data_3NXY
#
_model_server_result.job_id            Shht8MDNFHVFNkbQ6l7Frg 
_model_server_result.datetime_utc      '2024-11-22 05:37:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3nxy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":187}' 
#
_entry.id    3NXY 
#
_exptl.entry_id    3NXY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3NXY 
_cell.length_a            84.424 
_cell.length_b            84.424 
_cell.length_c            77.348 
_cell.Z_PDB               9 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3NXY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 286 n n 
PA O2A NDP sing 287 n n 
PA O5B NDP sing 288 n n 
PA O3 NDP sing 289 n n 
O2A HOA2 NDP sing 290 n n 
O5B C5B NDP sing 291 n n 
C5B C4B NDP sing 292 n n 
C5B H51A NDP sing 293 n n 
C5B H52A NDP sing 294 n n 
C4B O4B NDP sing 295 n n 
C4B C3B NDP sing 296 n n 
C4B H4B NDP sing 297 n n 
O4B C1B NDP sing 298 n n 
C3B O3B NDP sing 299 n n 
C3B C2B NDP sing 300 n n 
C3B H3B NDP sing 301 n n 
O3B HO3A NDP sing 302 n n 
C2B O2B NDP sing 303 n n 
C2B C1B NDP sing 304 n n 
C2B H2B NDP sing 305 n n 
O2B P2B NDP sing 306 n n 
C1B N9A NDP sing 307 n n 
C1B H1B NDP sing 308 n n 
N9A C8A NDP sing 309 n y 
N9A C4A NDP sing 310 n y 
C8A N7A NDP doub 311 n y 
C8A H8A NDP sing 312 n n 
N7A C5A NDP sing 313 n y 
C5A C6A NDP sing 314 n y 
C5A C4A NDP doub 315 n y 
C6A N6A NDP sing 316 n n 
C6A N1A NDP doub 317 n y 
N6A H61A NDP sing 318 n n 
N6A H62A NDP sing 319 n n 
N1A C2A NDP sing 320 n y 
C2A N3A NDP doub 321 n y 
C2A H2A NDP sing 322 n n 
N3A C4A NDP sing 323 n y 
O3 PN NDP sing 324 n n 
PN O1N NDP doub 325 n n 
PN O2N NDP sing 326 n n 
PN O5D NDP sing 327 n n 
O2N H21N NDP sing 328 n n 
O5D C5D NDP sing 329 n n 
C5D C4D NDP sing 330 n n 
C5D H51N NDP sing 331 n n 
C5D H52N NDP sing 332 n n 
C4D O4D NDP sing 333 n n 
C4D C3D NDP sing 334 n n 
C4D H4D NDP sing 335 n n 
O4D C1D NDP sing 336 n n 
C3D O3D NDP sing 337 n n 
C3D C2D NDP sing 338 n n 
C3D H3D NDP sing 339 n n 
O3D HO3N NDP sing 340 n n 
C2D O2D NDP sing 341 n n 
C2D C1D NDP sing 342 n n 
C2D H2D NDP sing 343 n n 
O2D HO2N NDP sing 344 n n 
C1D N1N NDP sing 345 n n 
C1D H1D NDP sing 346 n n 
N1N C2N NDP sing 347 n n 
N1N C6N NDP sing 348 n n 
C2N C3N NDP doub 349 n n 
C2N H2N NDP sing 350 n n 
C3N C7N NDP sing 351 n n 
C3N C4N NDP sing 352 n n 
C7N O7N NDP doub 353 n n 
C7N N7N NDP sing 354 n n 
N7N H71N NDP sing 355 n n 
N7N H72N NDP sing 356 n n 
C4N C5N NDP sing 357 n n 
C4N H41N NDP sing 358 n n 
C4N H42N NDP sing 359 n n 
C5N C6N NDP doub 360 n n 
C5N H5N NDP sing 361 n n 
C6N H6N NDP sing 362 n n 
P2B O1X NDP doub 363 n n 
P2B O2X NDP sing 364 n n 
P2B O3X NDP sing 365 n n 
O2X HOP2 NDP sing 366 n n 
O3X HOP3 NDP sing 367 n n 
#
_atom_sites.entry_id                     3NXY 
_atom_sites.fract_transf_matrix[1][1]    0.011845 
_atom_sites.fract_transf_matrix[1][2]    0.006839 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013677 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012929 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NDP A 1 187 1 NDP NDP . 
C 3 D2H A 1 188 1 D2H D2H . 
D 4 SO4 A 1 189 1 SO4 SO4 . 
E 4 SO4 A 1 190 2 SO4 SO4 . 
F 5 HOH A 1 191 1 HOH HOH . 
F 5 HOH A 2 192 3 HOH HOH . 
F 5 HOH A 3 193 4 HOH HOH . 
F 5 HOH A 4 194 5 HOH HOH . 
F 5 HOH A 5 195 6 HOH HOH . 
