171 HOH HOH . H 5 HOH A 169 361 172 HOH HOH . H 5 HOH A 170 362 173 HOH HOH . H 5 HOH A 171 363 174 HOH HOH . H 5 HOH A 172 364 175 HOH HOH . H 5 HOH A 173 365 176 HOH HOH . H 5 HOH A 174 366 177 HOH HOH . H 5 HOH A 175 367 178 HOH HOH . H 5 HOH A 176 368 179 HOH HOH . H 5 HOH A 177 369 180 HOH HOH . H 5 HOH A 178 370 181 HOH HOH . H 5 HOH A 179 371 183 HOH HOH . H 5 HOH A 180 372 185 HOH HOH . H 5 HOH A 181 373 187 HOH HOH . H 5 HOH A 182 374 188 HOH HOH . H 5 HOH A 183 375 191 HOH HOH . H 5 HOH A 184 376 192 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 D2D . . . G 4 -3.419 -30.946 -3.732 1 14.08 ? N1 D2D 192 A 1 HETATM 2 C C2 D2D . . . G 4 -2.966 -29.677 -3.844 1 12.45 ? C2 D2D 192 A 1 HETATM 3 N N3 D2D . . . G 4 -2.686 -28.869 -2.834 1 13.08 ? N3 D2D 192 A 1 HETATM 4 C C4 D2D . . . G 4 -2.837 -29.35 -1.627 1 13.38 ? C4 D2D 192 A 1 HETATM 5 C C5 D2D . . . G 4 -3.272 -30.636 -1.389 1 17.52 ? C5 D2D 192 A 1 HETATM 6 C C6 D2D . . . G 4 -3.586 -31.482 -2.48 1 17.74 ? C6 D2D 192 A 1 HETATM 7 C CAA D2D . . . G 4 -0.935 -31.59 3.034 1 19.86 ? CAA D2D 192 A 1 HETATM 8 C CAB D2D . . . G 4 -4.129 -36.277 -1.079 1 28.59 ? CAB D2D 192 A 1 HETATM 9 N NAC D2D . . . G 4 -2.849 -29.166 -5.111 1 15.06 ? NAC D2D 192 A 1 HETATM 10 N NAD D2D . . . G 4 -4.044 -32.716 -2.426 1 22.12 ? NAD D2D 192 A 1 HETATM 11 C CAE D2D . . . G 4 -3.798 -31.725 0.886 1 22.6 ? CAE D2D 192 A 1 HETATM 12 C CAF D2D . . . G 4 -5.283 -36.179 2.936 1 23.17 ? CAF D2D 192 A 1 HETATM 13 C CAG D2D . . . G 4 -4.896 -35.119 3.748 1 30.04 ? CAG D2D 192 A 1 HETATM 14 C CAH D2D . . . G 4 -4.974 -36.152 1.57 1 28.75 ? CAH D2D 192 A 1 HETATM 15 C CAI D2D . . . G 4 -4.169 -34.051 3.212 1 26.66 ? CAI D2D 192 A 1 HETATM 16 C CAJ D2D . . . G 4 -2.866 -29.462 0.523 1 16.12 ? CAJ D2D 192 A 1 HETATM 17 C CAK D2D . . . G 4 -0.798 -32.889 2.165 1 21.66 ? CAK D2D 192 A 1 HETATM 18 C CAL D2D . . . G 4 -1.671 -32.986 0.838 1 22.63 ? CAL D2D 192 A 1 HETATM 19 O OAO D2D . . . G 4 -3.94 -35.029 -0.378 1 26.04 ? OAO D2D 192 A 1 HETATM 20 O OAP D2D . . . G 4 -2.561 -28.601 -0.55 1 14.27 ? OAP D2D 192 A 1 HETATM 21 C CAQ D2D . . . G 4 -3.139 -32.916 1.262 1 23.76 ? CAQ D2D 192 A 1 HETATM 22 C CAS D2D . . . G 4 -3.326 -30.641 0.041 1 21.46 ? CAS D2D 192 A 1 HETATM 23 C CAU D2D . . . G 4 -4.268 -35.051 1.019 1 25.95 ? CAU D2D 192 A 1 HETATM 24 C CAV D2D . . . G 4 -3.843 -34.001 1.872 1 26.27 ? CAV D2D 192 A 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 228 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 24 #