data_3NY6
#
_model_server_result.job_id            2Maa86-Y5ruKn6fnNV8xrQ 
_model_server_result.datetime_utc      '2024-10-15 14:29:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ny6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":3001}' 
#
_entry.id    3NY6 
#
_exptl.entry_id    3NY6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3NY6 
_cell.length_a            35.489 
_cell.length_b            64.973 
_cell.length_c            86.603 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3NY6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 116 n n 
C1 C2 GOL sing 117 n n 
C1 H11 GOL sing 118 n n 
C1 H12 GOL sing 119 n n 
O1 HO1 GOL sing 120 n n 
C2 O2 GOL sing 121 n n 
C2 C3 GOL sing 122 n n 
C2 H2 GOL sing 123 n n 
O2 HO2 GOL sing 124 n n 
C3 O3 GOL sing 125 n n 
C3 H31 GOL sing 126 n n 
C3 H32 GOL sing 127 n n 
O3 HO3 GOL sing 128 n n 
#
_atom_sites.entry_id                     3NY6 
_atom_sites.fract_transf_matrix[1][1]    0.028178 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015391 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011547 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL A 1 3001 3001 GOL GOL . 
C 2 GOL A 1 3002 3002 GOL GOL . 
D 3 V30 A 1 1 1 V30 V30 . 
E 4 PO4 A 1 2 2 PO4 PO4 . 
F 5 HOH A 1 1001 1001 HOH HOH . 
F 5 HOH A 2 1002 1002 HOH HOH . 
F 5 HOH A 3 1004 1004 HOH HOH . 
F 5 HOH A 4 1005 1005 HOH HOH . 
F 5 HOH A 5 1006 1006 HOH HOH . 
F 5 HOH A 6 1007 1007 HOH HOH . 
F 5 HOH A 7 1008 1008 HOH HOH . 
F 5 HOH A 8 1010 1010 HOH HOH . 
F 5 HOH A 9 1011 1011 HOH HOH . 
F 5 HOH A 10 1013 1013 HOH HOH . 
F 5 HOH A 11 1014 1014 HOH HOH . 
F 5 HOH A 12 1015 1015 HOH HOH . 
F 5 HOH A 13 1016 1016 HOH HOH . 
F 5 HOH A 14 1017 1017 HOH HOH . 
F 5 HOH A 15 1018 1018 HOH HOH . 
F 5 HOH A 16 1019 1019 HOH HOH . 
F 5 HOH A 17 1020 1020 HOH HOH . 
F 5 HOH A 18 1021 1021 HOH HOH . 
F 5 HOH A 19 1022 1022 HOH HOH . 
F 5 HOH A 20 1023 1023 HOH HOH . 
F 5 HOH A 21 1024 1024 HOH HOH . 
F 5 HOH A 22 1025 1025 HOH HOH . 
F 5 HOH A 23 1026 1026 HOH HOH . 
F 5 HOH A 24 1027 1027 HOH HOH . 
F 5 HOH A 25 1028 1028 HOH HOH . 
F 5 HOH A 26 1029 1029 HOH HOH . 
F 5 HOH A 27 1031 1031 HOH HOH . 
F 5 HOH A 28 1032 1032 HOH HOH . 
F 5 HOH A 29 1034 1034 HOH HOH . 
F 5 HOH A 30 1035 1035 HOH HOH . 
F 5 HOH A 31 1036 1036 HOH HOH . 
F 5 HOH A 32 1038 1038 HOH HOH . 
F 5 HOH A 33 1039 1039 HOH HOH . 
F 5 HOH A 34 1040 1040 HOH HOH . 
F 5 HOH A 35 1041 1041 HOH HOH . 
F 5 HOH A 36 1042 1042 HOH HOH . 
F 5 HOH A 37 1043 1043 HOH HOH . 
F 5 HOH A 38 1044 1044 HOH HOH . 
F 5 HOH A 39 1045 1045 HOH HOH . 
