data_3NXX # _model_server_result.job_id '_IibhYVsQVOFxrz2M70rvg' _model_server_result.datetime_utc '2024-12-23 06:39:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nxx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":189}' # _entry.id 3NXX # _exptl.entry_id 3NXX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 338.404 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-[(1E)-2-(2-methoxyphenyl)-4-methylpent-1-en-1-yl]furo[2,3-d]pyrimidine-2,4-diamine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3NXX _cell.length_a 84.351 _cell.length_b 84.351 _cell.length_c 77.656 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NXX _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _chem_comp.formula 'C19 H22 N4 O2' _chem_comp.formula_weight 338.404 _chem_comp.id D2D _chem_comp.mon_nstd_flag . _chem_comp.name 5-[(1E)-2-(2-methoxyphenyl)-4-methylpent-1-en-1-yl]furo[2,3-d]pyrimidine-2,4-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 D2D doub 83 n y N1 C6 D2D sing 84 n y C2 N3 D2D sing 85 n y C2 NAC D2D sing 86 n n N3 C4 D2D doub 87 n y C4 C5 D2D sing 88 n y C4 OAP D2D sing 89 n y C5 C6 D2D doub 90 n y C5 CAS D2D sing 91 n y C6 NAD D2D sing 92 n n CAA CAK D2D sing 93 n n CAA HAA D2D sing 94 n n CAA HAAA D2D sing 95 n n CAA HAAB D2D sing 96 n n CAB OAO D2D sing 97 n n CAB HAB D2D sing 98 n n CAB HABA D2D sing 99 n n CAB HABB D2D sing 100 n n NAC HNAC D2D sing 101 n n NAC HNAA D2D sing 102 n n NAD HNAD D2D sing 103 n n NAD HNAB D2D sing 104 n n CAE CAQ D2D doub 105 e n CAE CAS D2D sing 106 n n CAE HAE D2D sing 107 n n CAF CAG D2D doub 108 n y CAF CAH D2D sing 109 n y CAF HAF D2D sing 110 n n CAG CAI D2D sing 111 n y CAG HAG D2D sing 112 n n CAH CAU D2D doub 113 n y CAH HAH D2D sing 114 n n CAI CAV D2D doub 115 n y CAI HAI D2D sing 116 n n CAJ OAP D2D sing 117 n y CAJ CAS D2D doub 118 n y CAJ HAJ D2D sing 119 n n CAK CAL D2D sing 120 n n CAK C19 D2D sing 121 n n CAK HAK D2D sing 122 n n CAL CAQ D2D sing 123 n n CAL HAL D2D sing 124 n n CAL HALA D2D sing 125 n n OAO CAU D2D sing 126 n n CAQ CAV D2D sing 127 n n CAU CAV D2D sing 128 n y C19 H20 D2D sing 129 n n C19 H21 D2D sing 130 n n C19 H22 D2D sing 131 n n # _atom_sites.entry_id 3NXX _atom_sites.fract_transf_matrix[1][1] 0.011855 _atom_sites.fract_transf_matrix[1][2] 0.006845 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013689 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012877 