data_3NY1 # _model_server_result.job_id jmnX0hdfbJjavjClJ9J8rw _model_server_result.datetime_utc '2024-12-04 09:19:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ny1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":2}' # _entry.id 3NY1 # _exptl.entry_id 3NY1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.51 _cell.angle_gamma 90 _cell.entry_id 3NY1 _cell.length_a 29.702 _cell.length_b 49.262 _cell.length_c 43.831 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NY1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C ZN ZN . A ZN 4 1_555 A SG CYS 8 A CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc2 C ZN ZN . A ZN 4 1_555 A SG CYS 33 A CYS 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc3 C ZN ZN . A ZN 4 1_555 A SG CYS 36 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc4 C ZN ZN . A ZN 4 1_555 A SG CYS 58 A CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc5 D ZN ZN . A ZN 5 1_555 A SG CYS 36 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc6 D ZN ZN . A ZN 5 1_555 A SG CYS 60 A CYS 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc7 D ZN ZN . A ZN 5 1_555 A SG CYS 72 A CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc8 D ZN ZN . A ZN 5 1_555 A ND1 HIS 75 A HIS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc9 E ZN ZN . A ZN 6 1_555 A SG CYS 21 A CYS 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc10 E ZN ZN . A ZN 6 1_555 A SG CYS 24 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc11 E ZN ZN . A ZN 6 1_555 A ND1 HIS 42 A HIS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc12 E ZN ZN . A ZN 6 1_555 A ND1 HIS 45 A HIS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc13 F ZN ZN . B ZN 1 1_555 B SG CYS 8 B CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc14 F ZN ZN . B ZN 1 1_555 B SG CYS 33 B CYS 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc15 F ZN ZN . B ZN 1 1_555 B SG CYS 36 B CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc16 F ZN ZN . B ZN 1 1_555 B SG CYS 58 B CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc17 G ZN ZN . B ZN 2 1_555 B SG CYS 36 B CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc18 G ZN ZN . B ZN 2 1_555 B SG CYS 60 B CYS 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc19 G ZN ZN . B ZN 2 1_555 B SG CYS 72 B CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc20 G ZN ZN . B ZN 2 1_555 B ND1 HIS 75 B HIS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc21 H ZN ZN . B ZN 3 1_555 B SG CYS 21 B CYS 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc22 H ZN ZN . B ZN 3 1_555 B SG CYS 24 B CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc23 H ZN ZN . B ZN 3 1_555 B ND1 HIS 42 B HIS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc24 H ZN ZN . B ZN 3 1_555 B ND1 HIS 45 B HIS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3NY1 _atom_sites.fract_transf_matrix[1][1] 0.033668 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006248 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0203 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023204 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 4 4 ZN ZN . D 2 ZN A 1 5 5 ZN ZN . E 2 ZN A 1 6 6 ZN ZN . F 2 ZN B 1 1 1 ZN ZN . G 2 ZN B 1 2 2 ZN ZN . H 2 ZN B 1 3 3 ZN ZN . I 3 HOH A 1 1 1 HOH HOH . I 3 HOH A 2 2 2 HOH HOH . I 3 HOH A 3 10 10 HOH HOH . I 3 HOH A 4 13 13 HOH HOH . I 3 HOH A 5 15 15 HOH HOH . I 3 HOH A 6 16 16 HOH HOH . I 3 HOH A 7 23 23 HOH HOH . I 3 HOH A 8 25 25 HOH HOH . I 3 HOH A 9 26 26 HOH HOH . I 3 HOH A 10 29 29 HOH HOH . I 3 HOH A 11 30 30 HOH HOH . I 3 HOH A 12 31 31 HOH HOH . I 3 HOH A 13 33 33 HOH HOH . I 3 HOH A 14 41 41 HOH HOH . I 3 HOH A 15 46 46 HOH HOH . I 3 HOH A 16 169 4 HOH HOH . I 3 HOH A 17 170 5 HOH HOH . J 3 HOH B 1 7 7 HOH HOH . J 3 HOH B 2 8 8 HOH HOH . J 3 HOH B 3 9 9 HOH HOH . J 3 HOH B 4 11 11 HOH HOH . J 3 HOH B 5 12 12 HOH HOH . J 3 HOH B 6 14 14 HOH HOH . J 3 HOH B 7 17 17 HOH HOH . J 3 HOH B 8 18 18 HOH HOH . J 3 HOH B 9 19 19 HOH HOH . J 3 HOH B 10 20 20 HOH HOH . J 3 HOH B 11 21 21 HOH HOH . J 3 HOH B 12 22 22 HOH HOH . J 3 HOH B 13 24 24 HOH HOH . J 3 HOH B 14 28 28 HOH HOH . J 3 HOH B 15 32 32 HOH HOH . J 3 HOH B 16 34 34 HOH HOH . J 3 HOH B 17 36 36 HOH HOH . J 3 HOH B 18 39 39 HOH HOH . J 3 HOH B 19 54 54 HOH HOH . J 3 HOH B 20 55 55 HOH HOH . J 3 HOH B 21 56 56 HOH HOH . J 3 HOH B 22 57 57 HOH HOH . J 3 HOH B 23 169 3 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 2 _atom_site.Cartn_x 7.517 _atom_site.Cartn_y 0.481 _atom_site.Cartn_z 21.366 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 10.16 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 2 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 38 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 1160 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 1 #