F 5 HOH A 40 1046 1046 HOH HOH . 
F 5 HOH A 41 1047 1047 HOH HOH . 
F 5 HOH A 42 1048 1048 HOH HOH . 
F 5 HOH A 43 1049 1049 HOH HOH . 
F 5 HOH A 44 1050 1050 HOH HOH . 
F 5 HOH A 45 1051 1051 HOH HOH . 
F 5 HOH A 46 1052 1052 HOH HOH . 
F 5 HOH A 47 1054 1054 HOH HOH . 
F 5 HOH A 48 1056 1056 HOH HOH . 
F 5 HOH A 49 1057 1057 HOH HOH . 
F 5 HOH A 50 1058 1058 HOH HOH . 
F 5 HOH A 51 1059 1059 HOH HOH . 
F 5 HOH A 52 1060 1060 HOH HOH . 
F 5 HOH A 53 1061 1061 HOH HOH . 
F 5 HOH A 54 1062 1062 HOH HOH . 
F 5 HOH A 55 1063 1063 HOH HOH . 
F 5 HOH A 56 1064 1064 HOH HOH . 
F 5 HOH A 57 1065 1065 HOH HOH . 
F 5 HOH A 58 1066 1066 HOH HOH . 
F 5 HOH A 59 1067 1067 HOH HOH . 
F 5 HOH A 60 1068 1068 HOH HOH . 
F 5 HOH A 61 1069 1069 HOH HOH . 
F 5 HOH A 62 1070 1070 HOH HOH . 
F 5 HOH A 63 1071 1071 HOH HOH . 
F 5 HOH A 64 1072 1072 HOH HOH . 
F 5 HOH A 65 1073 1073 HOH HOH . 
F 5 HOH A 66 1074 1074 HOH HOH . 
F 5 HOH A 67 1075 1075 HOH HOH . 
F 5 HOH A 68 1076 1076 HOH HOH . 
F 5 HOH A 69 1077 1077 HOH HOH . 
F 5 HOH A 70 1078 1078 HOH HOH . 
F 5 HOH A 71 1079 1079 HOH HOH . 
F 5 HOH A 72 1081 1081 HOH HOH . 
F 5 HOH A 73 1082 1082 HOH HOH . 
F 5 HOH A 74 1084 1084 HOH HOH . 
F 5 HOH A 75 1085 1085 HOH HOH . 
F 5 HOH A 76 1086 1086 HOH HOH . 
F 5 HOH A 77 1087 1087 HOH HOH . 
F 5 HOH A 78 1088 1088 HOH HOH . 
F 5 HOH A 79 1089 1089 HOH HOH . 
F 5 HOH A 80 1090 1090 HOH HOH . 
F 5 HOH A 81 1091 1091 HOH HOH . 
F 5 HOH A 82 1092 1092 HOH HOH . 
F 5 HOH A 83 1093 1093 HOH HOH . 
F 5 HOH A 84 1094 1094 HOH HOH . 
F 5 HOH A 85 1095 1095 HOH HOH . 
F 5 HOH A 86 1096 1096 HOH HOH . 
F 5 HOH A 87 1097 1097 HOH HOH . 
F 5 HOH A 88 1098 1098 HOH HOH . 
F 5 HOH A 89 1099 1099 HOH HOH . 
F 5 HOH A 90 1100 1100 HOH HOH . 
F 5 HOH A 91 1101 1101 HOH HOH . 
F 5 HOH A 92 1102 1102 HOH HOH . 
F 5 HOH A 93 1103 1103 HOH HOH . 
F 5 HOH A 94 1104 1104 HOH HOH . 
F 5 HOH A 95 1105 1105 HOH HOH . 
F 5 HOH A 96 1106 1106 HOH HOH . 
F 5 HOH A 97 1107 1107 HOH HOH . 
F 5 HOH A 98 1108 1108 HOH HOH . 
F 5 HOH A 99 1109 1109 HOH HOH . 