F 5 HOH A 6 196 7 HOH HOH . 
F 5 HOH A 7 197 8 HOH HOH . 
F 5 HOH A 8 198 9 HOH HOH . 
F 5 HOH A 9 199 10 HOH HOH . 
F 5 HOH A 10 200 11 HOH HOH . 
F 5 HOH A 11 201 12 HOH HOH . 
F 5 HOH A 12 202 13 HOH HOH . 
F 5 HOH A 13 203 14 HOH HOH . 
F 5 HOH A 14 204 15 HOH HOH . 
F 5 HOH A 15 205 16 HOH HOH . 
F 5 HOH A 16 206 19 HOH HOH . 
F 5 HOH A 17 207 20 HOH HOH . 
F 5 HOH A 18 208 21 HOH HOH . 
F 5 HOH A 19 209 22 HOH HOH . 
F 5 HOH A 20 210 23 HOH HOH . 
F 5 HOH A 21 211 24 HOH HOH . 
F 5 HOH A 22 212 25 HOH HOH . 
F 5 HOH A 23 213 26 HOH HOH . 
F 5 HOH A 24 214 27 HOH HOH . 
F 5 HOH A 25 215 28 HOH HOH . 
F 5 HOH A 26 216 29 HOH HOH . 
F 5 HOH A 27 217 30 HOH HOH . 
F 5 HOH A 28 218 31 HOH HOH . 
F 5 HOH A 29 219 32 HOH HOH . 
F 5 HOH A 30 220 33 HOH HOH . 
F 5 HOH A 31 221 34 HOH HOH . 
F 5 HOH A 32 222 35 HOH HOH . 
F 5 HOH A 33 223 36 HOH HOH . 
F 5 HOH A 34 224 37 HOH HOH . 
F 5 HOH A 35 225 38 HOH HOH . 
F 5 HOH A 36 226 39 HOH HOH . 
F 5 HOH A 37 227 40 HOH HOH . 
F 5 HOH A 38 228 41 HOH HOH . 
F 5 HOH A 39 229 42 HOH HOH . 
F 5 HOH A 40 230 43 HOH HOH . 
F 5 HOH A 41 231 44 HOH HOH . 
F 5 HOH A 42 232 45 HOH HOH . 
F 5 HOH A 43 233 46 HOH HOH . 
F 5 HOH A 44 234 47 HOH HOH . 
F 5 HOH A 45 235 48 HOH HOH . 
F 5 HOH A 46 236 49 HOH HOH . 
F 5 HOH A 47 237 50 HOH HOH . 
F 5 HOH A 48 238 51 HOH HOH . 
F 5 HOH A 49 239 52 HOH HOH . 
F 5 HOH A 50 240 53 HOH HOH . 
F 5 HOH A 51 241 54 HOH HOH . 
F 5 HOH A 52 242 55 HOH HOH . 
F 5 HOH A 53 243 56 HOH HOH . 
F 5 HOH A 54 244 57 HOH HOH . 
F 5 HOH A 55 245 58 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . B 2 -5.862 22.375 35.878 1 21.97 ? PA NDP 187 A 1 
HETATM 2 O O1A NDP . . . B 2 -5.514 23.816 35.742 1 22.62 ? O1A NDP 187 A 1 
HETATM 3 O O2A NDP . . . B 2 -5.099 21.416 35.058 1 22.03 ? O2A NDP 187 A 1 
HETATM 4 O O5B NDP . . . B 2 -5.7 22.057 37.334 1 24.23 ? O5B NDP 187 A 1 
HETATM 5 C C5B NDP . . . B 2 -6.309 22.918 38.292 1 32.4 ? C5B NDP 187 A 1 
HETATM 6 C C4B NDP . . . B 2 -5.506 22.977 39.591 1 36.27 ? C4B NDP 187 A 1 
HETATM 7 O O4B NDP . . . B 2 -4.047 23.357 39.462 1 36.95 ? O4B NDP 187 A 1 
HETATM 8 C C3B NDP . . . B 2 -6.192 24.097 40.418 1 36.46 ? C3B NDP 187 A 1 
HETATM 9 O O3B NDP . . . B 2 -7.297 23.533 41.169 1 39.33 ? O3B NDP 187 A 1 
HETATM 10 C C2B NDP . . . B 2 -5.012 24.49 41.304 1 35.84 ? C2B NDP 187 A 1 
HETATM 11 O O2B NDP . . . B 2 -4.659 23.399 42.164 1 28.02 ? O2B NDP 187 A 1 
HETATM 12 C C1B NDP . . . B 2 -3.841 24.5 40.293 1 36.26 ? C1B NDP 187 A 1 
HETATM 13 N N9A NDP . . . B 2 -3.729 25.686 39.397 1 39.74 ? N9A NDP 187 A 1 
HETATM 14 C C8A NDP . . . B 2 -4.338 26.01 38.236 1 37.14 ? C8A NDP 187 A 1 
HETATM 15 N N7A NDP . . . B 2 -3.851 27.217 37.844 1 41.19 ? N7A NDP 187 A 1 