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NDP A 1 187 1 NDP NDP . C 3 D2D A 1 188 1 D2D D2D . D 3 D2D A 1 189 1 D2D D2D . E 4 HOH A 1 190 1 HOH HOH . E 4 HOH A 2 191 2 HOH HOH . E 4 HOH A 3 192 192 HOH HOH . E 4 HOH A 4 193 193 HOH HOH . E 4 HOH A 5 194 194 HOH HOH . E 4 HOH A 6 195 195 HOH HOH . E 4 HOH A 7 196 3 HOH HOH . E 4 HOH A 8 197 197 HOH HOH . E 4 HOH A 9 198 4 HOH HOH . E 4 HOH A 10 199 5 HOH HOH . E 4 HOH A 11 200 200 HOH HOH . E 4 HOH A 12 201 201 HOH HOH . E 4 HOH A 13 202 202 HOH HOH . E 4 HOH A 14 203 203 HOH HOH . E 4 HOH A 15 204 204 HOH HOH . E 4 HOH A 16 205 205 HOH HOH . E 4 HOH A 17 206 206 HOH HOH . E 4 HOH A 18 207 207 HOH HOH . E 4 HOH A 19 208 208 HOH HOH . E 4 HOH A 20 209 209 HOH HOH . E 4 HOH A 21 210 210 HOH HOH . E 4 HOH A 22 211 211 HOH HOH . E 4 HOH A 23 212 212 HOH HOH . E 4 HOH A 24 213 213 HOH HOH . E 4 HOH A 25 214 214 HOH HOH . E 4 HOH A 26 215 215 HOH HOH . E 4 HOH A 27 216 216 HOH HOH . E 4 HOH A 28 217 217 HOH HOH . E 4 HOH A 29 218 218 HOH HOH . E 4 HOH A 30 219 219 HOH HOH . E 4 HOH A 31 220 220 HOH HOH . E 4 HOH A 32 221 221 HOH HOH . E 4 HOH A 33 222 222 HOH HOH . E 4 HOH A 34 223 223 HOH HOH . E 4 HOH A 35 224 224 HOH HOH . E 4 HOH A 36 225 225 HOH HOH . E 4 HOH A 37 226 226 HOH HOH . E 4 HOH A 38 227 227 HOH HOH . E 4 HOH A 39 228 228 HOH HOH . E 4 HOH A 40 229 229 HOH HOH . E 4 HOH A 41 230 230 HOH HOH . E 4 HOH A 42 231 231 HOH HOH . E 4 HOH A 43 232 232 HOH HOH . E 4 HOH A 44 233 233 HOH HOH . E 4 HOH A 45 234 234 HOH HOH . E 4 HOH A 46 235 235 HOH HOH . E 4 HOH A 47 236 236 HOH HOH . E 4 HOH A 48 237 6 HOH HOH . E 4 HOH A 49 238 238 HOH HOH . E 4 HOH A 50 239 239 HOH HOH . E 4 HOH A 51 240 240 HOH HOH . E 4 HOH A 52 241 241 HOH HOH . E 4 HOH A 53 242 242 HOH HOH . E 4 HOH A 54 243 243 HOH HOH . E 4 HOH A 55 244 244 HOH HOH . E 4 HOH A 56 245 245 HOH HOH . E 4 HOH A 57 246 246 HOH HOH . E 4 HOH A 58 247 247 HOH HOH . E 4 HOH A 59 248 248 HOH HOH . E 4 HOH A 60 249 249 HOH HOH . E 4 HOH A 61 250 250 HOH HOH . E 4 HOH A 62 251 251 HOH HOH . E 4 HOH A 63 252 7 HOH HOH . E 4 HOH A 64 253 8 HOH HOH . E 4 HOH A 65 254 9 HOH HOH . E 4 HOH A 66 255 10 HOH HOH . E 4 HOH A 67 256 11 HOH HOH . E 4 HOH A 68 257 12 HOH HOH . E 4 HOH A 69 258 13 HOH HOH . E 4 HOH A 70 259 14 HOH HOH . E 4 HOH A 71 260 15 HOH HOH . E 4 HOH A 72 261 16 HOH HOH . E 4 HOH A 73 262 17 HOH HOH . E 4 HOH A 74 263 18 HOH HOH . E 4 HOH A 75 264 19 