F 5 HOH A 100 1110 1110 HOH HOH . 
F 5 HOH A 101 1111 1111 HOH HOH . 
F 5 HOH A 102 1112 1112 HOH HOH . 
F 5 HOH A 103 1113 1113 HOH HOH . 
F 5 HOH A 104 1114 1114 HOH HOH . 
F 5 HOH A 105 1115 1115 HOH HOH . 
F 5 HOH A 106 1116 1116 HOH HOH . 
F 5 HOH A 107 1117 1117 HOH HOH . 
F 5 HOH A 108 1118 1118 HOH HOH . 
F 5 HOH A 109 1119 1119 HOH HOH . 
F 5 HOH A 110 1120 1120 HOH HOH . 
F 5 HOH A 111 1121 1121 HOH HOH . 
F 5 HOH A 112 1122 1122 HOH HOH . 
F 5 HOH A 113 1123 1123 HOH HOH . 
F 5 HOH A 114 1124 1124 HOH HOH . 
F 5 HOH A 115 1125 1125 HOH HOH . 
F 5 HOH A 116 1126 1126 HOH HOH . 
F 5 HOH A 117 1127 1127 HOH HOH . 
F 5 HOH A 118 1128 1128 HOH HOH . 
F 5 HOH A 119 1130 1130 HOH HOH . 
F 5 HOH A 120 1131 1131 HOH HOH . 
F 5 HOH A 121 1132 1132 HOH HOH . 
F 5 HOH A 122 1133 1133 HOH HOH . 
F 5 HOH A 123 1134 1134 HOH HOH . 
F 5 HOH A 124 1135 1135 HOH HOH . 
F 5 HOH A 125 1136 1136 HOH HOH . 
F 5 HOH A 126 1137 1137 HOH HOH . 
F 5 HOH A 127 1138 1138 HOH HOH . 
F 5 HOH A 128 1139 1139 HOH HOH . 
F 5 HOH A 129 1140 1140 HOH HOH . 
F 5 HOH A 130 1142 1142 HOH HOH . 
F 5 HOH A 131 1143 1143 HOH HOH . 
F 5 HOH A 132 1144 1144 HOH HOH . 
F 5 HOH A 133 1145 1145 HOH HOH . 
F 5 HOH A 134 1146 1146 HOH HOH . 
F 5 HOH A 135 1147 1147 HOH HOH . 
F 5 HOH A 136 1148 1148 HOH HOH . 
F 5 HOH A 137 1149 1149 HOH HOH . 
F 5 HOH A 138 1150 1150 HOH HOH . 
F 5 HOH A 139 1152 1152 HOH HOH . 
F 5 HOH A 140 1154 1154 HOH HOH . 
F 5 HOH A 141 1155 1155 HOH HOH . 
F 5 HOH A 142 1156 1156 HOH HOH . 
F 5 HOH A 143 1157 1157 HOH HOH . 
F 5 HOH A 144 1158 1158 HOH HOH . 
F 5 HOH A 145 1159 1159 HOH HOH . 
F 5 HOH A 146 1160 1160 HOH HOH . 
F 5 HOH A 147 1162 1162 HOH HOH . 
F 5 HOH A 148 1163 1163 HOH HOH . 
F 5 HOH A 149 1164 1164 HOH HOH . 
F 5 HOH A 150 1165 1165 HOH HOH . 
F 5 HOH A 151 1166 1166 HOH HOH . 
F 5 HOH A 152 1167 1167 HOH HOH . 
F 5 HOH A 153 1168 1168 HOH HOH . 
F 5 HOH A 154 1169 1169 HOH HOH . 
F 5 HOH A 155 1170 1170 HOH HOH . 
F 5 HOH A 156 1171 1171 HOH HOH . 
F 5 HOH A 157 1172 1172 HOH HOH . 
F 5 HOH A 158 1173 1173 HOH HOH . 