HETATM 16 C C5A NDP . . . B 2 -2.92 27.635 38.728 1 40.27 ? C5A NDP 187 A 1 
HETATM 17 C C6A NDP . . . B 2 -2.059 28.76 38.888 1 41.86 ? C6A NDP 187 A 1 
HETATM 18 N N6A NDP . . . B 2 -1.951 29.8 38.045 1 41.8 ? N6A NDP 187 A 1 
HETATM 19 N N1A NDP . . . B 2 -1.261 28.776 39.967 1 42.21 ? N1A NDP 187 A 1 
HETATM 20 C C2A NDP . . . B 2 -1.268 27.78 40.864 1 42.03 ? C2A NDP 187 A 1 
HETATM 21 N N3A NDP . . . B 2 -2.045 26.713 40.785 1 39.67 ? N3A NDP 187 A 1 
HETATM 22 C C4A NDP . . . B 2 -2.869 26.634 39.716 1 40.72 ? C4A NDP 187 A 1 
HETATM 23 O O3 NDP . . . B 2 -7.455 22.106 35.68 1 26.12 ? O3 NDP 187 A 1 
HETATM 24 P PN NDP . . . B 2 -8.67 21.97 34.443 1 33.86 ? PN NDP 187 A 1 
HETATM 25 O O1N NDP . . . B 2 -9.756 21.204 35.109 1 35.79 ? O1N NDP 187 A 1 
HETATM 26 O O2N NDP . . . B 2 -8.993 23.31 33.849 1 29.2 ? O2N NDP 187 A 1 
HETATM 27 O O5D NDP . . . B 2 -8.077 20.999 33.225 1 35.36 ? O5D NDP 187 A 1 
HETATM 28 C C5D NDP . . . B 2 -7.603 19.614 33.334 1 39.26 ? C5D NDP 187 A 1 
HETATM 29 C C4D NDP . . . B 2 -8.622 18.781 32.572 1 42.29 ? C4D NDP 187 A 1 
HETATM 30 O O4D NDP . . . B 2 -8.879 19.294 31.199 1 41.99 ? O4D NDP 187 A 1 
HETATM 31 C C3D NDP . . . B 2 -8.38 17.303 32.36 1 43.44 ? C3D NDP 187 A 1 
HETATM 32 O O3D NDP . . . B 2 -9.721 16.853 32.107 1 47.85 ? O3D NDP 187 A 1 
HETATM 33 C C2D NDP . . . B 2 -7.576 17.203 31.07 1 42.72 ? C2D NDP 187 A 1 
HETATM 34 O O2D NDP . . . B 2 -7.941 16.062 30.319 1 42.48 ? O2D NDP 187 A 1 
HETATM 35 C C1D NDP . . . B 2 -8.151 18.349 30.252 1 42.89 ? C1D NDP 187 A 1 
HETATM 36 N N1N NDP . . . B 2 -7.113 18.988 29.428 1 38.5 ? N1N NDP 187 A 1 
HETATM 37 C C2N NDP . . . B 2 -7.329 18.939 28.066 1 37.49 ? C2N NDP 187 A 1 
HETATM 38 C C3N NDP . . . B 2 -6.424 19.539 27.206 1 35.54 ? C3N NDP 187 A 1 
HETATM 39 C C7N NDP . . . B 2 -6.719 19.492 25.693 1 32.38 ? C7N NDP 187 A 1 
HETATM 40 O O7N NDP . . . B 2 -7.859 18.886 25.143 1 30.72 ? O7N NDP 187 A 1 
HETATM 41 N N7N NDP . . . B 2 -5.885 20.234 24.977 1 21.69 ? N7N NDP 187 A 1 
HETATM 42 C C4N NDP . . . B 2 -5.304 20.207 27.751 1 35.39 ? C4N NDP 187 A 1 
HETATM 43 C C5N NDP . . . B 2 -5.097 20.263 29.14 1 35.28 ? C5N NDP 187 A 1 
HETATM 44 C C6N NDP . . . B 2 -6.003 19.66 29.996 1 37.3 ? C6N NDP 187 A 1 
HETATM 45 P P2B NDP . . . B 2 -4.697 23.595 43.652 1 26.85 ? P2B NDP 187 A 1 
HETATM 46 O O1X NDP . . . B 2 -3.948 24.93 43.884 1 23.36 ? O1X NDP 187 A 1 
HETATM 47 O O2X NDP . . . B 2 -3.772 22.289 44.131 1 28.18 ? O2X NDP 187 A 1 
HETATM 48 O O3X NDP . . . B 2 -6.09 23.52 44.13 1 22.83 ? O3X NDP 187 A 1 
#
_model_server_stats.io_time_ms              5 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           253 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           48 
#