HOH HOH . E 4 HOH A 76 265 20 HOH HOH . E 4 HOH A 77 266 21 HOH HOH . E 4 HOH A 78 267 22 HOH HOH . E 4 HOH A 79 268 23 HOH HOH . E 4 HOH A 80 269 25 HOH HOH . E 4 HOH A 81 270 26 HOH HOH . E 4 HOH A 82 271 27 HOH HOH . E 4 HOH A 83 272 28 HOH HOH . E 4 HOH A 84 273 29 HOH HOH . E 4 HOH A 85 274 30 HOH HOH . E 4 HOH A 86 275 31 HOH HOH . E 4 HOH A 87 276 32 HOH HOH . E 4 HOH A 88 277 33 HOH HOH . E 4 HOH A 89 278 34 HOH HOH . E 4 HOH A 90 279 35 HOH HOH . E 4 HOH A 91 280 36 HOH HOH . E 4 HOH A 92 281 37 HOH HOH . E 4 HOH A 93 282 38 HOH HOH . E 4 HOH A 94 283 39 HOH HOH . E 4 HOH A 95 284 40 HOH HOH . E 4 HOH A 96 285 41 HOH HOH . E 4 HOH A 97 286 42 HOH HOH . E 4 HOH A 98 287 43 HOH HOH . E 4 HOH A 99 288 44 HOH HOH . E 4 HOH A 100 289 45 HOH HOH . E 4 HOH A 101 290 46 HOH HOH . E 4 HOH A 102 291 47 HOH HOH . E 4 HOH A 103 292 48 HOH HOH . E 4 HOH A 104 293 49 HOH HOH . E 4 HOH A 105 294 50 HOH HOH . E 4 HOH A 106 295 51 HOH HOH . E 4 HOH A 107 296 52 HOH HOH . E 4 HOH A 108 297 53 HOH HOH . E 4 HOH A 109 298 54 HOH HOH . E 4 HOH A 110 299 55 HOH HOH . E 4 HOH A 111 300 56 HOH HOH . E 4 HOH A 112 301 57 HOH HOH . E 4 HOH A 113 302 58 HOH HOH . E 4 HOH A 114 303 59 HOH HOH . E 4 HOH A 115 304 60 HOH HOH . E 4 HOH A 116 305 61 HOH HOH . E 4 HOH A 117 306 62 HOH HOH . E 4 HOH A 118 307 63 HOH HOH . E 4 HOH A 119 308 64 HOH HOH . E 4 HOH A 120 309 65 HOH HOH . E 4 HOH A 121 310 66 HOH HOH . E 4 HOH A 122 311 67 HOH HOH . E 4 HOH A 123 312 68 HOH HOH . E 4 HOH A 124 313 69 HOH HOH . E 4 HOH A 125 314 70 HOH HOH . E 4 HOH A 126 315 71 HOH HOH . E 4 HOH A 127 316 72 HOH HOH . E 4 HOH A 128 317 73 HOH HOH . E 4 HOH A 129 318 74 HOH HOH . E 4 HOH A 130 319 75 HOH HOH . E 4 HOH A 131 320 76 HOH HOH . E 4 HOH A 132 321 77 HOH HOH . E 4 HOH A 133 322 78 HOH HOH . E 4 HOH A 134 323 79 HOH HOH . E 4 HOH A 135 324 80 HOH HOH . E 4 HOH A 136 325 81 HOH HOH . E 4 HOH A 137 326 82 HOH HOH . E 4 HOH A 138 327 83 HOH HOH . E 4 HOH A 139 328 84 HOH HOH . E 4 HOH A 140 329 85 HOH HOH . E 4 HOH A 141 330 86 HOH HOH . E 4 HOH A 142 331 87 HOH HOH . E 4 HOH A 143 332 88 HOH HOH . E 4 HOH A 144 333 89 HOH HOH . E 4 HOH A 145 334 90 HOH HOH . E 4 HOH A 146 335 91 HOH HOH . E 4 HOH A 147 336 92 HOH HOH . E 4 HOH A 148 337 93 HOH HOH . E 4 HOH A 149 338 95 HOH HOH . E 4 HOH A 150 339 96 HOH HOH . E 4 HOH A 151 340 97 HOH HOH . E 4 HOH A 152 341 98 HOH HOH . E 4 HOH A 153 342 100 HOH HOH . E 