F 5 HOH A 159 1174 1174 HOH HOH . 
F 5 HOH A 160 1175 1175 HOH HOH . 
F 5 HOH A 161 1177 1177 HOH HOH . 
F 5 HOH A 162 1178 1178 HOH HOH . 
F 5 HOH A 163 1179 1179 HOH HOH . 
F 5 HOH A 164 1180 1180 HOH HOH . 
F 5 HOH A 165 1181 1181 HOH HOH . 
F 5 HOH A 166 1182 1182 HOH HOH . 
F 5 HOH A 167 1183 1183 HOH HOH . 
F 5 HOH A 168 1184 1184 HOH HOH . 
F 5 HOH A 169 1185 1185 HOH HOH . 
F 5 HOH A 170 1186 1186 HOH HOH . 
F 5 HOH A 171 1187 1187 HOH HOH . 
F 5 HOH A 172 1188 1188 HOH HOH . 
F 5 HOH A 173 1189 1189 HOH HOH . 
F 5 HOH A 174 1190 1190 HOH HOH . 
F 5 HOH A 175 1191 1191 HOH HOH . 
F 5 HOH A 176 1192 1192 HOH HOH . 
F 5 HOH A 177 1194 1194 HOH HOH . 
F 5 HOH A 178 1196 1196 HOH HOH . 
F 5 HOH A 179 1199 1199 HOH HOH . 
F 5 HOH A 180 1200 1200 HOH HOH . 
F 5 HOH A 181 1201 1201 HOH HOH . 
F 5 HOH A 182 1202 1202 HOH HOH . 
F 5 HOH A 183 1203 1203 HOH HOH . 
F 5 HOH A 184 1204 1204 HOH HOH . 
F 5 HOH A 185 1205 1205 HOH HOH . 
F 5 HOH A 186 1206 1206 HOH HOH . 
F 5 HOH A 187 1207 1207 HOH HOH . 
F 5 HOH A 188 1208 1208 HOH HOH . 
F 5 HOH A 189 1209 1209 HOH HOH . 
F 5 HOH A 190 1210 1210 HOH HOH . 
F 5 HOH A 191 1211 1211 HOH HOH . 
F 5 HOH A 192 1212 1212 HOH HOH . 
F 5 HOH A 193 1213 1213 HOH HOH . 
F 5 HOH A 194 1214 1214 HOH HOH . 
F 5 HOH A 195 1215 1215 HOH HOH . 
F 5 HOH A 196 1216 1216 HOH HOH . 
F 5 HOH A 197 1217 1217 HOH HOH . 
F 5 HOH A 198 1218 1218 HOH HOH . 
F 5 HOH A 199 1219 1219 HOH HOH . 
F 5 HOH A 200 1220 1220 HOH HOH . 
F 5 HOH A 201 1221 1221 HOH HOH . 
F 5 HOH A 202 1222 1222 HOH HOH . 
F 5 HOH A 203 1223 1223 HOH HOH . 
F 5 HOH A 204 1224 1224 HOH HOH . 
F 5 HOH A 205 1225 1225 HOH HOH . 
F 5 HOH A 206 1226 1226 HOH HOH . 
F 5 HOH A 207 1227 1227 HOH HOH . 
F 5 HOH A 208 1228 1228 HOH HOH . 
F 5 HOH A 209 1229 1229 HOH HOH . 
F 5 HOH A 210 1230 1230 HOH HOH . 
F 5 HOH A 211 1231 1231 HOH HOH . 
F 5 HOH A 212 1233 1233 HOH HOH . 
F 5 HOH A 213 1234 1234 HOH HOH . 
F 5 HOH A 214 1237 1237 HOH HOH . 
F 5 HOH A 215 1238 1238 HOH HOH . 
F 5 HOH A 216 1239 1239 HOH HOH . 
F 5 HOH A 217 1240 1240 HOH HOH . 
F 5 HOH A 218 1241 1241 HOH HOH . 