4 HOH A 154 343 101 HOH HOH . E 4 HOH A 155 344 102 HOH HOH . E 4 HOH A 156 345 104 HOH HOH . E 4 HOH A 157 346 105 HOH HOH . E 4 HOH A 158 347 106 HOH HOH . E 4 HOH A 159 348 108 HOH HOH . E 4 HOH A 160 349 109 HOH HOH . E 4 HOH A 161 350 110 HOH HOH . E 4 HOH A 162 351 111 HOH HOH . E 4 HOH A 163 352 112 HOH HOH . E 4 HOH A 164 353 114 HOH HOH . E 4 HOH A 165 354 115 HOH HOH . E 4 HOH A 166 355 116 HOH HOH . E 4 HOH A 167 356 117 HOH HOH . E 4 HOH A 168 357 118 HOH HOH . E 4 HOH A 169 358 119 HOH HOH . E 4 HOH A 170 359 120 HOH HOH . E 4 HOH A 171 360 121 HOH HOH . E 4 HOH A 172 361 122 HOH HOH . E 4 HOH A 173 362 123 HOH HOH . E 4 HOH A 174 363 124 HOH HOH . E 4 HOH A 175 364 125 HOH HOH . E 4 HOH A 176 365 126 HOH HOH . E 4 HOH A 177 366 127 HOH HOH . E 4 HOH A 178 367 128 HOH HOH . E 4 HOH A 179 368 129 HOH HOH . E 4 HOH A 180 369 130 HOH HOH . E 4 HOH A 181 370 131 HOH HOH . E 4 HOH A 182 371 132 HOH HOH . E 4 HOH A 183 372 133 HOH HOH . E 4 HOH A 184 373 134 HOH HOH . E 4 HOH A 185 374 135 HOH HOH . E 4 HOH A 186 375 136 HOH HOH . E 4 HOH A 187 376 137 HOH HOH . E 4 HOH A 188 377 138 HOH HOH . E 4 HOH A 189 378 139 HOH HOH . E 4 HOH A 190 379 140 HOH HOH . E 4 HOH A 191 380 141 HOH HOH . E 4 HOH A 192 381 142 HOH HOH . E 4 HOH A 193 382 143 HOH HOH . E 4 HOH A 194 383 144 HOH HOH . E 4 HOH A 195 384 145 HOH HOH . E 4 HOH A 196 385 146 HOH HOH . E 4 HOH A 197 386 147 HOH HOH . E 4 HOH A 198 387 148 HOH HOH . E 4 HOH A 199 388 149 HOH HOH . E 4 HOH A 200 389 150 HOH HOH . E 4 HOH A 201 390 151 HOH HOH . E 4 HOH A 202 391 152 HOH HOH . E 4 HOH A 203 392 153 HOH HOH . E 4 HOH A 204 393 154 HOH HOH . E 4 HOH A 205 394 156 HOH HOH . E 4 HOH A 206 395 157 HOH HOH . E 4 HOH A 207 396 158 HOH HOH . E 4 HOH A 208 397 159 HOH HOH . E 4 HOH A 209 398 160 HOH HOH . E 4 HOH A 210 399 161 HOH HOH . E 4 HOH A 211 400 162 HOH HOH . E 4 HOH A 212 401 163 HOH HOH . E 4 HOH A 213 402 164 HOH HOH . E 4 HOH A 214 403 165 HOH HOH . E 4 HOH A 215 404 166 HOH HOH . E 4 HOH A 216 405 167 HOH HOH . E 4 HOH A 217 406 168 HOH HOH . E 4 HOH A 218 407 169 HOH HOH . E 4 HOH A 219 408 170 HOH HOH . E 4 HOH A 220 409 171 HOH HOH . E 4 HOH A 221 410 173 HOH HOH . E 4 HOH A 222 411 174 HOH HOH . E 4 HOH A 223 412 175 HOH HOH . E 4 HOH A 224 413 176 HOH HOH . E 4 HOH A 225 414 177 HOH HOH . E 4 HOH A 226 415 178 HOH HOH . E 4 HOH A 227 416 179 HOH HOH . E 4 HOH A 228 417 180 HOH HOH . E 4 HOH A 229 418 181 HOH HOH . E 4 HOH A 230 419 182 HOH HOH . E 4 HOH A 231 420 183 HOH HOH . E 4 HOH A 232 421 184 HOH HOH . E 4 HOH A 233 422 185 HOH HOH . E 4 HOH A 234 423 186 HOH HOH . E 4 HOH A 235 424 187 HOH HOH . E 4 HOH A 236 425 188 HOH HOH . E 4 HOH A 237 426 189 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 D2D . B . D 3 -3.361 -17.707 -22.109 0.5 9.98 ? N1 D2D 189 A 1 HETATM 2 C C2 D2D . B . D 3 -2.989 -19.029 -21.952 0.5 8.8 ? C2 D2D 189 A 1 HETATM 3 N N3 D2D . B . D 3 -2.72 -19.783 -23.007 0.5 8.31 ? N3 D2D 189 A 1 HETATM 4 C C4 D2D . B . D 3 -2.816 -19.237 -24.222 0.5 8.64 ? C4 D2D 189 A 1 HETATM 5 C C5 D2D . B . D 3 -3.156 -17.915 -24.451 0.5 10.1 ? C5 D2D 189 A 1 HETATM 6 C C6 D2D . B . D 3 -3.393 -17.135 -23.324 0.5 8.44 ? C6 D2D 189 A 1 HETATM 7 C CAA D2D . B . D 3 -0.717 -17.432 -29.6 0.5 13.93 ? CAA D2D 189 A 1 HETATM 8 C CAB D2D . B . D 3 -4.351 -12.56 -24.872 0.5 25.49 ? CAB D2D 189 A 1 HETATM 9 N NAC D2D . B . D 3 -2.891 -19.556 -20.715 0.5 9.7 ? NAC D2D 189 A 1 HETATM 10 N NAD D2D . B . D 3 -3.757 -15.839 -23.348 0.5 11.29 ? NAD D2D 189 A 1 HETATM 11 C CAE D2D . B . D 3 -3.465 -16.605 -26.536 0.5 25.06 ? CAE D2D 189 A 1 HETATM 12 C CAF D2D . B . D 3 -5.433 -12.553 -28.795 0.5 21.94 ? CAF D2D 189 A 1 HETATM 13 C CAG D2D . B . D 3 -4.883 -13.443 -29.704 0.5 26.04 ? CAG D2D 189 A 1 HETATM 14 C CAH D2D . B . D 3 -5.195 -12.637 -27.433 0.5 23.26 ? CAH D2D 189 A 1 HETATM 15 C CAI D2D . B . D 3 -4.071 -14.474 -29.25 0.5 27.15 ? CAI D2D 189 A 1 HETATM 16 C CAJ D2D . B . D 3 -2.734 -19.005 -26.356 0.5 15.96 ? CAJ D2D 189 A 1 HETATM 17 C CAK D2D . B . D 3 -1.795 -16.44 -29.372 0.5 24.59 ? CAK D2D 189 A 1 HETATM 18 C CAL D2D . B . D 3 -1.576 -15.875 -27.97 0.5 26.64 ? CAL D2D 189 A 1 HETATM 19 O OAO D2D . B . D 3 -4.144 -13.798 -25.606 0.5 22.51 ? OAO D2D 189 A 1 HETATM 20 O OAP D2D . B . D 3 -2.498 -19.931 -25.325 0.5 10.11 ? OAP D2D 189 A 1 HETATM 21 C CAQ D2D . B . D 3 -2.965 -15.667 -27.431 0.5 25.06 ? CAQ D2D 189 A 1 HETATM 22 C CAS D2D . B . D 3 -3.076 -17.785 -25.842 0.5 18.93 ? CAS D2D 189 A 1 HETATM 23 C CAU D2D . B . D 3 -4.391 -13.687 -26.976 0.5 24.29 ? CAU D2D 189 A 1 HETATM 24 C CAV D2D . B . D 3 -3.81 -14.596 -27.873 0.5 25.02 ? CAV D2D 189 A 1 HETATM 25 C C19 D2D . B . D 3 -3.209 -16.966 -29.435 0.5 23.61 ? C19 D2D 189 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 216 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 25 #