F 5 HOH A 219 1242 1242 HOH HOH . 
F 5 HOH A 220 1243 1243 HOH HOH . 
F 5 HOH A 221 1244 1244 HOH HOH . 
F 5 HOH A 222 1245 1245 HOH HOH . 
F 5 HOH A 223 1246 1246 HOH HOH . 
F 5 HOH A 224 1247 1247 HOH HOH . 
F 5 HOH A 225 1248 1248 HOH HOH . 
F 5 HOH A 226 1249 1249 HOH HOH . 
F 5 HOH A 227 1250 1250 HOH HOH . 
F 5 HOH A 228 1252 1252 HOH HOH . 
F 5 HOH A 229 1253 1253 HOH HOH . 
F 5 HOH A 230 1254 1254 HOH HOH . 
F 5 HOH A 231 1255 1255 HOH HOH . 
F 5 HOH A 232 1256 1256 HOH HOH . 
F 5 HOH A 233 1258 1258 HOH HOH . 
F 5 HOH A 234 1259 1259 HOH HOH . 
F 5 HOH A 235 1260 1260 HOH HOH . 
F 5 HOH A 236 1262 1262 HOH HOH . 
F 5 HOH A 237 1263 1263 HOH HOH . 
F 5 HOH A 238 1264 1264 HOH HOH . 
F 5 HOH A 239 1265 1265 HOH HOH . 
F 5 HOH A 240 1266 1266 HOH HOH . 
F 5 HOH A 241 1268 1268 HOH HOH . 
F 5 HOH A 242 1269 1269 HOH HOH . 
F 5 HOH A 243 1270 1270 HOH HOH . 
F 5 HOH A 244 1272 1272 HOH HOH . 
F 5 HOH A 245 1273 1273 HOH HOH . 
F 5 HOH A 246 1274 1274 HOH HOH . 
F 5 HOH A 247 1275 1275 HOH HOH . 
F 5 HOH A 248 1276 1276 HOH HOH . 
F 5 HOH A 249 1277 1277 HOH HOH . 
F 5 HOH A 250 1279 1279 HOH HOH . 
F 5 HOH A 251 1280 1280 HOH HOH . 
F 5 HOH A 252 1282 1282 HOH HOH . 
F 5 HOH A 253 1284 1284 HOH HOH . 
F 5 HOH A 254 1286 1286 HOH HOH . 
F 5 HOH A 255 1289 1289 HOH HOH . 
F 5 HOH A 256 1290 1290 HOH HOH . 
F 5 HOH A 257 1292 1292 HOH HOH . 
F 5 HOH A 258 1293 1293 HOH HOH . 
F 5 HOH A 259 1296 1296 HOH HOH . 
F 5 HOH A 260 1297 1297 HOH HOH . 
F 5 HOH A 261 1298 1298 HOH HOH . 
F 5 HOH A 262 1299 1299 HOH HOH . 
F 5 HOH A 263 1300 1300 HOH HOH . 
F 5 HOH A 264 1301 1301 HOH HOH . 
F 5 HOH A 265 1302 1302 HOH HOH . 
F 5 HOH A 266 1303 1303 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . B 2 2.869 0.944 -7.987 1 20.19 ? C1 GOL 3001 A 1 
HETATM 2 O O1 GOL . . . B 2 3.357 1.595 -9.161 1 18.19 ? O1 GOL 3001 A 1 
HETATM 3 C C2 GOL . . . B 2 2.584 2.032 -6.957 1 19.73 ? C2 GOL 3001 A 1 
HETATM 4 O O2 GOL . . . B 2 1.406 2.719 -7.285 1 20.21 ? O2 GOL 3001 A 1 
HETATM 5 C C3 GOL . . . B 2 2.473 1.479 -5.531 1 18.59 ? C3 GOL 3001 A 1 
HETATM 6 O O3 GOL . . . B 2 1.382 0.589 -5.39 1 17.7 ? O3 GOL 3001 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#